Wall clock time and date at job start Wed Apr 1 2020 05:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34254 * 126.52475 * 2 1 4 4 C 1.34047 * 108.22428 * 180.02562 * 3 2 1 5 5 C 1.50702 * 125.37500 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47328 * 300.02464 * 5 4 3 7 7 C 1.52995 * 109.47205 * 60.02703 * 5 4 3 8 8 N 1.29930 * 109.24514 * 359.72376 * 4 3 2 9 9 C 1.36067 * 108.47527 * 0.43695 * 8 4 3 10 10 C 1.47418 * 126.44751 * 179.82704 * 9 8 4 11 11 O 1.21609 * 120.00203 * 179.69444 * 10 9 8 12 12 N 1.34779 * 120.00289 * 359.69010 * 10 9 8 13 13 C 1.46503 * 120.00565 * 180.02562 * 12 10 9 14 14 C 1.51222 * 111.06576 * 61.01332 * 13 12 10 15 15 C 1.55697 * 104.70598 * 83.81975 * 14 13 12 16 16 C 1.56562 * 105.79741 * 7.32208 * 15 14 13 17 17 C 1.50525 * 101.80608 * 24.19420 * 16 15 14 18 18 H 1.09002 * 107.74865 * 66.80978 * 17 16 15 19 19 N 1.42702 * 128.15260 * 198.72333 * 17 16 15 20 20 C 1.36932 * 127.10273 * 331.70594 * 19 17 16 21 21 H 1.08002 * 120.00357 * 0.02562 * 20 19 17 22 22 C 1.38813 * 120.00344 * 180.02562 * 20 19 17 23 23 N 1.31622 * 119.99589 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00640 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46705 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.47185 * 120.00067 * 24 22 20 27 27 H 1.48498 * 109.47121 * 240.00496 * 24 22 20 28 28 C 1.49296 * 105.79349 * 151.70971 * 19 17 16 29 29 C 1.52136 * 111.48732 * 281.20581 * 13 12 10 30 30 H 1.09005 * 109.47387 * 269.97754 * 1 2 3 31 31 H 1.09008 * 109.47126 * 29.98298 * 1 2 3 32 32 H 1.09002 * 109.47323 * 149.97688 * 1 2 3 33 33 H 1.09006 * 109.46844 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.47289 * 300.00329 * 6 5 4 35 35 H 1.08997 * 109.46965 * 60.00323 * 6 5 4 36 36 H 1.09001 * 109.47367 * 180.02562 * 6 5 4 37 37 H 1.08997 * 109.47122 * 60.00044 * 7 5 4 38 38 H 1.09001 * 109.47163 * 180.02562 * 7 5 4 39 39 H 1.08997 * 109.47228 * 299.99763 * 7 5 4 40 40 H 0.97009 * 119.99672 * 0.02562 * 12 10 9 41 41 H 1.09002 * 110.40964 * 202.66157 * 14 13 12 42 42 H 1.09002 * 110.41125 * 324.98053 * 14 13 12 43 43 H 1.09009 * 110.15308 * 126.42747 * 15 14 13 44 44 H 1.09005 * 110.15798 * 248.18533 * 15 14 13 45 45 H 1.09003 * 110.92573 * 266.07150 * 16 15 14 46 46 H 1.08998 * 111.01151 * 142.35588 * 16 15 14 47 47 H 0.97004 * 120.00057 * 179.97438 * 23 22 20 48 48 H 1.08998 * 110.04764 * 110.60071 * 28 19 17 49 49 H 1.09000 * 110.04495 * 232.02230 * 28 19 17 50 50 H 1.08995 * 111.15269 * 43.77520 * 29 13 12 51 51 H 1.08994 * 111.14775 * 168.00900 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5787 0.6580 -0.0006 5 6 4.7929 1.5507 -0.0013 6 6 4.7756 2.4341 -1.2504 7 6 4.7775 2.4336 1.2481 8 7 3.6001 -0.6412 0.0050 9 6 2.3169 -1.0936 -0.0005 10 6 1.8853 -2.5032 -0.0007 11 8 0.7002 -2.7762 -0.0003 12 7 2.8039 -3.4893 -0.0013 13 6 2.3750 -4.8902 -0.0020 14 6 1.5619 -5.2090 -1.2365 15 6 2.6189 -5.5224 -2.3359 16 6 4.0020 -5.5468 -1.6029 17 6 3.5958 -5.8674 -0.1893 18 1 3.1970 -6.8818 -0.1801 19 7 4.3457 -5.6729 1.0091 20 6 5.7089 -5.6710 1.1394 21 1 6.3344 -5.8287 0.2732 22 6 6.2868 -5.4665 2.3847 23 7 5.5245 -5.2748 3.4405 24 14 8.1463 -5.4632 2.5625 25 1 8.7707 -5.6985 1.2358 26 1 8.5907 -4.1489 3.0920 27 1 8.5558 -6.5390 3.5006 28 6 3.3373 -5.4720 2.0914 29 6 1.9490 -5.3433 1.3864 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5136 32 1 -0.3634 -0.8898 -0.5142 33 1 5.6944 0.9378 -0.0021 34 1 4.7866 1.8051 -2.1405 35 1 3.8742 3.0469 -1.2495 36 1 5.6541 3.0795 -1.2512 37 1 4.7899 1.8042 2.1379 38 1 5.6555 3.0795 1.2473 39 1 3.8761 3.0463 1.2489 40 1 3.7493 -3.2715 -0.0013 41 1 0.9278 -6.0779 -1.0601 42 1 0.9564 -4.3499 -1.5252 43 1 2.4146 -6.4934 -2.7874 44 1 2.6099 -4.7436 -3.0985 45 1 4.4888 -4.5731 -1.6575 46 1 4.6464 -6.3261 -2.0098 47 1 5.9283 -5.1322 4.3109 48 1 3.3363 -6.3290 2.7650 49 1 3.5613 -4.5611 2.6465 50 1 1.3292 -4.5902 1.8729 51 1 1.4375 -6.3049 1.3465 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990692607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:07 Heat of formation + Delta-G solvation = -7.352072 kcal Electronic energy + Delta-G solvation = -32608.798765 eV Core-core repulsion = 28509.633176 eV Total energy + Delta-G solvation = -4099.165590 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.54358 -41.93610 -39.54488 -36.77411 -36.16877 -35.85048 -34.43056 -33.55696 -32.94602 -31.61771 -28.60397 -28.40497 -28.13838 -27.24680 -25.98924 -25.07239 -23.63140 -22.58582 -22.13047 -21.37682 -20.87110 -20.15148 -18.80260 -18.36028 -18.03931 -17.41567 -17.10171 -16.51409 -16.29950 -16.16150 -15.73682 -15.67804 -15.56475 -15.10498 -14.99418 -14.50070 -14.34419 -14.18703 -14.08985 -13.78842 -13.51425 -13.47644 -13.07727 -13.07134 -13.01715 -12.88155 -12.69986 -12.62681 -12.46121 -12.22008 -12.17244 -12.10645 -12.03046 -12.01655 -11.83758 -11.81305 -11.58599 -11.40109 -11.14265 -10.79931 -10.69018 -10.06216 -9.75023 -8.88432 -7.85304 -5.20820 0.01879 0.95215 1.40311 1.45223 1.45661 1.55848 2.13416 2.28630 2.49084 2.78352 3.06663 3.34856 3.54486 3.62824 3.78555 3.87397 3.89356 4.02434 4.08384 4.15444 4.24580 4.25321 4.35322 4.40258 4.42976 4.56412 4.57159 4.60706 4.72983 4.77265 4.78175 4.86409 4.87137 4.90473 4.94093 4.96725 5.03835 5.07662 5.09839 5.12992 5.21226 5.24894 5.25915 5.28267 5.47061 5.53720 5.57814 5.64706 5.75848 6.16910 6.37447 6.65370 7.03386 7.17443 7.75671 8.47444 9.26838 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008534 B = 0.004482 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3280.328140 B = 6245.428181 C = 8211.353877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.041 3.959 3 O -0.191 6.191 4 C 0.202 3.798 5 C -0.001 4.001 6 C -0.141 4.141 7 C -0.145 4.145 8 N -0.489 5.489 9 C -0.107 4.107 10 C 0.599 3.401 11 O -0.555 6.555 12 N -0.676 5.676 13 C 0.137 3.863 14 C -0.108 4.108 15 C -0.102 4.102 16 C -0.111 4.111 17 C 0.146 3.854 18 H 0.025 0.975 19 N -0.598 5.598 20 C -0.231 4.231 21 H 0.086 0.914 22 C -0.062 4.062 23 N -0.951 5.951 24 Si 0.973 3.027 25 H -0.263 1.263 26 H -0.295 1.295 27 H -0.295 1.295 28 C 0.190 3.810 29 C -0.126 4.126 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.044 0.956 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.403 0.597 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.070 0.930 45 H 0.052 0.948 46 H 0.072 0.928 47 H 0.245 0.755 48 H 0.005 0.995 49 H 0.024 0.976 50 H 0.058 0.942 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.423 14.598 -11.552 20.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.016 4.016 3 O -0.078 6.078 4 C -0.008 4.008 5 C -0.020 4.020 6 C -0.199 4.199 7 C -0.203 4.203 8 N -0.218 5.218 9 C -0.226 4.226 10 C 0.385 3.615 11 O -0.435 6.435 12 N -0.323 5.323 13 C 0.049 3.951 14 C -0.147 4.147 15 C -0.140 4.140 16 C -0.150 4.150 17 C 0.037 3.963 18 H 0.043 0.957 19 N -0.322 5.322 20 C -0.360 4.360 21 H 0.104 0.896 22 C -0.255 4.255 23 N -0.600 5.600 24 Si 0.802 3.198 25 H -0.187 1.187 26 H -0.223 1.223 27 H -0.222 1.222 28 C 0.065 3.935 29 C -0.165 4.165 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.121 0.879 33 H 0.129 0.871 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.063 0.937 38 H 0.119 0.881 39 H 0.087 0.913 40 H 0.238 0.762 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.089 0.911 45 H 0.071 0.929 46 H 0.091 0.909 47 H 0.054 0.946 48 H 0.023 0.977 49 H 0.043 0.957 50 H 0.077 0.923 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.517 13.993 -11.397 19.550 hybrid contribution 1.105 0.112 1.073 1.544 sum -6.412 14.105 -10.324 18.619 Atomic orbital electron populations 1.20682 0.80185 1.06166 1.05453 1.24249 0.96248 0.82742 0.98315 1.84291 1.17886 1.35779 1.69852 1.26970 0.84878 0.89916 0.99039 1.20062 0.88097 0.94294 0.99558 1.21866 1.04490 0.99121 0.94405 1.21887 1.04570 0.99200 0.94642 1.70798 1.22224 1.10478 1.18296 1.21644 0.89558 0.95948 1.15411 1.16847 0.85437 0.82894 0.76308 1.90677 1.16274 1.83611 1.52973 1.45590 1.09818 1.05157 1.71784 1.21609 0.97987 0.80835 0.94639 1.21903 0.97435 1.02394 0.92948 1.22804 0.91663 1.02733 0.96819 1.21900 0.98166 1.01128 0.93803 1.21062 0.90848 0.95487 0.88903 0.95746 1.43809 1.01466 1.83716 1.03172 1.19411 0.81398 1.41052 0.94122 0.89621 1.25577 1.01966 1.02510 0.95495 1.70150 1.34357 1.56684 0.98825 0.85083 0.80390 0.76487 0.77856 1.18742 1.22276 1.22191 1.21686 0.84823 0.97624 0.89340 1.22663 0.96908 1.01185 0.95753 0.88178 0.87295 0.87856 0.87112 0.92730 0.91418 0.88254 0.93686 0.88131 0.91313 0.76152 0.89387 0.91028 0.89222 0.91092 0.92894 0.90885 0.94613 0.97668 0.95741 0.92323 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.43 9.88 71.24 0.70 -0.72 16 2 C 0.04 1.19 7.44 25.18 0.19 1.38 16 3 O -0.19 -5.13 10.73 0.43 0.00 -5.12 16 4 C 0.20 5.72 6.81 88.39 0.60 6.33 16 5 C 0.00 -0.02 3.39 -11.54 -0.04 -0.05 16 6 C -0.14 -1.97 9.18 71.98 0.66 -1.31 16 7 C -0.15 -2.36 9.18 71.98 0.66 -1.70 16 8 N -0.49 -17.56 11.06 -293.05 -3.24 -20.80 16 9 C -0.11 -3.80 6.99 40.41 0.28 -3.52 16 10 C 0.60 22.96 7.25 86.66 0.63 23.59 16 11 O -0.55 -21.22 13.01 -4.06 -0.05 -21.27 16 12 N -0.68 -27.05 4.34 -422.88 -1.83 -28.88 16 13 C 0.14 5.19 0.43 4.32 0.00 5.20 16 14 C -0.11 -3.34 5.96 30.94 0.18 -3.16 16 15 C -0.10 -2.77 6.96 32.77 0.23 -2.54 16 16 C -0.11 -3.79 6.47 31.04 0.20 -3.59 16 17 C 0.15 5.99 2.62 46.47 0.12 6.11 16 18 H 0.03 1.03 7.97 -2.39 -0.02 1.01 16 19 N -0.60 -30.56 3.06 -668.58 -2.04 -32.61 16 20 C -0.23 -12.80 10.29 84.03 0.86 -11.94 16 21 H 0.09 4.53 7.83 -2.91 -0.02 4.51 16 22 C -0.06 -3.58 5.49 84.86 0.47 -3.11 16 23 N -0.95 -58.20 10.55 21.65 0.23 -57.97 16 24 Si 0.97 46.25 29.55 68.60 2.03 48.28 16 25 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 26 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 27 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 28 C 0.19 9.77 5.35 86.96 0.47 10.24 16 29 C -0.13 -5.21 6.32 31.43 0.20 -5.01 16 30 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.10 2.40 6.48 -2.39 -0.02 2.39 16 33 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.40 17.86 7.69 -92.70 -0.71 17.15 16 41 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.07 2.32 6.20 -2.39 -0.01 2.30 16 43 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 44 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 45 H 0.05 1.93 7.51 -2.39 -0.02 1.91 16 46 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.24 14.65 8.31 -92.71 -0.77 13.88 16 48 H 0.01 0.29 7.98 -2.39 -0.02 0.27 16 49 H 0.02 1.44 7.05 -2.39 -0.02 1.42 16 50 H 0.06 2.47 7.89 -2.39 -0.02 2.46 16 51 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -71.44 402.51 1.73 -69.71 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: 0.22 Total: 32.45 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 6.42 Total: 16.20 kcal Atomic # 7 Polarization: -133.36 SS G_CDS: -6.89 Total: -140.25 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.05 Total: -26.39 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -71.44 1.73 -69.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990692607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.362 kcal (2) G-P(sol) polarization free energy of solvation -71.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds