Wall clock time and date at job start Wed Apr 1 2020 04:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30174 * 126.79927 * 2 1 4 4 O 1.20929 * 111.60140 * 180.02562 * 3 2 1 5 5 C 1.34038 * 111.56760 * 359.76098 * 4 3 2 6 6 C 1.50700 * 126.77763 * 180.29180 * 5 4 3 7 7 C 1.35452 * 106.44457 * 0.37941 * 5 4 3 8 8 C 1.50701 * 128.00172 * 179.91316 * 7 5 4 9 9 H 1.08999 * 109.47729 * 4.15324 * 8 7 5 10 10 C 1.53000 * 109.47113 * 244.14722 * 8 7 5 11 11 C 1.50707 * 109.47027 * 124.15178 * 8 7 5 12 12 O 1.21280 * 119.99848 * 359.97438 * 11 8 7 13 13 N 1.34773 * 120.00083 * 179.97438 * 11 8 7 14 14 C 1.46498 * 120.00120 * 180.02562 * 13 11 8 15 15 C 1.55236 * 113.17025 * 60.04449 * 14 13 11 16 16 C 1.54218 * 106.81966 * 120.10201 * 15 14 13 17 17 C 1.54748 * 104.15893 * 25.64518 * 16 15 14 18 18 C 1.54776 * 103.21508 * 322.19133 * 17 16 15 19 19 H 1.09003 * 111.86501 * 274.14388 * 18 17 16 20 20 N 1.46981 * 108.69279 * 150.19797 * 18 17 16 21 21 C 1.36929 * 125.57966 * 64.89260 * 20 18 17 22 22 H 1.07999 * 120.00719 * 343.38716 * 21 20 18 23 23 C 1.38821 * 119.99832 * 163.37926 * 21 20 18 24 24 N 1.31619 * 119.99956 * 332.22758 * 23 21 20 25 25 Si 1.86796 * 119.99971 * 152.22960 * 23 21 20 26 26 H 1.48502 * 109.47288 * 59.99720 * 25 23 21 27 27 H 1.48504 * 109.47064 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47336 * 299.99812 * 25 23 21 29 29 C 1.47371 * 108.83741 * 245.16587 * 20 18 17 30 30 C 1.54607 * 104.95346 * 24.32687 * 29 20 18 31 31 H 1.09003 * 109.47138 * 275.62032 * 1 2 3 32 32 H 1.08995 * 109.47341 * 35.62426 * 1 2 3 33 33 H 1.09002 * 109.46609 * 155.62601 * 1 2 3 34 34 H 1.09005 * 109.46696 * 273.55376 * 6 5 4 35 35 H 1.09004 * 109.47147 * 33.54488 * 6 5 4 36 36 H 1.08996 * 109.47585 * 153.55209 * 6 5 4 37 37 H 1.08999 * 109.47120 * 301.26434 * 10 8 7 38 38 H 1.09001 * 109.46679 * 61.26079 * 10 8 7 39 39 H 1.08999 * 109.47111 * 181.25905 * 10 8 7 40 40 H 0.97003 * 119.99676 * 0.02562 * 13 11 8 41 41 H 1.09003 * 109.36611 * 1.06527 * 15 14 13 42 42 H 1.09007 * 110.56345 * 239.79571 * 15 14 13 43 43 H 1.09002 * 110.49003 * 266.97317 * 16 15 14 44 44 H 1.09004 * 110.60682 * 144.37628 * 16 15 14 45 45 H 1.09001 * 110.66996 * 203.76149 * 17 16 15 46 46 H 1.09002 * 110.67345 * 80.62107 * 17 16 15 47 47 H 0.97002 * 120.00028 * 354.22701 * 24 23 21 48 48 H 1.09001 * 110.36745 * 143.27294 * 29 20 18 49 49 H 1.08998 * 110.36778 * 265.59146 * 29 20 18 50 50 H 1.08996 * 111.08663 * 205.03229 * 30 29 20 51 51 H 1.08997 * 110.78382 * 81.34928 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4538 0.7253 -0.0005 5 6 3.6025 -0.6068 0.0043 6 6 4.9022 -1.3695 0.0114 7 6 2.3539 -1.1320 -0.0005 8 6 1.9592 -2.5864 0.0000 9 1 2.8527 -3.2055 0.0795 10 6 1.2244 -2.9159 -1.3009 11 6 1.0524 -2.8603 1.1722 12 8 0.7564 -1.9630 1.9325 13 7 0.5705 -4.1024 1.3756 14 6 -0.3113 -4.3685 2.5148 15 6 -1.6165 -3.5286 2.4861 16 6 -2.7899 -4.5286 2.4453 17 6 -2.2187 -5.8093 3.0997 18 6 -0.7611 -5.8518 2.5809 19 1 -0.6898 -6.3422 1.6101 20 7 0.0788 -6.5130 3.5897 21 6 -0.0249 -7.8217 3.9791 22 1 -0.9177 -8.3844 3.7495 23 6 1.0176 -8.4253 4.6689 24 7 2.2528 -8.0057 4.4938 25 14 0.6675 -9.8331 5.8458 26 1 0.0326 -10.9521 5.1041 27 1 1.9404 -10.3003 6.4513 28 1 -0.2489 -9.3664 6.9171 29 6 1.0466 -5.5353 4.1182 30 6 0.3907 -4.1557 3.8793 31 1 -0.3633 0.1006 1.0227 32 1 -0.3634 0.8353 -0.5985 33 1 -0.3632 -0.9361 -0.4241 34 1 5.2514 -1.5017 -1.0127 35 1 5.6470 -0.8129 0.5802 36 1 4.7483 -2.3455 0.4717 37 1 0.3429 -2.2811 -1.3911 38 1 1.8878 -2.7390 -2.1476 39 1 0.9193 -3.9622 -1.2908 40 1 0.8076 -4.8201 0.7677 41 1 -1.6259 -2.9056 1.5917 42 1 -1.6894 -2.9039 3.3764 43 1 -3.0871 -4.7262 1.4154 44 1 -3.6358 -4.1511 3.0198 45 1 -2.7705 -6.6892 2.7690 46 1 -2.2380 -5.7276 4.1864 47 1 2.4458 -7.3329 3.8222 48 1 1.2085 -5.6996 5.1835 49 1 1.9894 -5.6032 3.5755 50 1 1.1432 -3.3701 3.8124 51 1 -0.3355 -3.9322 4.6608 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992318356.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:49 Heat of formation + Delta-G solvation = 38.108348 kcal Electronic energy + Delta-G solvation = -32716.838497 eV Core-core repulsion = 28619.644219 eV Total energy + Delta-G solvation = -4097.194278 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.94395 -40.40000 -38.56457 -35.68273 -34.52455 -33.95864 -33.53373 -32.10514 -31.37278 -29.72593 -28.75709 -27.74402 -26.58533 -26.32361 -24.88323 -23.82753 -22.51974 -20.88573 -20.21949 -20.16768 -19.44937 -18.96158 -17.74008 -17.50826 -17.22144 -16.49884 -16.01385 -15.34279 -14.90470 -14.78818 -14.17629 -14.04515 -13.77801 -13.65643 -13.57275 -13.50627 -13.31272 -13.11796 -13.06069 -12.86682 -12.66018 -12.56780 -12.42440 -12.08821 -11.85886 -11.78138 -11.68826 -11.53755 -10.97463 -10.86576 -10.70444 -10.63771 -10.44269 -10.33097 -10.20052 -10.01106 -9.95342 -9.84101 -9.53779 -9.52134 -9.15367 -8.70902 -8.42086 -6.97871 -6.11952 -3.17043 1.39449 2.18013 2.75607 3.02722 3.31631 3.47547 3.52466 3.69526 4.12644 4.37076 4.46510 4.55745 4.64117 4.72044 4.86592 4.99712 5.00638 5.04139 5.17103 5.17697 5.21033 5.31882 5.35059 5.43545 5.53635 5.55077 5.58960 5.62720 5.66418 5.71144 5.74186 5.79849 5.82047 5.89478 5.98146 6.00555 6.12584 6.15720 6.19635 6.28837 6.33002 6.41854 6.54851 6.65554 6.83196 6.93228 7.06446 7.07027 7.70200 7.78184 8.27663 8.39290 8.46323 8.99094 9.79128 10.34121 11.20409 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015501 B = 0.003186 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.900522 B = 8785.993377 C = 9861.958147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.056 3.944 3 N -0.375 5.375 4 O 0.092 5.908 5 C -0.029 4.029 6 C -0.075 4.075 7 C -0.178 4.178 8 C -0.034 4.034 9 H 0.107 0.893 10 C -0.143 4.143 11 C 0.518 3.482 12 O -0.525 6.525 13 N -0.703 5.703 14 C 0.162 3.838 15 C -0.107 4.107 16 C -0.125 4.125 17 C -0.126 4.126 18 C 0.161 3.839 19 H 0.045 0.955 20 N -0.594 5.594 21 C -0.335 4.335 22 H 0.065 0.935 23 C -0.024 4.024 24 N -0.916 5.916 25 Si 1.062 2.938 26 H -0.294 1.294 27 H -0.286 1.286 28 H -0.294 1.294 29 C 0.146 3.854 30 C -0.132 4.132 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.400 0.600 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.073 0.927 47 H 0.268 0.732 48 H 0.050 0.950 49 H 0.023 0.977 50 H 0.070 0.930 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.045 11.758 -12.629 17.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.103 4.103 3 N -0.083 5.083 4 O 0.030 5.970 5 C -0.092 4.092 6 C -0.132 4.132 7 C -0.182 4.182 8 C -0.056 4.056 9 H 0.125 0.875 10 C -0.200 4.200 11 C 0.303 3.697 12 O -0.401 6.401 13 N -0.353 5.353 14 C 0.076 3.924 15 C -0.146 4.146 16 C -0.163 4.163 17 C -0.166 4.166 18 C 0.054 3.946 19 H 0.063 0.937 20 N -0.320 5.320 21 C -0.462 4.462 22 H 0.082 0.918 23 C -0.226 4.226 24 N -0.557 5.557 25 Si 0.892 3.108 26 H -0.221 1.221 27 H -0.212 1.212 28 H -0.221 1.221 29 C 0.021 3.979 30 C -0.172 4.172 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.235 0.765 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.091 0.909 47 H 0.079 0.921 48 H 0.068 0.932 49 H 0.040 0.960 50 H 0.088 0.912 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.752 12.570 -10.927 16.672 hybrid contribution -0.615 -0.219 -1.372 1.519 sum -1.367 12.351 -12.298 17.484 Atomic orbital electron populations 1.20197 0.86201 1.02545 1.03849 1.23230 0.98756 0.87952 1.00393 1.73801 0.89199 1.23888 1.21412 1.84783 1.21782 1.22162 1.68320 1.24164 0.97929 0.84108 1.03044 1.20359 0.90169 0.98762 1.03952 1.20258 0.91765 0.95876 1.10352 1.19567 0.99593 0.91203 0.95218 0.87479 1.21831 1.00801 1.02308 0.95103 1.20253 0.80762 0.82725 0.85989 1.90694 1.58588 1.44210 1.46613 1.45836 1.49719 1.10302 1.29477 1.21830 0.89206 0.95510 0.85862 1.22500 0.93010 0.97092 1.02025 1.22356 0.97256 0.96412 1.00271 1.22868 0.96856 0.95935 1.00990 1.21794 0.91220 0.88752 0.92872 0.93697 1.44552 1.38564 1.07232 1.41613 1.19691 1.02058 0.86784 1.37685 0.91765 1.25698 0.92012 1.02619 1.02238 1.70791 1.18417 1.30886 1.35591 0.83562 0.75336 0.75266 0.76649 1.22072 1.21151 1.22135 1.21485 0.92055 0.86231 0.98166 1.23075 1.00269 0.98740 0.95085 0.89381 0.91349 0.90652 0.89436 0.89688 0.89043 0.91637 0.91273 0.91180 0.76543 0.92306 0.91200 0.92307 0.92159 0.92265 0.90873 0.92058 0.93176 0.95972 0.91186 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 9.00 36.01 0.32 -0.51 16 2 C 0.06 0.77 6.70 -82.10 -0.55 0.22 16 3 N -0.38 -5.55 12.07 33.42 0.40 -5.15 16 4 O 0.09 1.23 11.20 17.18 0.19 1.43 16 5 C -0.03 -0.33 7.49 -35.30 -0.26 -0.59 16 6 C -0.08 -0.55 10.25 36.01 0.37 -0.18 16 7 C -0.18 -2.20 4.55 -104.42 -0.47 -2.67 16 8 C -0.03 -0.36 2.98 -92.92 -0.28 -0.64 16 9 H 0.11 0.99 7.02 -51.93 -0.36 0.62 16 10 C -0.14 -1.20 9.05 37.16 0.34 -0.86 16 11 C 0.52 7.16 6.00 -10.98 -0.07 7.10 16 12 O -0.53 -8.80 11.86 5.56 0.07 -8.74 16 13 N -0.70 -9.94 5.16 -44.55 -0.23 -10.17 16 14 C 0.16 2.69 0.78 -128.49 -0.10 2.59 16 15 C -0.11 -1.61 5.34 -24.91 -0.13 -1.74 16 16 C -0.12 -1.75 6.83 -25.17 -0.17 -1.92 16 17 C -0.13 -2.19 6.22 -24.88 -0.15 -2.35 16 18 C 0.16 3.08 3.61 -65.60 -0.24 2.84 16 19 H 0.05 0.87 7.97 -51.93 -0.41 0.45 16 20 N -0.59 -14.09 2.94 -161.29 -0.47 -14.56 16 21 C -0.33 -8.98 9.73 -15.06 -0.15 -9.12 16 22 H 0.06 1.72 7.97 -52.49 -0.42 1.31 16 23 C -0.02 -0.66 5.08 -17.43 -0.09 -0.75 16 24 N -0.92 -26.87 12.92 55.49 0.72 -26.15 16 25 Si 1.06 24.84 30.00 -169.99 -5.10 19.74 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 28 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 29 C 0.15 3.34 5.27 -2.72 -0.01 3.32 16 30 C -0.13 -2.52 5.80 -24.87 -0.14 -2.66 16 31 H 0.09 1.16 7.70 -51.93 -0.40 0.76 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.81 5.71 -51.93 -0.30 0.51 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.63 7.20 -51.93 -0.37 0.26 16 37 H 0.06 0.57 5.89 -51.93 -0.31 0.27 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.51 7.53 -51.93 -0.39 0.12 16 40 H 0.40 5.07 7.89 -40.82 -0.32 4.74 16 41 H 0.06 0.85 7.47 -51.93 -0.39 0.46 16 42 H 0.07 1.09 7.41 -51.93 -0.38 0.71 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.07 1.40 8.09 -51.93 -0.42 0.98 16 47 H 0.27 7.85 6.03 -40.82 -0.25 7.60 16 48 H 0.05 1.28 7.91 -51.93 -0.41 0.87 16 49 H 0.02 0.54 6.83 -51.93 -0.35 0.19 16 50 H 0.07 1.35 6.84 -51.93 -0.36 1.00 16 51 H 0.07 1.35 7.60 -51.93 -0.39 0.96 16 LS Contribution 392.19 15.07 5.91 5.91 Total: -1.00 -32.61 392.19 -8.30 -40.91 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -7.99 Total: 4.72 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -1.79 Total: -7.94 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.42 Total: -56.03 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: 0.26 Total: -7.31 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.10 Total: 19.74 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.61 -8.30 -40.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992318356.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.017 kcal (2) G-P(sol) polarization free energy of solvation -32.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds