Wall clock time and date at job start Wed Apr 1 2020 04:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30175 * 126.80352 * 2 1 4 4 O 1.20918 * 111.60670 * 179.97438 * 3 2 1 5 5 C 1.34038 * 111.56829 * 359.76441 * 4 3 2 6 6 C 1.50703 * 126.77997 * 180.29364 * 5 4 3 7 7 C 1.35449 * 106.44765 * 0.37468 * 5 4 3 8 8 C 1.50697 * 128.01256 * 179.91435 * 7 5 4 9 9 H 1.08999 * 109.46749 * 3.87602 * 8 7 5 10 10 C 1.52997 * 109.46934 * 243.87992 * 8 7 5 11 11 C 1.50698 * 109.47291 * 123.87777 * 8 7 5 12 12 O 1.21284 * 120.00068 * 10.94260 * 11 8 7 13 13 N 1.34771 * 119.99826 * 190.95087 * 11 8 7 14 14 C 1.47674 * 134.45756 * 355.51225 * 13 11 8 15 15 C 1.53444 * 85.97599 * 155.71526 * 14 13 11 16 16 C 1.47674 * 134.45448 * 175.51562 * 13 11 8 17 17 C 1.52633 * 113.71290 * 268.85700 * 15 14 13 18 18 C 1.53182 * 109.35556 * 171.27426 * 17 15 14 19 19 C 1.52667 * 109.42864 * 58.92115 * 18 17 15 20 20 N 1.46894 * 109.34941 * 303.77256 * 19 18 17 21 21 C 1.36941 * 120.69446 * 235.30955 * 20 19 18 22 22 H 1.07995 * 119.99747 * 146.72913 * 21 20 19 23 23 C 1.38810 * 119.99482 * 326.73148 * 21 20 19 24 24 N 1.31615 * 120.00242 * 336.87378 * 23 21 20 25 25 Si 1.86798 * 119.99818 * 156.88024 * 23 21 20 26 26 H 1.48503 * 109.47508 * 59.99263 * 25 23 21 27 27 H 1.48494 * 109.47252 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47128 * 299.99565 * 25 23 21 29 29 C 1.47119 * 118.61714 * 55.03893 * 20 19 18 30 30 H 1.08996 * 109.47083 * 274.88844 * 1 2 3 31 31 H 1.08997 * 109.47204 * 34.88753 * 1 2 3 32 32 H 1.08996 * 109.46964 * 154.88625 * 1 2 3 33 33 H 1.09004 * 109.46404 * 274.18764 * 6 5 4 34 34 H 1.09001 * 109.46914 * 34.17894 * 6 5 4 35 35 H 1.08989 * 109.47424 * 154.18721 * 6 5 4 36 36 H 1.09002 * 109.47211 * 303.40948 * 10 8 7 37 37 H 1.08996 * 109.47524 * 63.41948 * 10 8 7 38 38 H 1.09003 * 109.46587 * 183.41467 * 10 8 7 39 39 H 1.09001 * 113.78996 * 41.45109 * 14 13 11 40 40 H 1.08999 * 113.79181 * 269.98155 * 14 13 11 41 41 H 1.09001 * 113.79363 * 90.02066 * 16 13 11 42 42 H 1.09001 * 113.79376 * 318.55138 * 16 13 11 43 43 H 1.09000 * 109.49034 * 291.23236 * 17 15 14 44 44 H 1.09000 * 109.49716 * 51.30657 * 17 15 14 45 45 H 1.08996 * 109.49634 * 179.02442 * 18 17 15 46 46 H 1.09000 * 109.48869 * 299.09473 * 18 17 15 47 47 H 1.08999 * 109.44083 * 183.78759 * 19 18 17 48 48 H 1.09001 * 109.36867 * 63.71548 * 19 18 17 49 49 H 0.97000 * 120.00437 * 355.27269 * 24 23 21 50 50 H 1.08998 * 109.63586 * 68.57789 * 29 20 19 51 51 H 1.09002 * 109.64017 * 189.19141 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 0.0005 5 6 3.6025 -0.6068 0.0060 6 6 4.9022 -1.3695 0.0145 7 6 2.3540 -1.1321 0.0007 8 6 1.9591 -2.5864 0.0017 9 1 2.8530 -3.2055 0.0772 10 6 1.2193 -2.9148 -1.2966 11 6 1.0570 -2.8611 1.1772 12 8 0.6032 -1.9395 1.8218 13 7 0.7547 -4.1311 1.5122 14 6 1.0472 -5.4536 0.9238 15 6 0.8437 -6.0084 2.3399 16 6 -0.0019 -4.7576 2.6148 17 6 2.1269 -6.0740 3.1638 18 6 1.7820 -6.4301 4.6132 19 6 1.0573 -7.7734 4.6475 20 7 -0.1294 -7.7084 3.7842 21 6 -1.3708 -8.0080 4.2787 22 1 -2.2413 -7.4924 3.9011 23 6 -1.5100 -8.9744 5.2654 24 7 -0.5891 -9.9034 5.4113 25 14 -3.0045 -8.9566 6.3859 26 1 -4.2370 -9.0970 5.5696 27 1 -2.9163 -10.0854 7.3467 28 1 -3.0485 -7.6733 7.1320 29 6 0.0426 -7.3088 2.3788 30 1 -0.3633 0.0876 1.0239 31 1 -0.3633 0.8429 -0.5878 32 1 -0.3633 -0.9305 -0.4361 33 1 5.2579 -1.4924 -1.0085 34 1 5.6433 -0.8181 0.5931 35 1 4.7454 -2.3496 0.4649 36 1 0.3589 -2.2539 -1.4018 37 1 1.8912 -2.7742 -2.1433 38 1 0.8807 -3.9506 -1.2697 39 1 2.0678 -5.5545 0.5545 40 1 0.2985 -5.7914 0.2073 41 1 -1.0628 -4.8885 2.4014 42 1 0.1850 -4.3057 3.5889 43 1 2.7866 -6.8363 2.7493 44 1 2.6268 -5.1058 3.1362 45 1 2.6983 -6.4946 5.1998 46 1 1.1347 -5.6599 5.0327 47 1 0.7524 -7.9951 5.6702 48 1 1.7271 -8.5547 4.2881 49 1 0.1515 -9.9545 4.7870 50 1 0.5821 -8.0877 1.8400 51 1 -0.9338 -7.1514 1.9206 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982069210.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:16 Heat of formation + Delta-G solvation = 51.081328 kcal Electronic energy + Delta-G solvation = -31978.286064 eV Core-core repulsion = 27881.654337 eV Total energy + Delta-G solvation = -4096.631727 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -45.95441 -41.90659 -39.91713 -37.69648 -36.59741 -34.82406 -34.53783 -33.06043 -32.29983 -31.13406 -29.75123 -28.49967 -27.53919 -27.20975 -26.98255 -25.53506 -24.02215 -23.07495 -22.22022 -21.12885 -20.16525 -19.32031 -19.16257 -18.73390 -18.09555 -17.80267 -16.94071 -16.70978 -16.22490 -15.93944 -15.72806 -15.43385 -15.24822 -15.02118 -14.83643 -14.75993 -14.37928 -14.12796 -13.95006 -13.93311 -13.84045 -13.72656 -13.50193 -13.31469 -13.25104 -13.09013 -12.92265 -12.79091 -12.69875 -12.52914 -12.40599 -11.95826 -11.92760 -11.80985 -11.75395 -11.57064 -11.29721 -11.05204 -10.89227 -10.69339 -10.40460 -10.08819 -9.68805 -8.81992 -8.17392 -5.40797 0.47760 1.14442 1.58656 1.59376 1.65115 1.83374 1.86733 2.22221 2.65476 3.16418 3.21766 3.33270 3.35700 3.52635 3.70849 3.77467 3.80028 3.91887 4.05365 4.14239 4.24805 4.26927 4.27242 4.39661 4.44144 4.49279 4.54261 4.61288 4.61929 4.66197 4.69723 4.71796 4.77617 4.79210 4.84164 4.86522 4.90768 4.91186 5.02313 5.02500 5.07174 5.09436 5.22247 5.24493 5.26296 5.33597 5.38792 5.51908 5.91887 6.46639 6.75360 7.13494 7.13877 7.31646 7.81712 8.29072 9.05198 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020575 B = 0.002520 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.530595 B =11108.716958 C =11563.306727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.038 3.962 3 N -0.407 5.407 4 O 0.083 5.917 5 C -0.019 4.019 6 C -0.075 4.075 7 C -0.202 4.202 8 C -0.014 4.014 9 H 0.135 0.865 10 C -0.140 4.140 11 C 0.531 3.469 12 O -0.580 6.580 13 N -0.635 5.635 14 C 0.123 3.877 15 C -0.099 4.099 16 C 0.125 3.875 17 C -0.073 4.073 18 C -0.129 4.129 19 C 0.159 3.841 20 N -0.613 5.613 21 C -0.350 4.350 22 H 0.045 0.955 23 C -0.070 4.070 24 N -0.942 5.942 25 Si 1.108 2.892 26 H -0.275 1.275 27 H -0.293 1.293 28 H -0.285 1.285 29 C 0.163 3.837 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.119 0.881 40 H 0.107 0.893 41 H 0.072 0.928 42 H 0.052 0.948 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.039 0.961 47 H 0.031 0.969 48 H 0.012 0.988 49 H 0.257 0.743 50 H 0.031 0.969 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.830 12.492 -16.995 24.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.121 4.121 3 N -0.117 5.117 4 O 0.022 5.978 5 C -0.083 4.083 6 C -0.132 4.132 7 C -0.207 4.207 8 C -0.035 4.035 9 H 0.153 0.847 10 C -0.197 4.197 11 C 0.321 3.679 12 O -0.459 6.459 13 N -0.369 5.369 14 C 0.001 3.999 15 C -0.101 4.101 16 C 0.002 3.998 17 C -0.111 4.111 18 C -0.168 4.168 19 C 0.033 3.967 20 N -0.338 5.338 21 C -0.480 4.480 22 H 0.063 0.937 23 C -0.267 4.267 24 N -0.584 5.584 25 Si 0.933 3.067 26 H -0.201 1.201 27 H -0.219 1.219 28 H -0.212 1.212 29 C 0.038 3.962 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.133 0.867 34 H 0.114 0.886 35 H 0.123 0.877 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.137 0.863 40 H 0.125 0.875 41 H 0.090 0.910 42 H 0.070 0.930 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.058 0.942 47 H 0.050 0.950 48 H 0.030 0.970 49 H 0.067 0.933 50 H 0.049 0.951 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.706 13.763 -15.419 23.277 hybrid contribution -0.004 0.046 -0.569 0.571 sum 10.702 13.810 -15.989 23.683 Atomic orbital electron populations 1.20134 0.85933 1.03273 1.02701 1.23616 0.99424 0.88747 1.00269 1.73792 0.89935 1.24892 1.23051 1.84739 1.21172 1.23569 1.68333 1.24999 0.99356 0.83297 1.00626 1.20640 0.87935 0.98543 1.06038 1.20574 0.91958 0.96466 1.11668 1.19493 0.99703 0.90304 0.94006 0.84687 1.21837 1.00615 1.02870 0.94346 1.20751 0.81326 0.80475 0.85304 1.90696 1.55863 1.44002 1.55387 1.50132 1.53288 1.04889 1.28586 1.23459 1.04279 0.77222 0.94959 1.22448 0.96630 0.94436 0.96566 1.22984 0.96206 0.90279 0.90329 1.21051 0.94849 1.01586 0.93569 1.21857 0.99467 0.97652 0.97809 1.20643 0.87721 0.94247 0.94105 1.44244 1.03509 1.80043 1.05978 1.20075 0.86167 1.17905 1.23900 0.93721 1.27045 1.05634 0.91465 1.02598 1.70887 1.15402 1.31164 1.40902 0.82935 0.72924 0.75698 0.75124 1.20117 1.21901 1.21179 1.20913 0.97329 0.92699 0.85282 0.91525 0.90460 0.89889 0.86723 0.88648 0.87689 0.93019 0.89060 0.89784 0.86321 0.87526 0.90959 0.92984 0.90116 0.91453 0.91030 0.94247 0.95002 0.97043 0.93302 0.95110 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.58 8.75 71.24 0.62 -0.96 16 2 C 0.04 1.02 6.69 43.58 0.29 1.31 16 3 N -0.41 -11.79 12.07 -49.55 -0.60 -12.38 16 4 O 0.08 2.05 11.20 71.65 0.80 2.85 16 5 C -0.02 -0.35 7.49 25.04 0.19 -0.16 16 6 C -0.07 -0.57 10.25 71.24 0.73 0.16 16 7 C -0.20 -4.38 4.65 -19.73 -0.09 -4.47 16 8 C -0.01 -0.23 2.74 -12.29 -0.03 -0.26 16 9 H 0.14 1.40 7.00 -2.39 -0.02 1.38 16 10 C -0.14 -1.74 9.10 71.98 0.66 -1.08 16 11 C 0.53 13.51 7.11 87.66 0.62 14.13 16 12 O -0.58 -20.15 13.97 -3.04 -0.04 -20.20 16 13 N -0.63 -15.02 3.45 -843.17 -2.91 -17.93 16 14 C 0.12 2.11 6.72 86.30 0.58 2.69 16 15 C -0.10 -2.62 0.87 -52.04 -0.05 -2.67 16 16 C 0.12 3.78 7.81 86.30 0.67 4.45 16 17 C -0.07 -1.91 5.02 30.53 0.15 -1.76 16 18 C -0.13 -4.38 5.99 30.54 0.18 -4.20 16 19 C 0.16 6.96 4.65 86.19 0.40 7.36 16 20 N -0.61 -28.27 2.79 -700.48 -1.95 -30.22 16 21 C -0.35 -18.72 9.46 84.03 0.80 -17.93 16 22 H 0.05 2.41 7.93 -2.91 -0.02 2.39 16 23 C -0.07 -3.88 4.70 84.86 0.40 -3.48 16 24 N -0.94 -55.87 12.60 21.65 0.27 -55.60 16 25 Si 1.11 50.40 29.98 68.60 2.06 52.46 16 26 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 27 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 28 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 29 C 0.16 5.71 5.71 86.19 0.49 6.20 16 30 H 0.07 1.96 7.41 -2.39 -0.02 1.94 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.08 1.87 5.75 -2.39 -0.01 1.86 16 33 H 0.11 0.34 8.14 -2.38 -0.02 0.32 16 34 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.10 0.53 7.18 -2.39 -0.02 0.51 16 36 H 0.05 0.80 5.82 -2.39 -0.01 0.79 16 37 H 0.09 0.78 8.14 -2.39 -0.02 0.77 16 38 H 0.08 0.82 7.09 -2.39 -0.02 0.80 16 39 H 0.12 1.21 8.09 -2.39 -0.02 1.19 16 40 H 0.11 1.52 8.09 -2.39 -0.02 1.50 16 41 H 0.07 2.33 7.97 -2.39 -0.02 2.31 16 42 H 0.05 1.83 7.37 -2.39 -0.02 1.82 16 43 H 0.08 1.85 8.14 -2.39 -0.02 1.84 16 44 H 0.07 1.59 8.02 -2.39 -0.02 1.58 16 45 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.04 1.48 7.37 -2.39 -0.02 1.46 16 47 H 0.03 1.64 6.56 -2.39 -0.02 1.62 16 48 H 0.01 0.51 7.90 -2.39 -0.02 0.49 16 49 H 0.26 15.34 6.79 -92.71 -0.63 14.71 16 50 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.05 1.92 7.78 -2.39 -0.02 1.90 16 Total: -1.00 -76.08 396.22 5.32 -70.76 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 1.07 Total: 10.92 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 6.62 Total: -0.66 kcal Atomic # 7 Polarization: -110.95 SS G_CDS: -5.19 Total: -116.14 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: 0.76 Total: -17.35 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 2.06 Total: 52.46 kcal Total: -76.08 5.32 -70.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982069210.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.843 kcal (2) G-P(sol) polarization free energy of solvation -76.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds