Wall clock time and date at job start Wed Apr 1 2020 04:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30174 * 126.80159 * 2 1 4 4 O 1.20914 * 111.60281 * 180.02562 * 3 2 1 5 5 C 1.34035 * 111.57138 * 0.02562 * 4 3 2 6 6 C 1.50706 * 126.78088 * 179.97438 * 5 4 3 7 7 C 1.35447 * 106.44562 * 0.24016 * 5 4 3 8 8 C 1.50704 * 128.01100 * 179.73661 * 7 5 4 9 9 C 1.50701 * 109.46932 * 89.99662 * 8 7 5 10 10 O 1.21282 * 120.00094 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99545 * 180.02562 * 9 8 7 12 12 C 1.47067 * 125.44897 * 0.02931 * 11 9 8 13 13 C 1.55056 * 105.86122 * 199.58891 * 12 11 9 14 14 H 1.08994 * 111.62384 * 208.18337 * 13 12 11 15 15 C 1.52906 * 107.37987 * 85.78733 * 13 12 11 16 16 C 1.52856 * 109.62994 * 193.25003 * 15 13 12 17 17 C 1.52656 * 108.65334 * 64.95074 * 16 15 13 18 18 C 1.51500 * 110.88706 * 300.18727 * 17 16 15 19 19 H 1.09000 * 108.29793 * 285.50703 * 18 17 16 20 20 N 1.46495 * 108.30301 * 168.37574 * 18 17 16 21 21 C 1.36943 * 119.99983 * 84.99668 * 20 18 17 22 22 H 1.07998 * 119.99463 * 0.02562 * 21 20 18 23 23 C 1.38810 * 120.00353 * 179.97438 * 21 20 18 24 24 N 1.31621 * 119.99766 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00189 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47171 * 90.00314 * 25 23 21 27 27 H 1.48502 * 109.46961 * 210.00236 * 25 23 21 28 28 H 1.48498 * 109.47100 * 329.99986 * 25 23 21 29 29 C 1.49683 * 115.37006 * 47.03365 * 18 17 16 30 30 H 1.08998 * 107.66927 * 200.47070 * 29 18 17 31 31 C 1.47138 * 125.43903 * 179.72506 * 11 9 8 32 32 H 1.09004 * 109.46902 * 89.98018 * 1 2 3 33 33 H 1.09004 * 109.46883 * 209.97004 * 1 2 3 34 34 H 1.08986 * 109.47446 * 329.97447 * 1 2 3 35 35 H 1.09001 * 109.46953 * 0.02562 * 6 5 4 36 36 H 1.09000 * 109.47318 * 120.02019 * 6 5 4 37 37 H 1.09000 * 109.47161 * 240.02649 * 6 5 4 38 38 H 1.08999 * 109.47336 * 210.00345 * 8 7 5 39 39 H 1.09006 * 109.46778 * 330.00359 * 8 7 5 40 40 H 1.09002 * 110.16920 * 318.68558 * 12 11 9 41 41 H 1.08999 * 110.17590 * 80.48842 * 12 11 9 42 42 H 1.08998 * 109.44204 * 313.30384 * 15 13 12 43 43 H 1.09002 * 109.44056 * 73.20488 * 15 13 12 44 44 H 1.09003 * 109.60808 * 184.69580 * 16 15 13 45 45 H 1.08996 * 109.61107 * 305.20237 * 16 15 13 46 46 H 1.09002 * 109.19537 * 60.54446 * 17 16 15 47 47 H 1.08994 * 109.19600 * 179.86958 * 17 16 15 48 48 H 0.97001 * 120.00458 * 265.00002 * 20 18 17 49 49 H 0.97004 * 120.00363 * 179.97438 * 24 23 21 50 50 H 1.09000 * 109.97342 * 299.85853 * 31 11 9 51 51 H 1.08998 * 109.97852 * 61.13980 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6025 -0.6067 -0.0015 6 6 4.9022 -1.3696 -0.0029 7 6 2.3540 -1.1320 -0.0070 8 6 1.9591 -2.5864 -0.0157 9 6 1.8245 -3.0788 1.4022 10 8 2.0286 -2.3231 2.3286 11 7 1.4772 -4.3590 1.6408 12 6 1.2034 -5.3743 0.6126 13 6 0.3837 -6.4839 1.3205 14 1 0.5383 -7.4569 0.8542 15 6 -1.0868 -6.0679 1.2702 16 6 -1.9003 -6.9405 2.2258 17 6 -1.4406 -6.6601 3.6542 18 6 0.0323 -6.9741 3.8191 19 1 0.1501 -8.0573 3.8479 20 7 0.4774 -6.4308 5.1047 21 6 0.3134 -7.1622 6.2508 22 1 -0.1437 -8.1397 6.2067 23 6 0.7356 -6.6477 7.4689 24 7 1.2932 -5.4567 7.5225 25 14 0.5125 -7.6457 9.0321 26 1 1.7129 -8.4911 9.2552 27 1 0.3331 -6.7267 10.1847 28 1 -0.6858 -8.5126 8.8991 29 6 0.9273 -6.4322 2.7486 30 1 1.8524 -7.0083 2.7679 31 6 1.3176 -4.9659 2.9716 32 1 -0.3633 0.0004 -1.0277 33 1 -0.3633 -0.8903 0.5134 34 1 -0.3633 0.8896 0.5142 35 1 5.7357 -0.6671 -0.0025 36 1 4.9560 -1.9975 0.8865 37 1 4.9551 -1.9957 -0.8935 38 1 1.0061 -2.7010 -0.5322 39 1 2.7239 -3.1674 -0.5310 40 1 0.6227 -4.9387 -0.2005 41 1 2.1384 -5.7837 0.2302 42 1 -1.1785 -5.0228 1.5660 43 1 -1.4644 -6.1918 0.2552 44 1 -2.9592 -6.7006 2.1286 45 1 -1.7378 -7.9920 1.9891 46 1 -1.6109 -5.6087 3.8856 47 1 -2.0171 -7.2767 4.3438 48 1 0.8883 -5.5530 5.1442 49 1 1.5879 -5.0969 8.3737 50 1 2.2565 -4.9077 3.5224 51 1 0.5297 -4.4527 3.5229 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992912107.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:49 Heat of formation + Delta-G solvation = 27.293084 kcal Electronic energy + Delta-G solvation = -31775.200583 eV Core-core repulsion = 27677.537320 eV Total energy + Delta-G solvation = -4097.663263 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.97391 -40.56787 -38.68558 -35.63226 -35.27918 -33.97729 -33.75247 -31.71914 -31.13675 -29.89120 -28.82530 -28.68083 -27.34002 -26.67773 -24.51022 -23.55315 -22.11118 -21.54482 -20.89779 -20.33524 -19.23023 -18.40719 -17.82249 -17.26881 -17.02237 -16.67525 -16.05177 -15.39116 -15.12671 -14.76810 -14.46793 -14.25047 -13.87136 -13.66583 -13.62371 -13.57092 -13.38182 -13.25902 -13.03754 -12.93648 -12.74014 -12.70195 -12.44521 -12.40771 -12.16015 -11.97345 -11.82891 -11.37250 -11.04212 -11.02731 -10.97308 -10.86213 -10.80479 -10.29669 -10.15370 -10.05216 -9.89428 -9.73125 -9.67294 -9.54545 -9.18421 -8.87328 -8.47263 -6.96932 -5.75188 -3.05324 1.37940 2.07916 2.70216 2.98538 3.16176 3.43504 3.48466 3.50796 4.07011 4.32888 4.45197 4.48334 4.55869 4.61907 4.72734 4.80304 4.92480 5.07869 5.11393 5.21796 5.23488 5.25046 5.32266 5.32386 5.39180 5.42601 5.49443 5.56055 5.57070 5.61206 5.63147 5.72483 5.73460 5.81211 5.82029 5.94547 6.03312 6.04022 6.12501 6.24279 6.33978 6.38865 6.43272 6.47683 6.59794 6.71642 6.91272 7.14243 7.61989 7.70227 8.22479 8.26748 8.42406 9.53439 10.09711 10.43483 11.46952 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012247 B = 0.002870 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.653248 B = 9752.717490 C =10922.408282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.035 3.965 3 N -0.369 5.369 4 O 0.095 5.905 5 C -0.016 4.016 6 C -0.075 4.075 7 C -0.185 4.185 8 C -0.056 4.056 9 C 0.522 3.478 10 O -0.526 6.526 11 N -0.614 5.614 12 C 0.100 3.900 13 C -0.088 4.088 14 H 0.094 0.906 15 C -0.110 4.110 16 C -0.117 4.117 17 C -0.131 4.131 18 C 0.190 3.810 19 H 0.047 0.953 20 N -0.730 5.730 21 C -0.242 4.242 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.930 5.930 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C -0.088 4.088 30 H 0.069 0.931 31 C 0.120 3.880 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.059 0.941 48 H 0.385 0.615 49 H 0.256 0.744 50 H 0.073 0.927 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.844 2.336 -23.405 23.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.124 4.124 3 N -0.076 5.076 4 O 0.032 5.968 5 C -0.080 4.080 6 C -0.133 4.133 7 C -0.189 4.189 8 C -0.096 4.096 9 C 0.310 3.690 10 O -0.401 6.401 11 N -0.349 5.349 12 C -0.024 4.024 13 C -0.107 4.107 14 H 0.112 0.888 15 C -0.148 4.148 16 C -0.155 4.155 17 C -0.171 4.171 18 C 0.081 3.919 19 H 0.065 0.935 20 N -0.372 5.372 21 C -0.373 4.373 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.578 5.578 25 Si 0.736 3.264 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.108 4.108 30 H 0.088 0.912 31 C -0.002 4.002 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.107 0.893 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.221 0.779 49 H 0.065 0.935 50 H 0.092 0.908 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.770 4.046 -22.735 23.105 hybrid contribution -0.076 -1.073 1.076 1.521 sum 0.694 2.972 -21.660 21.874 Atomic orbital electron populations 1.20160 0.86117 1.04125 1.02947 1.23338 0.98802 0.88356 1.01904 1.73796 0.89234 1.23867 1.20707 1.84779 1.21698 1.22359 1.67990 1.24161 0.98064 0.83870 1.01895 1.20362 0.90096 0.98732 1.04096 1.20220 0.91942 0.95951 1.10793 1.19848 1.04149 0.90311 0.95296 1.20078 0.77483 0.80487 0.90985 1.90780 1.49377 1.54193 1.45784 1.48473 1.68477 1.09293 1.08694 1.22425 0.99274 0.89416 0.91256 1.21965 0.95268 0.97898 0.95609 0.88789 1.21533 0.93895 1.00332 0.98992 1.21434 0.98525 0.99299 0.96233 1.21888 0.98927 1.01873 0.94399 1.19064 0.90585 0.96843 0.85458 0.93488 1.42700 1.72710 1.20621 1.01188 1.19227 1.33328 0.99140 0.85576 0.91212 1.24744 1.01487 0.96889 0.97685 1.69664 1.46221 1.16926 1.25008 0.86230 0.77635 0.78974 0.83565 1.21773 1.21819 1.20810 1.21124 1.00169 0.95392 0.94101 0.91229 1.21830 1.02247 0.92836 0.83287 0.90247 0.90126 0.90401 0.89788 0.88963 0.89262 0.87767 0.87825 0.90875 0.91623 0.91908 0.92439 0.92706 0.92313 0.92528 0.92182 0.77927 0.93452 0.90832 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.39 36.01 0.37 -0.41 16 2 C 0.04 0.47 7.33 -82.10 -0.60 -0.14 16 3 N -0.37 -5.43 12.07 33.42 0.40 -5.02 16 4 O 0.10 1.30 11.20 17.19 0.19 1.49 16 5 C -0.02 -0.19 7.49 -35.30 -0.26 -0.45 16 6 C -0.08 -0.58 10.23 36.01 0.37 -0.21 16 7 C -0.18 -2.24 4.81 -104.42 -0.50 -2.75 16 8 C -0.06 -0.55 5.06 -29.03 -0.15 -0.69 16 9 C 0.52 7.49 7.84 -10.98 -0.09 7.40 16 10 O -0.53 -10.28 16.35 5.56 0.09 -10.18 16 11 N -0.61 -8.24 3.31 -171.21 -0.57 -8.80 16 12 C 0.10 0.93 5.94 -2.65 -0.02 0.92 16 13 C -0.09 -0.94 3.40 -89.63 -0.30 -1.24 16 14 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 15 C -0.11 -1.19 4.89 -26.85 -0.13 -1.32 16 16 C -0.12 -1.45 5.94 -26.98 -0.16 -1.61 16 17 C -0.13 -2.20 5.40 -27.67 -0.15 -2.35 16 18 C 0.19 3.50 2.53 -70.33 -0.18 3.32 16 19 H 0.05 0.89 8.01 -51.93 -0.42 0.47 16 20 N -0.73 -17.60 4.86 -55.78 -0.27 -17.87 16 21 C -0.24 -6.55 9.86 -15.06 -0.15 -6.70 16 22 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -28.29 13.06 55.49 0.72 -27.56 16 25 Si 0.90 22.34 29.55 -169.99 -5.02 17.31 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 C -0.09 -1.32 2.34 -92.12 -0.22 -1.54 16 30 H 0.07 1.06 8.12 -51.93 -0.42 0.64 16 31 C 0.12 2.03 4.88 -3.50 -0.02 2.01 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.80 8.14 -51.94 -0.42 0.38 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.10 0.79 7.88 -51.93 -0.41 0.38 16 39 H 0.10 0.73 8.08 -51.93 -0.42 0.31 16 40 H 0.07 0.52 7.33 -51.93 -0.38 0.13 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.78 7.94 -51.93 -0.41 0.37 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.39 10.02 5.70 -40.82 -0.23 9.79 16 49 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 50 H 0.07 1.43 8.08 -51.93 -0.42 1.01 16 51 H 0.07 1.48 7.32 -51.93 -0.38 1.10 16 LS Contribution 405.98 15.07 6.12 6.12 Total: -1.00 -34.92 405.98 -9.14 -44.06 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -8.53 Total: 6.65 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -2.28 Total: -6.19 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: 0.29 Total: -59.26 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.28 Total: -8.70 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.92 -9.14 -44.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992912107.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.352 kcal (2) G-P(sol) polarization free energy of solvation -34.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds