Wall clock time and date at job start Wed Apr 1 2020 04:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30174 * 126.79927 * 2 1 4 4 O 1.20929 * 111.60140 * 180.02562 * 3 2 1 5 5 C 1.34038 * 111.56760 * 359.76098 * 4 3 2 6 6 C 1.50700 * 126.77763 * 180.29180 * 5 4 3 7 7 C 1.35452 * 106.44457 * 0.37941 * 5 4 3 8 8 C 1.50701 * 128.00172 * 179.91316 * 7 5 4 9 9 H 1.08999 * 109.47729 * 4.15324 * 8 7 5 10 10 C 1.53000 * 109.47113 * 244.14722 * 8 7 5 11 11 C 1.50707 * 109.47027 * 124.15178 * 8 7 5 12 12 O 1.21280 * 119.99848 * 359.97438 * 11 8 7 13 13 N 1.34773 * 120.00083 * 179.97438 * 11 8 7 14 14 C 1.46498 * 120.00120 * 180.02562 * 13 11 8 15 15 C 1.55236 * 113.17025 * 60.04449 * 14 13 11 16 16 C 1.54218 * 106.81966 * 120.10201 * 15 14 13 17 17 C 1.54748 * 104.15893 * 25.64518 * 16 15 14 18 18 C 1.54776 * 103.21508 * 322.19133 * 17 16 15 19 19 H 1.09003 * 111.86501 * 274.14388 * 18 17 16 20 20 N 1.46981 * 108.69279 * 150.19797 * 18 17 16 21 21 C 1.36929 * 125.57966 * 64.89260 * 20 18 17 22 22 H 1.07999 * 120.00719 * 343.38716 * 21 20 18 23 23 C 1.38821 * 119.99832 * 163.37926 * 21 20 18 24 24 N 1.31619 * 119.99956 * 332.22758 * 23 21 20 25 25 Si 1.86796 * 119.99971 * 152.22960 * 23 21 20 26 26 H 1.48502 * 109.47288 * 59.99720 * 25 23 21 27 27 H 1.48504 * 109.47064 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47336 * 299.99812 * 25 23 21 29 29 C 1.47371 * 108.83741 * 245.16587 * 20 18 17 30 30 C 1.54607 * 104.95346 * 24.32687 * 29 20 18 31 31 H 1.09003 * 109.47138 * 275.62032 * 1 2 3 32 32 H 1.08995 * 109.47341 * 35.62426 * 1 2 3 33 33 H 1.09002 * 109.46609 * 155.62601 * 1 2 3 34 34 H 1.09005 * 109.46696 * 273.55376 * 6 5 4 35 35 H 1.09004 * 109.47147 * 33.54488 * 6 5 4 36 36 H 1.08996 * 109.47585 * 153.55209 * 6 5 4 37 37 H 1.08999 * 109.47120 * 301.26434 * 10 8 7 38 38 H 1.09001 * 109.46679 * 61.26079 * 10 8 7 39 39 H 1.08999 * 109.47111 * 181.25905 * 10 8 7 40 40 H 0.97003 * 119.99676 * 0.02562 * 13 11 8 41 41 H 1.09003 * 109.36611 * 1.06527 * 15 14 13 42 42 H 1.09007 * 110.56345 * 239.79571 * 15 14 13 43 43 H 1.09002 * 110.49003 * 266.97317 * 16 15 14 44 44 H 1.09004 * 110.60682 * 144.37628 * 16 15 14 45 45 H 1.09001 * 110.66996 * 203.76149 * 17 16 15 46 46 H 1.09002 * 110.67345 * 80.62107 * 17 16 15 47 47 H 0.97002 * 120.00028 * 354.22701 * 24 23 21 48 48 H 1.09001 * 110.36745 * 143.27294 * 29 20 18 49 49 H 1.08998 * 110.36778 * 265.59146 * 29 20 18 50 50 H 1.08996 * 111.08663 * 205.03229 * 30 29 20 51 51 H 1.08997 * 110.78382 * 81.34928 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4538 0.7253 -0.0005 5 6 3.6025 -0.6068 0.0043 6 6 4.9022 -1.3695 0.0114 7 6 2.3539 -1.1320 -0.0005 8 6 1.9592 -2.5864 0.0000 9 1 2.8527 -3.2055 0.0795 10 6 1.2244 -2.9159 -1.3009 11 6 1.0524 -2.8603 1.1722 12 8 0.7564 -1.9630 1.9325 13 7 0.5705 -4.1024 1.3756 14 6 -0.3113 -4.3685 2.5148 15 6 -1.6165 -3.5286 2.4861 16 6 -2.7899 -4.5286 2.4453 17 6 -2.2187 -5.8093 3.0997 18 6 -0.7611 -5.8518 2.5809 19 1 -0.6898 -6.3422 1.6101 20 7 0.0788 -6.5130 3.5897 21 6 -0.0249 -7.8217 3.9791 22 1 -0.9177 -8.3844 3.7495 23 6 1.0176 -8.4253 4.6689 24 7 2.2528 -8.0057 4.4938 25 14 0.6675 -9.8331 5.8458 26 1 0.0326 -10.9521 5.1041 27 1 1.9404 -10.3003 6.4513 28 1 -0.2489 -9.3664 6.9171 29 6 1.0466 -5.5353 4.1182 30 6 0.3907 -4.1557 3.8793 31 1 -0.3633 0.1006 1.0227 32 1 -0.3634 0.8353 -0.5985 33 1 -0.3632 -0.9361 -0.4241 34 1 5.2514 -1.5017 -1.0127 35 1 5.6470 -0.8129 0.5802 36 1 4.7483 -2.3455 0.4717 37 1 0.3429 -2.2811 -1.3911 38 1 1.8878 -2.7390 -2.1476 39 1 0.9193 -3.9622 -1.2908 40 1 0.8076 -4.8201 0.7677 41 1 -1.6259 -2.9056 1.5917 42 1 -1.6894 -2.9039 3.3764 43 1 -3.0871 -4.7262 1.4154 44 1 -3.6358 -4.1511 3.0198 45 1 -2.7705 -6.6892 2.7690 46 1 -2.2380 -5.7276 4.1864 47 1 2.4458 -7.3329 3.8222 48 1 1.2085 -5.6996 5.1835 49 1 1.9894 -5.6032 3.5755 50 1 1.1432 -3.3701 3.8124 51 1 -0.3355 -3.9322 4.6608 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992318356.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:48 Heat of formation + Delta-G solvation = 18.620826 kcal Electronic energy + Delta-G solvation = -32717.683539 eV Core-core repulsion = 28619.644219 eV Total energy + Delta-G solvation = -4098.039320 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.91293 -41.69690 -39.88554 -36.70523 -36.20799 -35.01190 -34.58139 -33.51250 -32.70051 -31.30975 -29.70209 -28.49100 -28.20590 -27.71657 -25.75021 -25.70543 -23.62883 -22.29811 -21.64538 -21.16743 -20.76484 -20.24291 -19.40113 -18.74798 -18.33558 -17.48140 -17.31026 -16.72695 -16.20584 -15.89264 -15.60533 -15.33811 -15.25188 -15.03551 -14.90100 -14.59573 -14.36285 -14.20910 -13.96081 -13.86684 -13.70959 -13.58216 -13.33480 -13.24423 -13.22248 -13.06203 -12.83056 -12.62276 -12.44852 -12.40200 -12.23722 -11.97195 -11.88792 -11.86129 -11.75458 -11.63774 -11.49101 -11.32559 -10.83298 -10.65885 -10.46741 -10.07986 -9.96762 -8.96996 -8.26876 -5.28300 0.49423 1.20099 1.58476 1.66168 1.67142 1.84139 2.13411 2.25130 2.65484 3.19311 3.22553 3.28374 3.52467 3.54465 3.58621 3.81436 3.85406 3.87055 4.03456 4.14773 4.23507 4.28583 4.29407 4.37315 4.43745 4.47712 4.56397 4.59345 4.67403 4.70065 4.73745 4.74445 4.79639 4.83038 4.85934 4.90595 4.95582 4.97382 5.04374 5.09290 5.12092 5.16971 5.20403 5.25623 5.30103 5.35903 5.51548 5.66879 5.75924 6.35632 6.59103 6.93848 7.28702 7.33040 7.74365 8.33795 9.05232 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015501 B = 0.003186 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.900522 B = 8785.993377 C = 9861.958147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.043 3.957 3 N -0.406 5.406 4 O 0.080 5.920 5 C -0.023 4.023 6 C -0.076 4.076 7 C -0.195 4.195 8 C -0.025 4.025 9 H 0.126 0.874 10 C -0.140 4.140 11 C 0.518 3.482 12 O -0.555 6.555 13 N -0.700 5.700 14 C 0.175 3.825 15 C -0.100 4.100 16 C -0.110 4.110 17 C -0.123 4.123 18 C 0.154 3.846 19 H 0.050 0.950 20 N -0.611 5.611 21 C -0.334 4.334 22 H 0.063 0.937 23 C -0.078 4.078 24 N -0.947 5.947 25 Si 1.109 2.891 26 H -0.273 1.273 27 H -0.295 1.295 28 H -0.286 1.286 29 C 0.157 3.843 30 C -0.120 4.120 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.409 0.591 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.061 0.939 46 H 0.049 0.951 47 H 0.256 0.744 48 H 0.011 0.989 49 H 0.004 0.996 50 H 0.066 0.934 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.029 11.549 -14.438 18.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.116 4.116 3 N -0.116 5.116 4 O 0.020 5.980 5 C -0.087 4.087 6 C -0.133 4.133 7 C -0.200 4.200 8 C -0.047 4.047 9 H 0.144 0.856 10 C -0.197 4.197 11 C 0.305 3.695 12 O -0.433 6.433 13 N -0.351 5.351 14 C 0.087 3.913 15 C -0.139 4.139 16 C -0.148 4.148 17 C -0.163 4.163 18 C 0.048 3.952 19 H 0.068 0.932 20 N -0.336 5.336 21 C -0.462 4.462 22 H 0.081 0.919 23 C -0.274 4.274 24 N -0.590 5.590 25 Si 0.935 3.065 26 H -0.198 1.198 27 H -0.222 1.222 28 H -0.212 1.212 29 C 0.031 3.969 30 C -0.159 4.159 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.132 0.868 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.245 0.755 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.030 0.970 49 H 0.022 0.978 50 H 0.085 0.915 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.758 12.369 -12.777 17.870 hybrid contribution -0.283 -0.125 -0.810 0.867 sum -2.041 12.244 -13.587 18.404 Atomic orbital electron populations 1.20197 0.85398 1.03706 1.03085 1.23623 0.99585 0.88377 1.00033 1.73784 0.89836 1.24928 1.23031 1.84739 1.21373 1.23350 1.68564 1.24890 0.99327 0.83414 1.01051 1.20591 0.88419 0.98406 1.05860 1.20488 0.91924 0.96321 1.11245 1.19595 0.99730 0.90585 0.94799 0.85643 1.21853 1.00727 1.02987 0.94104 1.20797 0.80439 0.81879 0.86371 1.90691 1.59646 1.45024 1.47895 1.45770 1.49559 1.10971 1.28796 1.21615 0.90094 0.94240 0.85323 1.22435 0.92152 0.97025 1.02302 1.22295 0.97106 0.93859 1.01519 1.22744 0.95755 0.98068 0.99761 1.22037 0.91539 0.89766 0.91896 0.93210 1.44712 1.39097 1.06644 1.43139 1.19926 1.01471 0.87989 1.36844 0.91895 1.26939 0.91737 1.04937 1.03785 1.70896 1.19526 1.32066 1.36530 0.82915 0.74930 0.73501 0.75181 1.19848 1.22161 1.21225 1.21257 0.91806 0.88387 0.95421 1.22926 1.00007 0.95985 0.97012 0.91001 0.90236 0.89438 0.86822 0.88715 0.88409 0.91983 0.89665 0.89874 0.75497 0.91099 0.91896 0.90044 0.90327 0.92033 0.93178 0.93403 0.97049 0.97816 0.91492 0.91183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.52 9.00 71.24 0.64 -0.88 16 2 C 0.04 1.14 6.70 43.58 0.29 1.43 16 3 N -0.41 -11.95 12.07 -49.55 -0.60 -12.55 16 4 O 0.08 2.11 11.20 71.64 0.80 2.92 16 5 C -0.02 -0.49 7.49 25.04 0.19 -0.31 16 6 C -0.08 -0.92 10.25 71.24 0.73 -0.19 16 7 C -0.20 -4.53 4.55 -19.74 -0.09 -4.62 16 8 C -0.03 -0.49 2.98 -12.28 -0.04 -0.52 16 9 H 0.13 1.96 7.02 -2.39 -0.02 1.94 16 10 C -0.14 -1.91 9.05 71.98 0.65 -1.26 16 11 C 0.52 13.50 6.00 87.66 0.53 14.03 16 12 O -0.56 -18.09 11.86 -3.03 -0.04 -18.12 16 13 N -0.70 -18.60 5.16 -413.25 -2.13 -20.74 16 14 C 0.17 5.58 0.78 5.76 0.00 5.58 16 15 C -0.10 -2.77 5.34 31.77 0.17 -2.60 16 16 C -0.11 -2.73 6.83 31.60 0.22 -2.52 16 17 C -0.12 -4.09 6.22 31.80 0.20 -3.89 16 18 C 0.15 5.72 3.61 46.24 0.17 5.88 16 19 H 0.05 1.83 7.97 -2.39 -0.02 1.81 16 20 N -0.61 -29.29 2.94 -664.21 -1.95 -31.24 16 21 C -0.33 -18.07 9.73 84.04 0.82 -17.25 16 22 H 0.06 3.37 7.97 -2.91 -0.02 3.34 16 23 C -0.08 -4.37 5.08 84.86 0.43 -3.94 16 24 N -0.95 -57.11 12.92 21.65 0.28 -56.83 16 25 Si 1.11 50.54 30.00 68.60 2.06 52.60 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 27 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 28 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 29 C 0.16 7.43 5.27 86.76 0.46 7.89 16 30 C -0.12 -4.61 5.80 31.80 0.18 -4.42 16 31 H 0.07 1.88 7.70 -2.39 -0.02 1.86 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.09 1.72 5.71 -2.39 -0.01 1.71 16 34 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.10 1.10 7.20 -2.39 -0.02 1.08 16 37 H 0.06 0.91 5.89 -2.39 -0.01 0.89 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.08 0.93 7.53 -2.39 -0.02 0.91 16 40 H 0.41 9.50 7.89 -92.71 -0.73 8.77 16 41 H 0.07 1.83 7.47 -2.39 -0.02 1.81 16 42 H 0.06 1.85 7.41 -2.38 -0.02 1.83 16 43 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 46 H 0.05 1.89 8.09 -2.39 -0.02 1.87 16 47 H 0.26 15.54 6.03 -92.71 -0.56 14.98 16 48 H 0.01 0.60 7.91 -2.39 -0.02 0.58 16 49 H 0.00 0.21 6.83 -2.39 -0.02 0.19 16 50 H 0.07 2.62 6.84 -2.39 -0.02 2.60 16 51 H 0.07 2.69 7.60 -2.39 -0.02 2.67 16 Total: -1.00 -73.04 392.19 4.40 -68.64 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.43 Total: 22.90 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: 5.55 Total: -7.58 kcal Atomic # 7 Polarization: -116.96 SS G_CDS: -4.40 Total: -121.36 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.77 Total: -15.21 kcal Atomic # 14 Polarization: 50.54 SS G_CDS: 2.06 Total: 52.60 kcal Total: -73.04 4.40 -68.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992318356.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.262 kcal (2) G-P(sol) polarization free energy of solvation -73.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds