Wall clock time and date at job start Wed Apr 1 2020 05:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.34252 * 126.52828 * 2 1 4 4 C 1.34049 * 108.22812 * 180.16381 * 3 2 1 5 5 C 1.50698 * 125.38221 * 179.83315 * 4 3 2 6 6 C 1.53006 * 109.47184 * 59.68586 * 5 4 3 7 7 C 1.52999 * 109.46824 * 299.69338 * 5 4 3 8 8 N 1.29940 * 109.23947 * 359.55966 * 4 3 2 9 9 C 1.36058 * 108.47804 * 0.27360 * 8 4 3 10 10 C 1.47419 * 126.44768 * 180.02562 * 9 8 4 11 11 O 1.21614 * 120.00152 * 179.97438 * 10 9 8 12 12 N 1.34778 * 120.00283 * 359.96701 * 10 9 8 13 13 C 1.46501 * 120.00099 * 180.02562 * 12 10 9 14 14 C 1.53575 * 112.24464 * 297.64463 * 13 12 10 15 15 C 1.55463 * 106.05940 * 238.16840 * 14 13 12 16 16 C 1.54755 * 104.36168 * 335.36015 * 15 14 13 17 17 C 1.54772 * 103.21705 * 37.67858 * 16 15 14 18 18 H 1.08995 * 112.61326 * 85.33744 * 17 16 15 19 19 N 1.46979 * 108.69131 * 209.80106 * 17 16 15 20 20 C 1.36938 * 125.57769 * 294.13840 * 19 17 16 21 21 H 1.07995 * 120.00079 * 359.97335 * 20 19 17 22 22 C 1.38819 * 119.99502 * 179.97438 * 20 19 17 23 23 N 1.31615 * 120.00381 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99473 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47322 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46897 * 120.00117 * 24 22 20 27 27 H 1.48503 * 109.47461 * 240.00147 * 24 22 20 28 28 C 1.47366 * 108.83888 * 114.13601 * 19 17 16 29 29 C 1.54861 * 104.82358 * 335.30561 * 28 19 17 30 30 H 1.09004 * 109.47065 * 270.31852 * 1 2 3 31 31 H 1.09001 * 109.46827 * 30.30775 * 1 2 3 32 32 H 1.08990 * 109.47431 * 150.31354 * 1 2 3 33 33 H 1.08993 * 109.47304 * 179.68530 * 5 4 3 34 34 H 1.09001 * 109.46998 * 60.00038 * 6 5 4 35 35 H 1.09000 * 109.47050 * 180.02562 * 6 5 4 36 36 H 1.09001 * 109.46801 * 300.00442 * 6 5 4 37 37 H 1.09000 * 109.47160 * 179.97438 * 7 5 4 38 38 H 1.09002 * 109.46719 * 299.99679 * 7 5 4 39 39 H 1.08993 * 109.47839 * 59.99520 * 7 5 4 40 40 H 0.96998 * 119.99319 * 0.02562 * 12 10 9 41 41 H 1.09001 * 110.01745 * 358.13919 * 14 13 12 42 42 H 1.09003 * 110.02024 * 119.52813 * 14 13 12 43 43 H 1.09005 * 110.50368 * 216.56612 * 15 14 13 44 44 H 1.08996 * 110.39742 * 94.10103 * 15 14 13 45 45 H 1.09005 * 110.66476 * 279.24667 * 16 15 14 46 46 H 1.08996 * 110.67135 * 156.11883 * 16 15 14 47 47 H 0.96993 * 120.00214 * 180.02562 * 23 22 20 48 48 H 1.09000 * 110.37296 * 216.46697 * 28 19 17 49 49 H 1.09006 * 110.36985 * 94.14397 * 28 19 17 50 50 H 1.09000 * 110.96679 * 278.95480 * 29 28 19 51 51 H 1.09007 * 110.97072 * 155.19146 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6579 -0.0036 5 6 4.7931 1.5504 -0.0085 6 6 4.7768 2.4405 1.2359 7 6 4.7767 2.4269 -1.2625 8 7 3.6002 -0.6413 0.0035 9 6 2.3170 -1.0936 0.0059 10 6 1.8853 -2.5032 0.0142 11 8 0.7002 -2.7762 0.0161 12 7 2.8039 -3.4894 0.0196 13 6 2.3748 -4.8901 0.0273 14 6 1.5739 -5.2460 1.2884 15 6 2.3435 -6.4110 1.9721 16 6 3.1331 -7.0776 0.8201 17 6 3.5706 -5.8755 -0.0511 18 1 4.4969 -5.4197 0.2984 19 7 3.6735 -6.3192 -1.4485 20 6 4.5788 -7.2258 -1.9319 21 1 5.2979 -7.6787 -1.2655 22 6 4.5722 -7.5625 -3.2786 23 7 3.6962 -7.0102 -4.0908 24 14 5.8077 -8.7986 -3.9382 25 1 6.6769 -9.2693 -2.8300 26 1 5.0851 -9.9555 -4.5254 27 1 6.6428 -8.1543 -4.9835 28 6 2.6429 -5.6289 -2.2441 29 6 1.5386 -5.2564 -1.2243 30 1 -0.3633 0.0057 1.0277 31 1 -0.3633 0.8872 -0.5186 32 1 -0.3634 -0.8927 -0.5089 33 1 5.6944 0.9377 -0.0051 34 1 4.7883 1.8162 2.1294 35 1 5.6548 3.0864 1.2322 36 1 3.8753 3.0533 1.2325 37 1 5.6547 3.0728 -1.2658 38 1 4.7883 1.7928 -2.1490 39 1 3.8753 3.0396 -1.2659 40 1 3.7491 -3.2716 0.0184 41 1 1.5131 -4.3805 1.9483 42 1 0.5725 -5.5771 1.0135 43 1 1.6456 -7.1204 2.4170 44 1 3.0260 -6.0233 2.7283 45 1 2.4906 -7.7507 0.2524 46 1 4.0025 -7.6092 1.2069 47 1 3.6913 -7.2458 -5.0317 48 1 2.2440 -6.2956 -3.0086 49 1 3.0558 -4.7298 -2.7016 50 1 0.8893 -6.1087 -1.0238 51 1 0.9600 -4.4002 -1.5711 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990692618.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:10 Heat of formation + Delta-G solvation = -20.191101 kcal Electronic energy + Delta-G solvation = -31965.130905 eV Core-core repulsion = 27865.408573 eV Total energy + Delta-G solvation = -4099.722332 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.56742 -41.57757 -39.53035 -36.77475 -36.04910 -35.88211 -34.69964 -33.31466 -32.96522 -31.54369 -28.62188 -28.42247 -28.12289 -27.35330 -25.74570 -25.01367 -23.63800 -22.79154 -21.94059 -21.49743 -20.65151 -20.19406 -18.93282 -18.71048 -18.05486 -17.38868 -17.03376 -16.87129 -16.11439 -16.09535 -15.87153 -15.60272 -15.18709 -15.07100 -14.82950 -14.54622 -14.42582 -14.32981 -13.90639 -13.78236 -13.55130 -13.47644 -13.20791 -13.06514 -12.94993 -12.83141 -12.67489 -12.62007 -12.49114 -12.33001 -12.16446 -12.00585 -12.00305 -11.92249 -11.87860 -11.71548 -11.62129 -11.50585 -11.26669 -10.96650 -10.74631 -10.09722 -9.78812 -8.88194 -7.74527 -5.19855 -0.00929 0.91190 1.38278 1.47016 1.47714 1.58056 2.02441 2.20889 2.50191 2.73969 3.32777 3.35121 3.52419 3.61441 3.67445 3.89725 3.93564 3.95157 4.03553 4.14337 4.23755 4.34681 4.36922 4.41818 4.46038 4.55176 4.56075 4.63347 4.74384 4.77905 4.79132 4.85148 4.86463 4.88474 4.93769 4.95843 5.07801 5.08738 5.11743 5.15567 5.21766 5.27978 5.29734 5.30504 5.45941 5.50557 5.63364 5.63998 5.81052 6.29377 6.29881 6.57229 7.09338 7.10974 7.78841 8.43397 9.27207 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011505 B = 0.003134 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.035921 B = 8931.641195 C =10056.601334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.044 3.956 3 O -0.191 6.191 4 C 0.203 3.797 5 C 0.001 3.999 6 C -0.143 4.143 7 C -0.147 4.147 8 N -0.486 5.486 9 C -0.105 4.105 10 C 0.601 3.399 11 O -0.548 6.548 12 N -0.689 5.689 13 C 0.167 3.833 14 C -0.103 4.103 15 C -0.109 4.109 16 C -0.121 4.121 17 C 0.153 3.847 18 H 0.049 0.951 19 N -0.611 5.611 20 C -0.224 4.224 21 H 0.085 0.915 22 C -0.070 4.070 23 N -0.952 5.952 24 Si 0.979 3.021 25 H -0.264 1.264 26 H -0.293 1.293 27 H -0.297 1.297 28 C 0.163 3.837 29 C -0.128 4.128 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.054 0.946 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.047 0.953 39 H 0.064 0.936 40 H 0.406 0.594 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.054 0.946 46 H 0.067 0.933 47 H 0.244 0.756 48 H 0.075 0.925 49 H -0.027 1.027 50 H 0.073 0.927 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.125 19.538 13.450 23.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.013 4.013 3 O -0.078 6.078 4 C -0.007 4.007 5 C -0.018 4.018 6 C -0.201 4.201 7 C -0.204 4.204 8 N -0.215 5.215 9 C -0.224 4.224 10 C 0.388 3.612 11 O -0.427 6.427 12 N -0.338 5.338 13 C 0.081 3.919 14 C -0.142 4.142 15 C -0.147 4.147 16 C -0.161 4.161 17 C 0.046 3.954 18 H 0.067 0.933 19 N -0.335 5.335 20 C -0.353 4.353 21 H 0.103 0.897 22 C -0.262 4.262 23 N -0.602 5.602 24 Si 0.808 3.192 25 H -0.188 1.188 26 H -0.220 1.220 27 H -0.224 1.224 28 C 0.038 3.962 29 C -0.167 4.167 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.116 0.884 33 H 0.136 0.864 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.118 0.882 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.242 0.758 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.054 0.946 48 H 0.093 0.907 49 H -0.009 1.009 50 H 0.091 0.909 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.342 18.849 13.269 23.169 hybrid contribution 0.573 -0.327 -1.157 1.332 sum -1.768 18.521 12.112 22.201 Atomic orbital electron populations 1.20688 0.80462 1.05880 1.05741 1.24215 0.96193 0.82832 0.98052 1.84307 1.17995 1.35749 1.69773 1.27031 0.84865 0.89959 0.98798 1.20077 0.88142 0.94282 0.99329 1.21883 1.04407 0.99153 0.94669 1.21899 1.04467 0.99337 0.94736 1.70735 1.21796 1.10369 1.18580 1.21507 0.89748 0.95499 1.15671 1.16854 0.85412 0.82933 0.76022 1.90726 1.16487 1.83579 1.51936 1.45698 1.09989 1.05035 1.73036 1.21617 0.94882 0.79316 0.96088 1.22438 0.98592 0.98690 0.94519 1.22506 0.98798 0.96522 0.96855 1.22759 0.99778 0.97276 0.96317 1.22040 0.94416 0.93131 0.85799 0.93347 1.44732 1.37236 1.47874 1.03683 1.19462 1.08588 1.14639 0.92641 0.89677 1.25619 1.01502 1.02612 0.96506 1.70071 1.38927 1.47626 1.03600 0.84990 0.78134 0.78053 0.78054 1.18784 1.22043 1.22401 1.21620 0.87547 0.93559 0.93489 1.23146 0.97352 1.00259 0.95973 0.87383 0.87641 0.88403 0.86440 0.92646 0.88263 0.91709 0.88156 0.93343 0.91643 0.75812 0.91550 0.91084 0.89817 0.90375 0.92721 0.91477 0.94603 0.90744 1.00901 0.90857 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.38 9.88 71.24 0.70 -0.68 16 2 C 0.04 1.15 7.44 25.19 0.19 1.34 16 3 O -0.19 -4.56 10.73 0.43 0.00 -4.55 16 4 C 0.20 4.91 6.81 88.39 0.60 5.52 16 5 C 0.00 0.01 3.39 -11.54 -0.04 -0.02 16 6 C -0.14 -1.54 9.18 71.98 0.66 -0.88 16 7 C -0.15 -1.83 9.17 71.98 0.66 -1.17 16 8 N -0.49 -14.88 11.06 -293.04 -3.24 -18.12 16 9 C -0.11 -3.37 6.99 40.41 0.28 -3.09 16 10 C 0.60 21.37 7.00 86.66 0.61 21.98 16 11 O -0.55 -20.32 12.61 -4.07 -0.05 -20.37 16 12 N -0.69 -25.11 5.22 -419.01 -2.19 -27.30 16 13 C 0.17 6.31 0.74 5.18 0.00 6.32 16 14 C -0.10 -3.27 5.41 31.63 0.17 -3.10 16 15 C -0.11 -3.02 6.87 32.04 0.22 -2.80 16 16 C -0.12 -4.32 6.22 31.80 0.20 -4.12 16 17 C 0.15 6.33 3.67 46.24 0.17 6.50 16 18 H 0.05 2.00 7.96 -2.39 -0.02 1.98 16 19 N -0.61 -31.66 3.03 -663.72 -2.01 -33.67 16 20 C -0.22 -12.51 10.01 84.03 0.84 -11.67 16 21 H 0.09 4.51 7.83 -2.91 -0.02 4.49 16 22 C -0.07 -4.04 5.49 84.86 0.47 -3.58 16 23 N -0.95 -58.26 10.07 21.65 0.22 -58.04 16 24 Si 0.98 46.31 29.55 68.60 2.03 48.33 16 25 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 26 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 27 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 28 C 0.16 8.64 5.90 86.85 0.51 9.16 16 29 C -0.13 -5.55 5.71 31.88 0.18 -5.36 16 30 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.10 2.29 6.48 -2.39 -0.02 2.28 16 33 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.41 14.77 8.21 -92.71 -0.76 14.01 16 41 H 0.07 2.04 7.58 -2.39 -0.02 2.02 16 42 H 0.07 2.27 7.37 -2.39 -0.02 2.25 16 43 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 44 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.05 2.18 8.09 -2.38 -0.02 2.16 16 46 H 0.07 2.26 8.14 -2.39 -0.02 2.25 16 47 H 0.24 14.56 8.31 -92.71 -0.77 13.79 16 48 H 0.07 4.46 5.82 -2.39 -0.01 4.45 16 49 H -0.03 -1.58 8.14 -2.38 -0.02 -1.60 16 50 H 0.07 3.09 7.63 -2.39 -0.02 3.07 16 51 H 0.06 2.80 6.53 -2.38 -0.02 2.79 16 Total: -1.00 -71.51 401.12 1.37 -70.14 By element: Atomic # 1 Polarization: 29.07 SS G_CDS: 0.18 Total: 29.25 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 6.43 Total: 14.34 kcal Atomic # 7 Polarization: -129.92 SS G_CDS: -7.22 Total: -137.13 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.05 Total: -24.92 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -71.51 1.37 -70.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990692618.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.949 kcal (2) G-P(sol) polarization free energy of solvation -71.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds