Wall clock time and date at job start Wed Apr 1 2020 04:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30175 * 126.80352 * 2 1 4 4 O 1.20918 * 111.60670 * 179.97438 * 3 2 1 5 5 C 1.34038 * 111.56829 * 359.76441 * 4 3 2 6 6 C 1.50703 * 126.77997 * 180.29364 * 5 4 3 7 7 C 1.35449 * 106.44765 * 0.37468 * 5 4 3 8 8 C 1.50697 * 128.01256 * 179.91435 * 7 5 4 9 9 H 1.08999 * 109.46749 * 3.87602 * 8 7 5 10 10 C 1.52997 * 109.46934 * 243.87992 * 8 7 5 11 11 C 1.50698 * 109.47291 * 123.87777 * 8 7 5 12 12 O 1.21284 * 120.00068 * 10.94260 * 11 8 7 13 13 N 1.34771 * 119.99826 * 190.95087 * 11 8 7 14 14 C 1.47674 * 134.45756 * 355.51225 * 13 11 8 15 15 C 1.53444 * 85.97599 * 155.71526 * 14 13 11 16 16 C 1.47674 * 134.45448 * 175.51562 * 13 11 8 17 17 C 1.52633 * 113.71290 * 268.85700 * 15 14 13 18 18 C 1.53182 * 109.35556 * 171.27426 * 17 15 14 19 19 C 1.52667 * 109.42864 * 58.92115 * 18 17 15 20 20 N 1.46894 * 109.34941 * 303.77256 * 19 18 17 21 21 C 1.36941 * 120.69446 * 235.30955 * 20 19 18 22 22 H 1.07995 * 119.99747 * 146.72913 * 21 20 19 23 23 C 1.38810 * 119.99482 * 326.73148 * 21 20 19 24 24 N 1.31615 * 120.00242 * 336.87378 * 23 21 20 25 25 Si 1.86798 * 119.99818 * 156.88024 * 23 21 20 26 26 H 1.48503 * 109.47508 * 59.99263 * 25 23 21 27 27 H 1.48494 * 109.47252 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47128 * 299.99565 * 25 23 21 29 29 C 1.47119 * 118.61714 * 55.03893 * 20 19 18 30 30 H 1.08996 * 109.47083 * 274.88844 * 1 2 3 31 31 H 1.08997 * 109.47204 * 34.88753 * 1 2 3 32 32 H 1.08996 * 109.46964 * 154.88625 * 1 2 3 33 33 H 1.09004 * 109.46404 * 274.18764 * 6 5 4 34 34 H 1.09001 * 109.46914 * 34.17894 * 6 5 4 35 35 H 1.08989 * 109.47424 * 154.18721 * 6 5 4 36 36 H 1.09002 * 109.47211 * 303.40948 * 10 8 7 37 37 H 1.08996 * 109.47524 * 63.41948 * 10 8 7 38 38 H 1.09003 * 109.46587 * 183.41467 * 10 8 7 39 39 H 1.09001 * 113.78996 * 41.45109 * 14 13 11 40 40 H 1.08999 * 113.79181 * 269.98155 * 14 13 11 41 41 H 1.09001 * 113.79363 * 90.02066 * 16 13 11 42 42 H 1.09001 * 113.79376 * 318.55138 * 16 13 11 43 43 H 1.09000 * 109.49034 * 291.23236 * 17 15 14 44 44 H 1.09000 * 109.49716 * 51.30657 * 17 15 14 45 45 H 1.08996 * 109.49634 * 179.02442 * 18 17 15 46 46 H 1.09000 * 109.48869 * 299.09473 * 18 17 15 47 47 H 1.08999 * 109.44083 * 183.78759 * 19 18 17 48 48 H 1.09001 * 109.36867 * 63.71548 * 19 18 17 49 49 H 0.97000 * 120.00437 * 355.27269 * 24 23 21 50 50 H 1.08998 * 109.63586 * 68.57789 * 29 20 19 51 51 H 1.09002 * 109.64017 * 189.19141 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 0.0005 5 6 3.6025 -0.6068 0.0060 6 6 4.9022 -1.3695 0.0145 7 6 2.3540 -1.1321 0.0007 8 6 1.9591 -2.5864 0.0017 9 1 2.8530 -3.2055 0.0772 10 6 1.2193 -2.9148 -1.2966 11 6 1.0570 -2.8611 1.1772 12 8 0.6032 -1.9395 1.8218 13 7 0.7547 -4.1311 1.5122 14 6 1.0472 -5.4536 0.9238 15 6 0.8437 -6.0084 2.3399 16 6 -0.0019 -4.7576 2.6148 17 6 2.1269 -6.0740 3.1638 18 6 1.7820 -6.4301 4.6132 19 6 1.0573 -7.7734 4.6475 20 7 -0.1294 -7.7084 3.7842 21 6 -1.3708 -8.0080 4.2787 22 1 -2.2413 -7.4924 3.9011 23 6 -1.5100 -8.9744 5.2654 24 7 -0.5891 -9.9034 5.4113 25 14 -3.0045 -8.9566 6.3859 26 1 -4.2370 -9.0970 5.5696 27 1 -2.9163 -10.0854 7.3467 28 1 -3.0485 -7.6733 7.1320 29 6 0.0426 -7.3088 2.3788 30 1 -0.3633 0.0876 1.0239 31 1 -0.3633 0.8429 -0.5878 32 1 -0.3633 -0.9305 -0.4361 33 1 5.2579 -1.4924 -1.0085 34 1 5.6433 -0.8181 0.5931 35 1 4.7454 -2.3496 0.4649 36 1 0.3589 -2.2539 -1.4018 37 1 1.8912 -2.7742 -2.1433 38 1 0.8807 -3.9506 -1.2697 39 1 2.0678 -5.5545 0.5545 40 1 0.2985 -5.7914 0.2073 41 1 -1.0628 -4.8885 2.4014 42 1 0.1850 -4.3057 3.5889 43 1 2.7866 -6.8363 2.7493 44 1 2.6268 -5.1058 3.1362 45 1 2.6983 -6.4946 5.1998 46 1 1.1347 -5.6599 5.0327 47 1 0.7524 -7.9951 5.6702 48 1 1.7271 -8.5547 4.2881 49 1 0.1515 -9.9545 4.7870 50 1 0.5821 -8.0877 1.8400 51 1 -0.9338 -7.1514 1.9206 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982069210.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:17 Heat of formation + Delta-G solvation = 70.082697 kcal Electronic energy + Delta-G solvation = -31977.462103 eV Core-core repulsion = 27881.654337 eV Total energy + Delta-G solvation = -4095.807766 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.03091 -40.77501 -38.76402 -36.17612 -35.63941 -33.93415 -32.94792 -32.20864 -30.68562 -29.75355 -28.79325 -27.85403 -26.39923 -26.04954 -25.21370 -24.68890 -22.40993 -22.03204 -20.72865 -20.28826 -19.07832 -17.96565 -17.79342 -17.39111 -17.11784 -16.82365 -15.87531 -15.66275 -14.91213 -14.54600 -14.32274 -14.16999 -13.97149 -13.74422 -13.66780 -13.57308 -13.41596 -13.27319 -13.15409 -13.04856 -12.86397 -12.61600 -12.46106 -12.34123 -12.11584 -11.89829 -11.87864 -11.70584 -11.50687 -11.13520 -10.93944 -10.74211 -10.47749 -10.24403 -10.11947 -10.06458 -9.95958 -9.86564 -9.63051 -9.29872 -9.22928 -8.60342 -8.40121 -6.89189 -6.11299 -3.34884 1.29851 2.09435 2.61004 2.85707 2.99316 3.46422 3.50117 3.67485 4.03356 4.22258 4.29555 4.42044 4.55928 4.60791 4.65431 4.81394 4.93697 5.00037 5.05582 5.08761 5.15433 5.24830 5.25618 5.35929 5.37122 5.44169 5.47898 5.48155 5.53541 5.56729 5.59157 5.69010 5.72539 5.77036 5.79834 5.85252 5.91362 5.95826 6.11086 6.18102 6.25413 6.36837 6.42352 6.52019 6.60401 6.65902 7.01490 7.13341 7.77148 7.99020 8.17792 8.20221 8.54374 9.05735 9.78035 10.24441 11.16447 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020575 B = 0.002520 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.530595 B =11108.716958 C =11563.306727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.058 3.942 3 N -0.375 5.375 4 O 0.093 5.907 5 C -0.030 4.030 6 C -0.074 4.074 7 C -0.183 4.183 8 C -0.025 4.025 9 H 0.103 0.897 10 C -0.142 4.142 11 C 0.536 3.464 12 O -0.535 6.535 13 N -0.639 5.639 14 C 0.106 3.894 15 C -0.103 4.103 16 C 0.132 3.868 17 C -0.081 4.081 18 C -0.137 4.137 19 C 0.152 3.848 20 N -0.594 5.594 21 C -0.353 4.353 22 H 0.053 0.947 23 C -0.019 4.019 24 N -0.913 5.913 25 Si 1.065 2.935 26 H -0.292 1.292 27 H -0.285 1.285 28 H -0.292 1.292 29 C 0.164 3.836 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.049 0.951 45 H 0.052 0.948 46 H 0.058 0.942 47 H 0.074 0.926 48 H 0.017 0.983 49 H 0.269 0.731 50 H 0.022 0.978 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.747 12.537 -14.464 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.101 4.101 3 N -0.083 5.083 4 O 0.030 5.970 5 C -0.094 4.094 6 C -0.131 4.131 7 C -0.187 4.187 8 C -0.047 4.047 9 H 0.121 0.879 10 C -0.199 4.199 11 C 0.324 3.676 12 O -0.412 6.412 13 N -0.375 5.375 14 C -0.018 4.018 15 C -0.105 4.105 16 C 0.010 3.990 17 C -0.119 4.119 18 C -0.177 4.177 19 C 0.026 3.974 20 N -0.318 5.318 21 C -0.482 4.482 22 H 0.070 0.930 23 C -0.222 4.222 24 N -0.552 5.552 25 Si 0.894 3.106 26 H -0.219 1.219 27 H -0.211 1.211 28 H -0.220 1.220 29 C 0.037 3.963 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.092 0.908 48 H 0.035 0.965 49 H 0.080 0.920 50 H 0.040 0.960 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.602 13.799 -12.839 20.718 hybrid contribution 0.630 -0.004 -1.360 1.499 sum 9.233 13.795 -14.199 21.844 Atomic orbital electron populations 1.20198 0.86008 1.02401 1.03963 1.23288 0.98906 0.87834 1.00094 1.73809 0.89170 1.23855 1.21444 1.84787 1.21824 1.22072 1.68268 1.24162 0.97860 0.84223 1.03174 1.20344 0.90167 0.98601 1.04010 1.20320 0.91814 0.95985 1.10605 1.19432 0.99276 0.90889 0.95086 0.87948 1.21802 1.00814 1.02445 0.94852 1.20013 0.81488 0.81166 0.84897 1.90699 1.54169 1.42638 1.53676 1.50158 1.53987 1.04078 1.29241 1.23345 1.01224 0.79887 0.97324 1.22604 0.97397 0.97164 0.93363 1.23135 0.96217 0.89139 0.90471 1.21093 0.94617 1.00186 0.96009 1.21997 0.99678 1.01041 0.94940 1.20802 0.87897 0.92082 0.96631 1.44033 1.04276 1.79801 1.03641 1.19872 0.84822 1.19167 1.24322 0.92961 1.25916 1.03853 0.91497 1.00908 1.70784 1.14602 1.29447 1.40354 0.83529 0.74737 0.75871 0.76450 1.21919 1.21096 1.21956 1.20794 0.96642 0.90817 0.88057 0.89223 0.91467 0.90665 0.89379 0.89664 0.89233 0.91608 0.91212 0.91192 0.90379 0.89474 0.89780 0.90387 0.92083 0.93180 0.92893 0.92341 0.90768 0.96519 0.91968 0.96004 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 8.75 36.01 0.32 -0.52 16 2 C 0.06 0.79 6.69 -82.10 -0.55 0.24 16 3 N -0.38 -5.44 12.07 33.42 0.40 -5.03 16 4 O 0.09 1.19 11.20 17.18 0.19 1.39 16 5 C -0.03 -0.32 7.49 -35.30 -0.26 -0.59 16 6 C -0.07 -0.45 10.25 36.01 0.37 -0.08 16 7 C -0.18 -2.18 4.65 -104.42 -0.49 -2.67 16 8 C -0.02 -0.26 2.74 -92.93 -0.25 -0.51 16 9 H 0.10 0.85 7.00 -51.93 -0.36 0.48 16 10 C -0.14 -1.17 9.10 37.16 0.34 -0.83 16 11 C 0.54 7.41 7.11 -10.99 -0.08 7.33 16 12 O -0.54 -9.34 13.97 5.55 0.08 -9.26 16 13 N -0.64 -8.45 3.45 -180.44 -0.62 -9.07 16 14 C 0.11 1.16 6.72 -3.18 -0.02 1.14 16 15 C -0.10 -1.50 0.87 -154.44 -0.13 -1.63 16 16 C 0.13 2.04 7.81 -3.17 -0.02 2.02 16 17 C -0.08 -1.19 5.02 -26.83 -0.13 -1.33 16 18 C -0.14 -2.39 5.99 -26.81 -0.16 -2.55 16 19 C 0.15 3.28 4.65 -4.00 -0.02 3.26 16 20 N -0.59 -13.56 2.79 -172.76 -0.48 -14.05 16 21 C -0.35 -9.24 9.46 -15.06 -0.14 -9.38 16 22 H 0.05 1.38 7.93 -52.49 -0.42 0.97 16 23 C -0.02 -0.51 4.70 -17.43 -0.08 -0.59 16 24 N -0.91 -26.30 12.60 55.49 0.70 -25.60 16 25 Si 1.06 24.48 29.98 -169.99 -5.10 19.39 16 26 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 28 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 29 C 0.16 2.98 5.71 -3.81 -0.02 2.95 16 30 H 0.09 1.24 7.41 -51.93 -0.38 0.86 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.85 5.75 -51.93 -0.30 0.55 16 33 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.48 7.18 -51.93 -0.37 0.10 16 36 H 0.07 0.59 5.82 -51.93 -0.30 0.29 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.52 7.09 -51.93 -0.37 0.15 16 39 H 0.08 0.69 8.09 -51.93 -0.42 0.27 16 40 H 0.09 0.85 8.09 -51.93 -0.42 0.43 16 41 H 0.08 1.34 7.97 -51.93 -0.41 0.93 16 42 H 0.08 1.35 7.37 -51.93 -0.38 0.97 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.05 0.70 8.02 -51.93 -0.42 0.28 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.06 1.09 7.37 -51.93 -0.38 0.71 16 47 H 0.07 1.84 6.56 -51.93 -0.34 1.50 16 48 H 0.02 0.37 7.90 -51.93 -0.41 -0.04 16 49 H 0.27 7.77 6.79 -40.82 -0.28 7.50 16 50 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.06 1.08 7.78 -51.93 -0.40 0.67 16 LS Contribution 396.22 15.07 5.97 5.97 Total: -1.00 -32.47 396.22 -8.34 -40.81 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -8.13 Total: -0.79 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -1.35 Total: -3.75 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.00 Total: -53.75 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.27 Total: -7.87 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.10 Total: 19.39 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.47 -8.34 -40.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982069210.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.891 kcal (2) G-P(sol) polarization free energy of solvation -32.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds