Wall clock time and date at job start Wed Apr 1 2020 05:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34254 * 126.52475 * 2 1 4 4 C 1.34047 * 108.22428 * 180.02562 * 3 2 1 5 5 C 1.50702 * 125.37500 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47328 * 300.02464 * 5 4 3 7 7 C 1.52995 * 109.47205 * 60.02703 * 5 4 3 8 8 N 1.29930 * 109.24514 * 359.72376 * 4 3 2 9 9 C 1.36067 * 108.47527 * 0.43695 * 8 4 3 10 10 C 1.47418 * 126.44751 * 179.82704 * 9 8 4 11 11 O 1.21609 * 120.00203 * 179.69444 * 10 9 8 12 12 N 1.34779 * 120.00289 * 359.69010 * 10 9 8 13 13 C 1.46503 * 120.00565 * 180.02562 * 12 10 9 14 14 C 1.51222 * 111.06576 * 61.01332 * 13 12 10 15 15 C 1.55697 * 104.70598 * 83.81975 * 14 13 12 16 16 C 1.56562 * 105.79741 * 7.32208 * 15 14 13 17 17 C 1.50525 * 101.80608 * 24.19420 * 16 15 14 18 18 H 1.09002 * 107.74865 * 66.80978 * 17 16 15 19 19 N 1.42702 * 128.15260 * 198.72333 * 17 16 15 20 20 C 1.36932 * 127.10273 * 331.70594 * 19 17 16 21 21 H 1.08002 * 120.00357 * 0.02562 * 20 19 17 22 22 C 1.38813 * 120.00344 * 180.02562 * 20 19 17 23 23 N 1.31622 * 119.99589 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00640 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46705 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47185 * 120.00067 * 24 22 20 27 27 H 1.48498 * 109.47121 * 240.00496 * 24 22 20 28 28 C 1.49296 * 105.79349 * 151.70971 * 19 17 16 29 29 C 1.52136 * 111.48732 * 281.20581 * 13 12 10 30 30 H 1.09005 * 109.47387 * 269.97754 * 1 2 3 31 31 H 1.09008 * 109.47126 * 29.98298 * 1 2 3 32 32 H 1.09002 * 109.47323 * 149.97688 * 1 2 3 33 33 H 1.09006 * 109.46844 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.47289 * 300.00329 * 6 5 4 35 35 H 1.08997 * 109.46965 * 60.00323 * 6 5 4 36 36 H 1.09001 * 109.47367 * 180.02562 * 6 5 4 37 37 H 1.08997 * 109.47122 * 60.00044 * 7 5 4 38 38 H 1.09001 * 109.47163 * 180.02562 * 7 5 4 39 39 H 1.08997 * 109.47228 * 299.99763 * 7 5 4 40 40 H 0.97009 * 119.99672 * 0.02562 * 12 10 9 41 41 H 1.09002 * 110.40964 * 202.66157 * 14 13 12 42 42 H 1.09002 * 110.41125 * 324.98053 * 14 13 12 43 43 H 1.09009 * 110.15308 * 126.42747 * 15 14 13 44 44 H 1.09005 * 110.15798 * 248.18533 * 15 14 13 45 45 H 1.09003 * 110.92573 * 266.07150 * 16 15 14 46 46 H 1.08998 * 111.01151 * 142.35588 * 16 15 14 47 47 H 0.97004 * 120.00057 * 179.97438 * 23 22 20 48 48 H 1.08998 * 110.04764 * 110.60071 * 28 19 17 49 49 H 1.09000 * 110.04495 * 232.02230 * 28 19 17 50 50 H 1.08995 * 111.15269 * 43.77520 * 29 13 12 51 51 H 1.08994 * 111.14775 * 168.00900 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5787 0.6580 -0.0006 5 6 4.7929 1.5507 -0.0013 6 6 4.7756 2.4341 -1.2504 7 6 4.7775 2.4336 1.2481 8 7 3.6001 -0.6412 0.0050 9 6 2.3169 -1.0936 -0.0005 10 6 1.8853 -2.5032 -0.0007 11 8 0.7002 -2.7762 -0.0003 12 7 2.8039 -3.4893 -0.0013 13 6 2.3750 -4.8902 -0.0020 14 6 1.5619 -5.2090 -1.2365 15 6 2.6189 -5.5224 -2.3359 16 6 4.0020 -5.5468 -1.6029 17 6 3.5958 -5.8674 -0.1893 18 1 3.1970 -6.8818 -0.1801 19 7 4.3457 -5.6729 1.0091 20 6 5.7089 -5.6710 1.1394 21 1 6.3344 -5.8287 0.2732 22 6 6.2868 -5.4665 2.3847 23 7 5.5245 -5.2748 3.4405 24 14 8.1463 -5.4632 2.5625 25 1 8.7707 -5.6985 1.2358 26 1 8.5907 -4.1489 3.0920 27 1 8.5558 -6.5390 3.5006 28 6 3.3373 -5.4720 2.0914 29 6 1.9490 -5.3433 1.3864 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5136 32 1 -0.3634 -0.8898 -0.5142 33 1 5.6944 0.9378 -0.0021 34 1 4.7866 1.8051 -2.1405 35 1 3.8742 3.0469 -1.2495 36 1 5.6541 3.0795 -1.2512 37 1 4.7899 1.8042 2.1379 38 1 5.6555 3.0795 1.2473 39 1 3.8761 3.0463 1.2489 40 1 3.7493 -3.2715 -0.0013 41 1 0.9278 -6.0779 -1.0601 42 1 0.9564 -4.3499 -1.5252 43 1 2.4146 -6.4934 -2.7874 44 1 2.6099 -4.7436 -3.0985 45 1 4.4888 -4.5731 -1.6575 46 1 4.6464 -6.3261 -2.0098 47 1 5.9283 -5.1322 4.3109 48 1 3.3363 -6.3290 2.7650 49 1 3.5613 -4.5611 2.6465 50 1 1.3292 -4.5902 1.8729 51 1 1.4375 -6.3049 1.3465 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990692607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:08 Heat of formation + Delta-G solvation = 13.197107 kcal Electronic energy + Delta-G solvation = -32607.907686 eV Core-core repulsion = 28509.633176 eV Total energy + Delta-G solvation = -4098.274511 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.38094 -40.37459 -38.03452 -35.91444 -34.65465 -34.37735 -32.95420 -31.91279 -31.62844 -29.86115 -27.47160 -27.28675 -26.89190 -25.72620 -24.10535 -23.78815 -22.58482 -21.34009 -20.46198 -19.94279 -19.42249 -18.64906 -17.47370 -16.88207 -16.44782 -16.05525 -15.72901 -15.22449 -14.79592 -14.65432 -14.48057 -14.18923 -13.90654 -13.87762 -13.61070 -13.43790 -13.26558 -12.95764 -12.59434 -12.56242 -12.47177 -12.30820 -11.85448 -11.81771 -11.57259 -11.39394 -11.37491 -11.27591 -11.07015 -10.98179 -10.89817 -10.75167 -10.61036 -10.48163 -10.24992 -10.00389 -9.90829 -9.67201 -9.62966 -9.16276 -8.74543 -8.64838 -8.35756 -6.84019 -5.72245 -3.06680 1.21101 2.18096 2.49597 3.39697 3.45442 3.47677 3.51802 3.67457 3.88677 4.47674 4.54005 4.66879 4.76437 4.77233 4.88639 5.08839 5.21299 5.28376 5.32183 5.32959 5.37788 5.44355 5.50998 5.51322 5.58852 5.64105 5.68381 5.76564 5.85360 5.88766 5.92360 5.94736 5.98402 6.03182 6.06702 6.18935 6.20151 6.28871 6.38558 6.40977 6.48504 6.54290 6.67426 6.84801 6.95190 7.21268 7.53069 7.60065 7.62908 7.80168 8.15563 8.21968 8.68292 9.15539 9.82293 10.50774 11.40205 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008534 B = 0.004482 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3280.328140 B = 6245.428181 C = 8211.353877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.027 3.973 3 O -0.198 6.198 4 C 0.194 3.806 5 C 0.003 3.997 6 C -0.148 4.148 7 C -0.150 4.150 8 N -0.448 5.448 9 C -0.066 4.066 10 C 0.599 3.401 11 O -0.548 6.548 12 N -0.668 5.668 13 C 0.130 3.870 14 C -0.114 4.114 15 C -0.116 4.116 16 C -0.115 4.115 17 C 0.159 3.841 18 H 0.023 0.977 19 N -0.584 5.584 20 C -0.229 4.229 21 H 0.080 0.920 22 C -0.004 4.004 23 N -0.918 5.918 24 Si 0.909 3.091 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.177 3.823 29 C -0.138 4.138 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.414 0.586 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.252 0.748 48 H 0.036 0.964 49 H 0.065 0.935 50 H 0.064 0.936 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.972 13.286 -9.296 17.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.030 4.030 3 O -0.085 6.085 4 C -0.015 4.015 5 C -0.016 4.016 6 C -0.206 4.206 7 C -0.208 4.208 8 N -0.176 5.176 9 C -0.186 4.186 10 C 0.385 3.615 11 O -0.428 6.428 12 N -0.317 5.317 13 C 0.042 3.958 14 C -0.153 4.153 15 C -0.154 4.154 16 C -0.154 4.154 17 C 0.049 3.951 18 H 0.040 0.960 19 N -0.307 5.307 20 C -0.357 4.357 21 H 0.098 0.902 22 C -0.200 4.200 23 N -0.565 5.565 24 Si 0.740 3.260 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C 0.054 3.946 29 C -0.177 4.177 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.251 0.749 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.062 0.938 48 H 0.054 0.946 49 H 0.083 0.917 50 H 0.083 0.917 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.041 12.696 -9.093 17.130 hybrid contribution 0.980 0.473 0.357 1.146 sum -6.061 13.168 -8.736 16.925 Atomic orbital electron populations 1.20535 0.82723 1.05008 1.04476 1.23670 0.94980 0.83402 1.00904 1.84255 1.17977 1.36264 1.70009 1.26137 0.83934 0.90201 1.01199 1.19765 0.90118 0.94284 0.97473 1.21885 1.02947 0.99467 0.96324 1.21893 1.02902 0.99506 0.96485 1.70845 1.21731 1.08745 1.16319 1.21683 0.88665 0.95978 1.12263 1.16663 0.85647 0.82336 0.76896 1.90703 1.16283 1.83215 1.52551 1.45541 1.10315 1.04740 1.71145 1.21574 0.98519 0.81194 0.94470 1.21900 0.97263 1.01877 0.94234 1.22863 0.94407 1.00701 0.97479 1.21896 0.96258 1.01634 0.95613 1.20829 0.90546 0.95115 0.88610 0.95964 1.43684 1.01811 1.83815 1.01418 1.19055 0.80003 1.42589 0.94046 0.90241 1.24783 0.97808 1.01844 0.95603 1.69931 1.32875 1.55000 0.98717 0.86091 0.85229 0.77187 0.77533 1.20485 1.21804 1.21831 1.22020 0.82277 1.01023 0.89306 1.22797 0.99601 1.00138 0.95209 0.89293 0.90630 0.86932 0.86578 0.91915 0.91961 0.90868 0.91685 0.90852 0.91973 0.74873 0.91137 0.90590 0.91965 0.92385 0.91590 0.91813 0.93794 0.94599 0.91693 0.91740 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 9.88 36.01 0.36 -0.45 16 2 C 0.03 0.39 7.44 -35.08 -0.26 0.13 16 3 O -0.20 -2.76 10.73 6.53 0.07 -2.69 16 4 C 0.19 2.78 6.81 -13.08 -0.09 2.69 16 5 C 0.00 0.03 3.39 -91.77 -0.31 -0.28 16 6 C -0.15 -1.19 9.18 37.16 0.34 -0.85 16 7 C -0.15 -1.33 9.18 37.16 0.34 -0.99 16 8 N -0.45 -7.82 11.06 -7.66 -0.08 -7.90 16 9 C -0.07 -1.15 6.99 -83.02 -0.58 -1.73 16 10 C 0.60 11.32 7.25 -12.52 -0.09 11.23 16 11 O -0.55 -10.51 13.01 5.27 0.07 -10.45 16 12 N -0.67 -13.08 4.34 -47.64 -0.21 -13.29 16 13 C 0.13 2.49 0.43 -130.71 -0.06 2.43 16 14 C -0.11 -1.88 5.96 -26.19 -0.16 -2.04 16 15 C -0.12 -1.74 6.96 -23.38 -0.16 -1.91 16 16 C -0.12 -2.04 6.47 -26.05 -0.17 -2.21 16 17 C 0.16 3.29 2.62 -68.72 -0.18 3.11 16 18 H 0.02 0.49 7.97 -51.93 -0.41 0.07 16 19 N -0.58 -14.51 3.06 -162.68 -0.50 -15.00 16 20 C -0.23 -6.21 10.29 -15.06 -0.15 -6.36 16 21 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 22 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 23 N -0.92 -26.81 10.55 55.49 0.59 -26.23 16 24 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 C 0.18 4.35 5.35 -0.75 0.00 4.35 16 29 C -0.14 -2.81 6.32 -25.44 -0.16 -2.97 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.11 1.38 6.48 -51.93 -0.34 1.05 16 33 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.41 8.79 7.69 -40.82 -0.31 8.47 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.08 1.30 6.20 -51.93 -0.32 0.98 16 43 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.07 1.22 7.51 -51.93 -0.39 0.83 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.04 0.95 7.98 -51.93 -0.41 0.54 16 49 H 0.06 1.79 7.05 -51.93 -0.37 1.43 16 50 H 0.06 1.33 7.89 -51.93 -0.41 0.92 16 51 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 402.51 15.07 6.07 6.07 Total: -1.00 -31.38 402.51 -8.89 -40.27 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -8.43 Total: 8.30 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -1.43 Total: 3.95 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: -0.20 Total: -62.42 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.14 Total: -13.14 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.38 -8.89 -40.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990692607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.467 kcal (2) G-P(sol) polarization free energy of solvation -31.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds