Wall clock time and date at job start Wed Apr 1 2020 05:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.34252 * 126.52828 * 2 1 4 4 C 1.34049 * 108.22812 * 180.16381 * 3 2 1 5 5 C 1.50698 * 125.38221 * 179.83315 * 4 3 2 6 6 C 1.53006 * 109.47184 * 59.68586 * 5 4 3 7 7 C 1.52999 * 109.46824 * 299.69338 * 5 4 3 8 8 N 1.29940 * 109.23947 * 359.55966 * 4 3 2 9 9 C 1.36058 * 108.47804 * 0.27360 * 8 4 3 10 10 C 1.47419 * 126.44768 * 180.02562 * 9 8 4 11 11 O 1.21614 * 120.00152 * 179.97438 * 10 9 8 12 12 N 1.34778 * 120.00283 * 359.96701 * 10 9 8 13 13 C 1.46501 * 120.00099 * 180.02562 * 12 10 9 14 14 C 1.53575 * 112.24464 * 297.64463 * 13 12 10 15 15 C 1.55463 * 106.05940 * 238.16840 * 14 13 12 16 16 C 1.54755 * 104.36168 * 335.36015 * 15 14 13 17 17 C 1.54772 * 103.21705 * 37.67858 * 16 15 14 18 18 H 1.08995 * 112.61326 * 85.33744 * 17 16 15 19 19 N 1.46979 * 108.69131 * 209.80106 * 17 16 15 20 20 C 1.36938 * 125.57769 * 294.13840 * 19 17 16 21 21 H 1.07995 * 120.00079 * 359.97335 * 20 19 17 22 22 C 1.38819 * 119.99502 * 179.97438 * 20 19 17 23 23 N 1.31615 * 120.00381 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99473 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47322 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46897 * 120.00117 * 24 22 20 27 27 H 1.48503 * 109.47461 * 240.00147 * 24 22 20 28 28 C 1.47366 * 108.83888 * 114.13601 * 19 17 16 29 29 C 1.54861 * 104.82358 * 335.30561 * 28 19 17 30 30 H 1.09004 * 109.47065 * 270.31852 * 1 2 3 31 31 H 1.09001 * 109.46827 * 30.30775 * 1 2 3 32 32 H 1.08990 * 109.47431 * 150.31354 * 1 2 3 33 33 H 1.08993 * 109.47304 * 179.68530 * 5 4 3 34 34 H 1.09001 * 109.46998 * 60.00038 * 6 5 4 35 35 H 1.09000 * 109.47050 * 180.02562 * 6 5 4 36 36 H 1.09001 * 109.46801 * 300.00442 * 6 5 4 37 37 H 1.09000 * 109.47160 * 179.97438 * 7 5 4 38 38 H 1.09002 * 109.46719 * 299.99679 * 7 5 4 39 39 H 1.08993 * 109.47839 * 59.99520 * 7 5 4 40 40 H 0.96998 * 119.99319 * 0.02562 * 12 10 9 41 41 H 1.09001 * 110.01745 * 358.13919 * 14 13 12 42 42 H 1.09003 * 110.02024 * 119.52813 * 14 13 12 43 43 H 1.09005 * 110.50368 * 216.56612 * 15 14 13 44 44 H 1.08996 * 110.39742 * 94.10103 * 15 14 13 45 45 H 1.09005 * 110.66476 * 279.24667 * 16 15 14 46 46 H 1.08996 * 110.67135 * 156.11883 * 16 15 14 47 47 H 0.96993 * 120.00214 * 180.02562 * 23 22 20 48 48 H 1.09000 * 110.37296 * 216.46697 * 28 19 17 49 49 H 1.09006 * 110.36985 * 94.14397 * 28 19 17 50 50 H 1.09000 * 110.96679 * 278.95480 * 29 28 19 51 51 H 1.09007 * 110.97072 * 155.19146 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6579 -0.0036 5 6 4.7931 1.5504 -0.0085 6 6 4.7768 2.4405 1.2359 7 6 4.7767 2.4269 -1.2625 8 7 3.6002 -0.6413 0.0035 9 6 2.3170 -1.0936 0.0059 10 6 1.8853 -2.5032 0.0142 11 8 0.7002 -2.7762 0.0161 12 7 2.8039 -3.4894 0.0196 13 6 2.3748 -4.8901 0.0273 14 6 1.5739 -5.2460 1.2884 15 6 2.3435 -6.4110 1.9721 16 6 3.1331 -7.0776 0.8201 17 6 3.5706 -5.8755 -0.0511 18 1 4.4969 -5.4197 0.2984 19 7 3.6735 -6.3192 -1.4485 20 6 4.5788 -7.2258 -1.9319 21 1 5.2979 -7.6787 -1.2655 22 6 4.5722 -7.5625 -3.2786 23 7 3.6962 -7.0102 -4.0908 24 14 5.8077 -8.7986 -3.9382 25 1 6.6769 -9.2693 -2.8300 26 1 5.0851 -9.9555 -4.5254 27 1 6.6428 -8.1543 -4.9835 28 6 2.6429 -5.6289 -2.2441 29 6 1.5386 -5.2564 -1.2243 30 1 -0.3633 0.0057 1.0277 31 1 -0.3633 0.8872 -0.5186 32 1 -0.3634 -0.8927 -0.5089 33 1 5.6944 0.9377 -0.0051 34 1 4.7883 1.8162 2.1294 35 1 5.6548 3.0864 1.2322 36 1 3.8753 3.0533 1.2325 37 1 5.6547 3.0728 -1.2658 38 1 4.7883 1.7928 -2.1490 39 1 3.8753 3.0396 -1.2659 40 1 3.7491 -3.2716 0.0184 41 1 1.5131 -4.3805 1.9483 42 1 0.5725 -5.5771 1.0135 43 1 1.6456 -7.1204 2.4170 44 1 3.0260 -6.0233 2.7283 45 1 2.4906 -7.7507 0.2524 46 1 4.0025 -7.6092 1.2069 47 1 3.6913 -7.2458 -5.0317 48 1 2.2440 -6.2956 -3.0086 49 1 3.0558 -4.7298 -2.7016 50 1 0.8893 -6.1087 -1.0238 51 1 0.9600 -4.4002 -1.5711 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990692618.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:11 Heat of formation + Delta-G solvation = 0.872933 kcal Electronic energy + Delta-G solvation = -31964.217500 eV Core-core repulsion = 27865.408573 eV Total energy + Delta-G solvation = -4098.808927 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.53066 -40.05492 -38.02911 -36.05425 -34.80695 -34.20806 -33.29654 -32.02627 -31.36927 -29.77515 -27.59351 -27.48348 -26.66779 -25.92882 -23.95122 -23.75049 -22.69510 -21.52560 -20.49786 -19.94236 -19.36147 -18.67133 -17.48412 -17.02556 -16.96747 -16.18920 -15.79714 -15.15107 -14.91240 -14.76071 -14.54798 -14.22589 -13.91614 -13.68733 -13.65341 -13.46615 -13.09582 -13.00346 -12.74297 -12.66407 -12.58585 -12.14161 -11.97097 -11.81680 -11.69052 -11.64738 -11.41227 -11.25264 -11.12359 -10.95372 -10.81861 -10.80238 -10.64395 -10.50256 -10.14924 -10.04172 -9.91509 -9.74553 -9.60150 -9.40867 -8.87225 -8.62195 -8.45370 -6.81280 -5.60906 -3.03889 1.07380 2.00727 2.35631 3.32922 3.41403 3.46759 3.49298 3.50191 3.71658 4.40788 4.50313 4.62906 4.63842 4.71384 4.89447 5.02419 5.11650 5.18931 5.21424 5.24869 5.34284 5.37087 5.39452 5.46566 5.55226 5.55661 5.69941 5.77615 5.79444 5.82124 5.84224 5.90455 5.95866 6.02636 6.05158 6.11078 6.18906 6.32145 6.40719 6.45522 6.57286 6.63993 6.81215 6.83783 7.02943 7.15990 7.42655 7.59988 7.68893 7.88497 7.93806 8.40336 8.48810 9.25215 9.86225 10.50726 11.41739 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011505 B = 0.003134 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.035921 B = 8931.641195 C =10056.601334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.033 3.967 3 O -0.196 6.196 4 C 0.196 3.804 5 C 0.003 3.997 6 C -0.149 4.149 7 C -0.151 4.151 8 N -0.454 5.454 9 C -0.069 4.069 10 C 0.602 3.398 11 O -0.535 6.535 12 N -0.685 5.685 13 C 0.159 3.841 14 C -0.111 4.111 15 C -0.124 4.124 16 C -0.128 4.128 17 C 0.162 3.838 18 H 0.047 0.953 19 N -0.596 5.596 20 C -0.218 4.218 21 H 0.078 0.922 22 C -0.011 4.011 23 N -0.920 5.920 24 Si 0.912 3.088 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.292 1.292 28 C 0.152 3.848 29 C -0.142 4.142 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.407 0.593 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.075 0.925 46 H 0.058 0.942 47 H 0.250 0.750 48 H 0.108 0.892 49 H 0.008 0.992 50 H 0.068 0.932 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.532 18.220 11.177 21.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.024 4.024 3 O -0.083 6.083 4 C -0.014 4.014 5 C -0.016 4.016 6 C -0.207 4.207 7 C -0.208 4.208 8 N -0.183 5.183 9 C -0.189 4.189 10 C 0.387 3.613 11 O -0.413 6.413 12 N -0.333 5.333 13 C 0.073 3.927 14 C -0.150 4.150 15 C -0.162 4.162 16 C -0.168 4.168 17 C 0.054 3.946 18 H 0.064 0.936 19 N -0.320 5.320 20 C -0.346 4.346 21 H 0.095 0.905 22 C -0.207 4.207 23 N -0.569 5.569 24 Si 0.743 3.257 25 H -0.206 1.206 26 H -0.218 1.218 27 H -0.219 1.219 28 C 0.028 3.972 29 C -0.181 4.181 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.243 0.757 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.077 0.923 47 H 0.061 0.939 48 H 0.126 0.874 49 H 0.026 0.974 50 H 0.087 0.913 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.752 17.531 10.948 20.851 hybrid contribution 0.675 -0.025 -0.431 0.802 sum -2.077 17.507 10.516 20.528 Atomic orbital electron populations 1.20574 0.82569 1.05397 1.04440 1.23718 0.95058 0.83309 1.00266 1.84268 1.17927 1.36259 1.69881 1.26137 0.84035 0.90146 1.01036 1.19768 0.89954 0.94278 0.97586 1.21896 1.03082 0.99443 0.96299 1.21900 1.03052 0.99585 0.96305 1.70775 1.21795 1.08883 1.16844 1.21643 0.88692 0.95902 1.12689 1.16634 0.85698 0.82248 0.76723 1.90748 1.16134 1.83095 1.51304 1.45708 1.09856 1.05264 1.72515 1.21727 0.95965 0.78941 0.96083 1.22495 0.98902 0.97827 0.95729 1.22568 0.98656 0.97096 0.97914 1.22912 0.99402 0.98603 0.95860 1.21785 0.93535 0.91514 0.87758 0.93560 1.44534 1.37549 1.48155 1.01726 1.19087 1.08463 1.14757 0.92328 0.90454 1.24779 0.99430 1.00406 0.96045 1.69814 1.37171 1.46057 1.03822 0.86026 0.80328 0.80609 0.78699 1.20557 1.21825 1.21879 1.21971 0.86389 0.95857 0.93009 1.23342 0.98514 1.00389 0.95874 0.89249 0.90409 0.86741 0.86656 0.91902 0.90800 0.91883 0.90789 0.91709 0.91881 0.75750 0.92253 0.91071 0.92238 0.92396 0.90641 0.92295 0.93862 0.87430 0.97388 0.91299 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 9.88 36.01 0.36 -0.41 16 2 C 0.03 0.44 7.44 -35.08 -0.26 0.18 16 3 O -0.20 -2.46 10.73 6.52 0.07 -2.39 16 4 C 0.20 2.44 6.81 -13.08 -0.09 2.35 16 5 C 0.00 0.03 3.39 -91.77 -0.31 -0.28 16 6 C -0.15 -0.98 9.18 37.16 0.34 -0.64 16 7 C -0.15 -1.07 9.17 37.16 0.34 -0.73 16 8 N -0.45 -6.90 11.06 -7.66 -0.08 -6.99 16 9 C -0.07 -1.10 6.99 -83.03 -0.58 -1.68 16 10 C 0.60 10.58 7.00 -12.52 -0.09 10.49 16 11 O -0.53 -9.89 12.61 5.27 0.07 -9.82 16 12 N -0.68 -12.30 5.22 -46.41 -0.24 -12.54 16 13 C 0.16 3.00 0.74 -129.38 -0.10 2.90 16 14 C -0.11 -1.85 5.41 -25.12 -0.14 -1.98 16 15 C -0.12 -1.91 6.87 -24.50 -0.17 -2.07 16 16 C -0.13 -2.36 6.22 -24.87 -0.15 -2.51 16 17 C 0.16 3.36 3.67 -65.60 -0.24 3.12 16 18 H 0.05 0.96 7.96 -51.93 -0.41 0.55 16 19 N -0.60 -15.02 3.03 -161.14 -0.49 -15.50 16 20 C -0.22 -5.98 10.01 -15.06 -0.15 -6.13 16 21 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 22 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 23 N -0.92 -27.00 10.07 55.49 0.56 -26.44 16 24 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 C 0.15 3.83 5.90 -2.59 -0.02 3.82 16 29 C -0.14 -2.99 5.71 -24.74 -0.14 -3.13 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.11 1.37 6.48 -51.93 -0.34 1.04 16 33 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.41 7.20 8.21 -40.82 -0.34 6.87 16 41 H 0.06 0.98 7.58 -51.93 -0.39 0.58 16 42 H 0.07 1.20 7.37 -51.93 -0.38 0.82 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.07 1.53 8.09 -51.93 -0.42 1.11 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.11 3.03 5.82 -51.93 -0.30 2.73 16 49 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 50 H 0.07 1.43 7.63 -51.93 -0.40 1.03 16 51 H 0.07 1.45 6.53 -51.92 -0.34 1.11 16 LS Contribution 401.12 15.07 6.04 6.04 Total: -1.00 -31.73 401.12 -8.95 -40.68 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -8.36 Total: 6.97 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -1.49 Total: 2.88 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: -0.26 Total: -61.47 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.14 Total: -12.21 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.73 -8.95 -40.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990692618.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.554 kcal (2) G-P(sol) polarization free energy of solvation -31.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds