Wall clock time and date at job start Wed Apr 1 2020 04:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30174 * 126.80159 * 2 1 4 4 O 1.20914 * 111.60281 * 180.02562 * 3 2 1 5 5 C 1.34035 * 111.57138 * 0.02562 * 4 3 2 6 6 C 1.50706 * 126.78088 * 179.97438 * 5 4 3 7 7 C 1.35447 * 106.44562 * 0.24016 * 5 4 3 8 8 C 1.50704 * 128.01100 * 179.73661 * 7 5 4 9 9 C 1.50701 * 109.46932 * 89.99662 * 8 7 5 10 10 O 1.21282 * 120.00094 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99545 * 180.02562 * 9 8 7 12 12 C 1.47067 * 125.44897 * 0.02931 * 11 9 8 13 13 C 1.55056 * 105.86122 * 199.58891 * 12 11 9 14 14 H 1.08994 * 111.62384 * 208.18337 * 13 12 11 15 15 C 1.52906 * 107.37987 * 85.78733 * 13 12 11 16 16 C 1.52856 * 109.62994 * 193.25003 * 15 13 12 17 17 C 1.52656 * 108.65334 * 64.95074 * 16 15 13 18 18 C 1.51500 * 110.88706 * 300.18727 * 17 16 15 19 19 H 1.09000 * 108.29793 * 285.50703 * 18 17 16 20 20 N 1.46495 * 108.30301 * 168.37574 * 18 17 16 21 21 C 1.36943 * 119.99983 * 84.99668 * 20 18 17 22 22 H 1.07998 * 119.99463 * 0.02562 * 21 20 18 23 23 C 1.38810 * 120.00353 * 179.97438 * 21 20 18 24 24 N 1.31621 * 119.99766 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00189 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47171 * 90.00314 * 25 23 21 27 27 H 1.48502 * 109.46961 * 210.00236 * 25 23 21 28 28 H 1.48498 * 109.47100 * 329.99986 * 25 23 21 29 29 C 1.49683 * 115.37006 * 47.03365 * 18 17 16 30 30 H 1.08998 * 107.66927 * 200.47070 * 29 18 17 31 31 C 1.47138 * 125.43903 * 179.72506 * 11 9 8 32 32 H 1.09004 * 109.46902 * 89.98018 * 1 2 3 33 33 H 1.09004 * 109.46883 * 209.97004 * 1 2 3 34 34 H 1.08986 * 109.47446 * 329.97447 * 1 2 3 35 35 H 1.09001 * 109.46953 * 0.02562 * 6 5 4 36 36 H 1.09000 * 109.47318 * 120.02019 * 6 5 4 37 37 H 1.09000 * 109.47161 * 240.02649 * 6 5 4 38 38 H 1.08999 * 109.47336 * 210.00345 * 8 7 5 39 39 H 1.09006 * 109.46778 * 330.00359 * 8 7 5 40 40 H 1.09002 * 110.16920 * 318.68558 * 12 11 9 41 41 H 1.08999 * 110.17590 * 80.48842 * 12 11 9 42 42 H 1.08998 * 109.44204 * 313.30384 * 15 13 12 43 43 H 1.09002 * 109.44056 * 73.20488 * 15 13 12 44 44 H 1.09003 * 109.60808 * 184.69580 * 16 15 13 45 45 H 1.08996 * 109.61107 * 305.20237 * 16 15 13 46 46 H 1.09002 * 109.19537 * 60.54446 * 17 16 15 47 47 H 1.08994 * 109.19600 * 179.86958 * 17 16 15 48 48 H 0.97001 * 120.00458 * 265.00002 * 20 18 17 49 49 H 0.97004 * 120.00363 * 179.97438 * 24 23 21 50 50 H 1.09000 * 109.97342 * 299.85853 * 31 11 9 51 51 H 1.08998 * 109.97852 * 61.13980 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6025 -0.6067 -0.0015 6 6 4.9022 -1.3696 -0.0029 7 6 2.3540 -1.1320 -0.0070 8 6 1.9591 -2.5864 -0.0157 9 6 1.8245 -3.0788 1.4022 10 8 2.0286 -2.3231 2.3286 11 7 1.4772 -4.3590 1.6408 12 6 1.2034 -5.3743 0.6126 13 6 0.3837 -6.4839 1.3205 14 1 0.5383 -7.4569 0.8542 15 6 -1.0868 -6.0679 1.2702 16 6 -1.9003 -6.9405 2.2258 17 6 -1.4406 -6.6601 3.6542 18 6 0.0323 -6.9741 3.8191 19 1 0.1501 -8.0573 3.8479 20 7 0.4774 -6.4308 5.1047 21 6 0.3134 -7.1622 6.2508 22 1 -0.1437 -8.1397 6.2067 23 6 0.7356 -6.6477 7.4689 24 7 1.2932 -5.4567 7.5225 25 14 0.5125 -7.6457 9.0321 26 1 1.7129 -8.4911 9.2552 27 1 0.3331 -6.7267 10.1847 28 1 -0.6858 -8.5126 8.8991 29 6 0.9273 -6.4322 2.7486 30 1 1.8524 -7.0083 2.7679 31 6 1.3176 -4.9659 2.9716 32 1 -0.3633 0.0004 -1.0277 33 1 -0.3633 -0.8903 0.5134 34 1 -0.3633 0.8896 0.5142 35 1 5.7357 -0.6671 -0.0025 36 1 4.9560 -1.9975 0.8865 37 1 4.9551 -1.9957 -0.8935 38 1 1.0061 -2.7010 -0.5322 39 1 2.7239 -3.1674 -0.5310 40 1 0.6227 -4.9387 -0.2005 41 1 2.1384 -5.7837 0.2302 42 1 -1.1785 -5.0228 1.5660 43 1 -1.4644 -6.1918 0.2552 44 1 -2.9592 -6.7006 2.1286 45 1 -1.7378 -7.9920 1.9891 46 1 -1.6109 -5.6087 3.8856 47 1 -2.0171 -7.2767 4.3438 48 1 0.8883 -5.5530 5.1442 49 1 1.5879 -5.0969 8.3737 50 1 2.2565 -4.9077 3.5224 51 1 0.5297 -4.4527 3.5229 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992912107.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:48 Heat of formation + Delta-G solvation = 4.437895 kcal Electronic energy + Delta-G solvation = -31776.191659 eV Core-core repulsion = 27677.537320 eV Total energy + Delta-G solvation = -4098.654338 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.91424 -41.69738 -39.88530 -36.99568 -36.26551 -35.46814 -34.60380 -33.44186 -32.28224 -30.85801 -30.25289 -29.61206 -28.30360 -27.75495 -25.92856 -25.22210 -23.11486 -22.67282 -22.09091 -21.22178 -20.33211 -19.71694 -19.09441 -18.69892 -17.99292 -17.82768 -17.23236 -16.75110 -16.47541 -16.14206 -15.48378 -15.34102 -15.32309 -14.95519 -14.74372 -14.55756 -14.30735 -14.19109 -14.08715 -13.94593 -13.86519 -13.54712 -13.46656 -13.43768 -13.17951 -13.11499 -12.96130 -12.82381 -12.74123 -12.46680 -12.24028 -12.10755 -11.98204 -11.90815 -11.86565 -11.26091 -11.20279 -11.10273 -10.96911 -10.77413 -10.68562 -10.08575 -9.61379 -9.00850 -7.94379 -5.23407 0.48214 1.13775 1.44096 1.46203 1.54506 1.63211 2.06366 2.23533 2.54687 3.21065 3.38643 3.44930 3.52500 3.53976 3.73607 3.78823 3.87210 3.99818 4.18027 4.25820 4.32448 4.32890 4.34324 4.43904 4.47219 4.54351 4.58189 4.61261 4.66575 4.68434 4.72113 4.75806 4.77571 4.86192 4.86758 4.88244 4.97898 5.01371 5.11247 5.11753 5.22386 5.24774 5.29764 5.32932 5.40112 5.46783 5.53998 5.62993 5.75611 6.27445 6.59246 7.18774 7.29826 7.32569 8.10855 8.31037 9.29183 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012247 B = 0.002870 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.653248 B = 9752.717490 C =10922.408282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.021 3.979 3 N -0.404 5.404 4 O 0.077 5.923 5 C -0.019 4.019 6 C -0.075 4.075 7 C -0.202 4.202 8 C -0.041 4.041 9 C 0.517 3.483 10 O -0.593 6.593 11 N -0.610 5.610 12 C 0.096 3.904 13 C -0.079 4.079 14 H 0.132 0.868 15 C -0.107 4.107 16 C -0.109 4.109 17 C -0.124 4.124 18 C 0.187 3.813 19 H 0.047 0.953 20 N -0.746 5.746 21 C -0.234 4.234 22 H 0.079 0.921 23 C -0.081 4.081 24 N -0.975 5.975 25 Si 0.971 3.029 26 H -0.286 1.286 27 H -0.301 1.301 28 H -0.267 1.267 29 C -0.082 4.082 30 H 0.068 0.932 31 C 0.132 3.868 32 H 0.109 0.891 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.125 0.875 38 H 0.138 0.862 39 H 0.144 0.856 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.040 0.960 43 H 0.102 0.898 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.025 0.975 47 H 0.038 0.962 48 H 0.371 0.629 49 H 0.248 0.752 50 H 0.031 0.969 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.204 -0.421 -27.803 27.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.138 4.138 3 N -0.114 5.114 4 O 0.017 5.983 5 C -0.082 4.082 6 C -0.132 4.132 7 C -0.206 4.206 8 C -0.081 4.081 9 C 0.307 3.693 10 O -0.474 6.474 11 N -0.343 5.343 12 C -0.025 4.025 13 C -0.098 4.098 14 H 0.149 0.851 15 C -0.144 4.144 16 C -0.147 4.147 17 C -0.164 4.164 18 C 0.079 3.921 19 H 0.065 0.935 20 N -0.387 5.387 21 C -0.366 4.366 22 H 0.097 0.903 23 C -0.273 4.273 24 N -0.626 5.626 25 Si 0.801 3.199 26 H -0.213 1.213 27 H -0.228 1.228 28 H -0.191 1.191 29 C -0.102 4.102 30 H 0.086 0.914 31 C 0.008 3.992 32 H 0.127 0.873 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.100 0.900 37 H 0.143 0.857 38 H 0.156 0.844 39 H 0.162 0.838 40 H 0.132 0.868 41 H 0.114 0.886 42 H 0.059 0.941 43 H 0.120 0.880 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.044 0.956 47 H 0.057 0.943 48 H 0.204 0.796 49 H 0.057 0.943 50 H 0.050 0.950 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 0.108 1.212 -27.220 27.247 hybrid contribution 0.096 -0.240 2.446 2.460 sum 0.204 0.972 -24.774 24.794 Atomic orbital electron populations 1.20263 0.84534 1.03744 1.04710 1.23940 1.00140 0.88688 1.00990 1.73775 0.89844 1.25134 1.22685 1.84726 1.21488 1.23642 1.68491 1.24946 0.99719 0.83275 1.00280 1.20565 0.88580 0.98854 1.05152 1.20580 0.91849 0.96959 1.11233 1.19946 1.07204 0.88944 0.91958 1.21022 0.75906 0.79949 0.92397 1.90759 1.52324 1.56018 1.48268 1.48540 1.67721 1.09985 1.08088 1.22818 1.01260 0.87858 0.90566 1.22072 0.95270 1.00483 0.91942 0.85053 1.21558 0.93684 0.98499 1.00686 1.21393 0.99473 1.00986 0.92814 1.21723 0.97443 0.99379 0.97837 1.19351 0.91992 0.96602 0.84167 0.93498 1.43010 1.72794 1.20011 1.02877 1.19673 1.31073 0.99216 0.86631 0.90336 1.25576 1.02564 0.98091 1.01050 1.69858 1.48641 1.19049 1.25056 0.85165 0.78045 0.77426 0.79314 1.21330 1.22804 1.19148 1.20982 0.99613 0.93240 0.96358 0.91389 1.21380 0.98554 0.94281 0.85005 0.87281 0.90070 0.91179 0.88572 0.89978 0.85703 0.84430 0.83785 0.86758 0.88567 0.94103 0.88005 0.91534 0.90270 0.95604 0.94276 0.79626 0.94350 0.95014 0.95132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 10.39 71.24 0.74 -0.74 16 2 C 0.02 0.56 7.33 43.58 0.32 0.87 16 3 N -0.40 -12.17 12.07 -49.57 -0.60 -12.77 16 4 O 0.08 2.14 11.20 71.69 0.80 2.94 16 5 C -0.02 -0.42 7.49 25.04 0.19 -0.23 16 6 C -0.07 -1.00 10.23 71.24 0.73 -0.27 16 7 C -0.20 -4.61 4.81 -19.73 -0.10 -4.71 16 8 C -0.04 -0.66 5.06 29.10 0.15 -0.51 16 9 C 0.52 14.38 7.84 87.66 0.69 15.06 16 10 O -0.59 -24.40 16.35 -3.04 -0.05 -24.45 16 11 N -0.61 -15.48 3.31 -813.98 -2.69 -18.17 16 12 C 0.10 1.28 5.94 86.98 0.52 1.80 16 13 C -0.08 -1.32 3.40 -10.15 -0.03 -1.35 16 14 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 15 C -0.11 -1.83 4.89 30.51 0.15 -1.68 16 16 C -0.11 -2.35 5.94 30.43 0.18 -2.17 16 17 C -0.12 -4.20 5.40 29.99 0.16 -4.04 16 18 C 0.19 6.94 2.53 43.44 0.11 7.05 16 19 H 0.05 1.74 8.01 -2.39 -0.02 1.73 16 20 N -0.75 -37.91 4.86 -330.40 -1.60 -39.51 16 21 C -0.23 -13.10 9.86 84.03 0.83 -12.27 16 22 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 23 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 24 N -0.97 -62.64 13.06 21.65 0.28 -62.36 16 25 Si 0.97 47.32 29.55 68.60 2.03 49.35 16 26 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 27 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 28 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 29 C -0.08 -2.40 2.34 -11.77 -0.03 -2.43 16 30 H 0.07 2.01 8.12 -2.39 -0.02 1.99 16 31 C 0.13 4.68 4.88 86.38 0.42 5.11 16 32 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.14 1.33 7.88 -2.39 -0.02 1.31 16 39 H 0.14 1.18 8.08 -2.38 -0.02 1.16 16 40 H 0.11 0.72 7.33 -2.39 -0.02 0.71 16 41 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.04 0.90 7.94 -2.39 -0.02 0.88 16 43 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.37 20.88 5.70 -92.71 -0.53 20.35 16 49 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 50 H 0.03 1.36 8.08 -2.39 -0.02 1.34 16 51 H 0.03 1.34 7.32 -2.39 -0.02 1.32 16 Total: -1.00 -86.95 405.98 4.05 -82.90 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: 0.40 Total: 26.90 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: 5.49 Total: -4.83 kcal Atomic # 7 Polarization: -128.20 SS G_CDS: -4.61 Total: -132.81 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: 0.75 Total: -21.50 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -86.95 4.05 -82.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992912107.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.338 kcal (2) G-P(sol) polarization free energy of solvation -86.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds