Wall clock time and date at job start Wed Apr 1 2020 05:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35680 * 116.99977 * 2 1 4 4 C 1.38920 * 119.68513 * 179.97438 * 3 2 1 5 5 C 1.38374 * 119.11240 * 179.74582 * 4 3 2 6 6 C 1.38833 * 118.48482 * 0.53645 * 5 4 3 7 7 C 1.50696 * 120.35804 * 179.73483 * 6 5 4 8 8 C 1.52997 * 109.47055 * 269.72330 * 7 6 5 9 9 C 1.50706 * 109.47238 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99507 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00020 * 180.02562 * 9 8 7 12 12 C 1.47014 * 125.64867 * 0.02566 * 11 9 8 13 13 C 1.54330 * 107.27127 * 181.02402 * 12 11 9 14 14 H 1.09003 * 110.71679 * 263.82885 * 13 12 11 15 15 N 1.46495 * 110.71972 * 140.73721 * 13 12 11 16 16 C 1.36942 * 120.00291 * 86.45433 * 15 13 12 17 17 H 1.07998 * 119.99639 * 359.97438 * 16 15 13 18 18 C 1.38809 * 119.99674 * 179.97438 * 16 15 13 19 19 N 1.31620 * 120.00343 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99770 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47032 * 89.99737 * 20 18 16 22 22 H 1.48497 * 109.47359 * 210.00198 * 20 18 16 23 23 H 1.48500 * 109.47085 * 330.00660 * 20 18 16 24 24 C 1.55153 * 102.93957 * 22.19189 * 13 12 11 25 25 C 1.52997 * 111.00233 * 82.57442 * 24 13 12 26 26 C 1.53005 * 111.00247 * 206.42318 * 24 13 12 27 27 C 1.47424 * 125.64703 * 179.71861 * 11 9 8 28 28 C 1.38053 * 119.28969 * 359.46156 * 6 5 4 29 29 N 1.31969 * 120.83274 * 0.27439 * 28 6 5 30 30 H 1.09003 * 109.46930 * 59.99944 * 1 2 3 31 31 H 1.09003 * 109.46983 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47270 * 300.00220 * 1 2 3 33 33 H 1.07997 * 120.44102 * 0.02562 * 4 3 2 34 34 H 1.07996 * 120.76407 * 180.29444 * 5 4 3 35 35 H 1.09001 * 109.47328 * 149.72601 * 7 6 5 36 36 H 1.09004 * 109.47043 * 29.72411 * 7 6 5 37 37 H 1.09001 * 109.46832 * 59.99966 * 8 7 6 38 38 H 1.09000 * 109.47611 * 300.00263 * 8 7 6 39 39 H 1.08996 * 109.88656 * 300.44099 * 12 11 9 40 40 H 1.09001 * 109.88483 * 61.60830 * 12 11 9 41 41 H 0.97002 * 119.99841 * 266.44584 * 15 13 12 42 42 H 0.97003 * 119.99485 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.47200 * 60.00249 * 25 24 13 44 44 H 1.08999 * 109.47224 * 179.97438 * 25 24 13 45 45 H 1.08991 * 109.47302 * 299.99722 * 25 24 13 46 46 H 1.09006 * 109.46973 * 60.00361 * 26 24 13 47 47 H 1.08998 * 109.46856 * 179.97438 * 26 24 13 48 48 H 1.09002 * 109.47163 * 300.00249 * 26 24 13 49 49 H 1.09002 * 110.36966 * 274.74598 * 27 11 9 50 50 H 1.09002 * 110.36639 * 37.06818 * 27 11 9 51 51 H 1.07992 * 119.58618 * 180.25273 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2740 0.0005 5 6 4.0485 2.5131 -0.0048 6 6 3.2505 3.6492 0.0008 7 6 3.8767 5.0198 0.0014 8 6 4.0881 5.4834 1.4440 9 6 4.7150 6.8539 1.4446 10 8 4.9673 7.4056 0.3944 11 7 4.9951 7.4663 2.6120 12 6 4.7432 6.9144 3.9511 13 6 5.1987 7.9741 4.9765 14 1 6.2115 7.7661 5.3219 15 7 4.2696 8.0339 6.1075 16 6 4.4310 7.1874 7.1719 17 1 5.2431 6.4755 7.1772 18 6 3.5508 7.2446 8.2437 19 7 2.5608 8.1119 8.2368 20 14 3.7705 6.0895 9.6953 21 1 4.6524 6.7268 10.7059 22 1 2.4469 5.8021 10.3040 23 1 4.3872 4.8213 9.2298 24 6 5.1577 9.2908 4.1570 25 6 3.7396 9.8632 4.1095 26 6 6.1426 10.3178 4.7194 27 6 5.6107 8.7980 2.7576 28 6 1.8770 3.5098 0.0003 29 7 1.3185 2.3141 -0.0001 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 4.0228 0.3696 0.0005 34 1 5.1254 2.5948 -0.0093 35 1 3.2184 5.7203 -0.5126 36 1 4.8375 4.9806 -0.5121 37 1 4.7464 4.7830 1.9579 38 1 3.1274 5.5227 1.9575 39 1 3.6794 6.7123 4.0747 40 1 5.3153 5.9967 4.0875 41 1 3.5400 8.6731 6.1025 42 1 1.9460 8.1520 8.9861 43 1 3.3978 10.0718 5.1233 44 1 3.7394 10.7860 3.5294 45 1 3.0713 9.1399 3.6424 46 1 7.1535 9.9120 4.6784 47 1 6.0937 11.2308 4.1262 48 1 5.8827 10.5418 5.7540 49 1 6.6970 8.7207 2.7134 50 1 5.2456 9.4715 1.9822 51 1 1.2517 4.3902 0.0005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996039114.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:47 Heat of formation + Delta-G solvation = -49.803649 kcal Electronic energy + Delta-G solvation = -30424.669811 eV Core-core repulsion = 26323.663383 eV Total energy + Delta-G solvation = -4101.006428 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.68907 -41.27643 -39.47241 -38.92523 -35.84207 -35.18526 -34.51358 -33.18152 -32.63508 -30.84352 -29.12253 -28.42832 -28.26253 -27.47834 -25.81639 -25.23763 -24.37357 -22.98643 -22.35630 -20.31185 -19.81234 -19.38627 -19.11602 -18.16204 -18.04389 -17.27384 -17.00200 -16.68619 -16.41626 -15.89691 -15.75834 -15.59961 -15.46160 -15.25923 -14.99807 -14.62894 -14.38348 -14.28776 -14.13774 -14.03286 -13.74367 -13.48879 -13.29460 -13.20359 -12.98417 -12.89822 -12.81528 -12.78374 -12.55858 -12.50337 -12.11022 -12.07935 -12.05824 -12.02310 -11.83081 -11.48282 -11.29065 -10.99571 -10.87932 -10.77668 -10.61047 -9.58698 -9.37770 -9.01183 -7.91945 -5.20329 0.13425 0.27506 1.50946 1.51493 1.59213 1.64524 2.04503 2.15567 2.58695 2.74621 3.32402 3.38041 3.40936 3.68406 3.82867 3.85267 3.92748 3.98642 4.03074 4.15806 4.21605 4.27371 4.31870 4.34932 4.40720 4.44063 4.45121 4.47941 4.62107 4.70117 4.73110 4.74456 4.81541 4.87251 4.91559 4.93399 4.99141 5.04571 5.09993 5.14577 5.19374 5.25223 5.33976 5.37497 5.44517 5.49473 5.53627 5.57981 6.22080 6.29880 6.57885 6.82993 7.16615 7.38326 8.11919 8.35502 9.31107 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008481 B = 0.002715 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3300.826680 B =10312.348916 C =12828.834140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.322 6.322 3 C 0.291 3.709 4 C -0.191 4.191 5 C -0.034 4.034 6 C -0.167 4.167 7 C -0.042 4.042 8 C -0.126 4.126 9 C 0.525 3.475 10 O -0.581 6.581 11 N -0.611 5.611 12 C 0.088 3.912 13 C 0.171 3.829 14 H 0.067 0.933 15 N -0.722 5.722 16 C -0.237 4.237 17 H 0.079 0.921 18 C -0.070 4.070 19 N -0.967 5.967 20 Si 0.965 3.035 21 H -0.290 1.290 22 H -0.301 1.301 23 H -0.268 1.268 24 C -0.079 4.079 25 C -0.125 4.125 26 C -0.125 4.125 27 C 0.120 3.880 28 C 0.131 3.869 29 N -0.558 5.558 30 H 0.056 0.944 31 H 0.122 0.878 32 H 0.051 0.949 33 H 0.159 0.841 34 H 0.168 0.832 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.380 0.620 42 H 0.249 0.751 43 H 0.047 0.953 44 H 0.070 0.930 45 H 0.041 0.959 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.045 0.955 49 H 0.080 0.920 50 H 0.074 0.926 51 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.472 -9.037 -17.721 20.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.230 6.230 3 C 0.113 3.887 4 C -0.211 4.211 5 C -0.059 4.059 6 C -0.169 4.169 7 C -0.081 4.081 8 C -0.165 4.165 9 C 0.316 3.684 10 O -0.463 6.463 11 N -0.344 5.344 12 C -0.038 4.038 13 C 0.061 3.939 14 H 0.085 0.915 15 N -0.363 5.363 16 C -0.369 4.369 17 H 0.097 0.903 18 C -0.262 4.262 19 N -0.618 5.618 20 Si 0.795 3.205 21 H -0.217 1.217 22 H -0.228 1.228 23 H -0.193 1.193 24 C -0.080 4.080 25 C -0.183 4.183 26 C -0.182 4.182 27 C -0.003 4.003 28 C -0.024 4.024 29 N -0.281 5.281 30 H 0.074 0.926 31 H 0.140 0.860 32 H 0.070 0.930 33 H 0.177 0.823 34 H 0.186 0.814 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.216 0.784 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.089 0.911 45 H 0.060 0.940 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.064 0.936 49 H 0.098 0.902 50 H 0.092 0.908 51 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 2.824 -9.292 -18.201 20.630 hybrid contribution -0.130 -0.145 1.258 1.273 sum 2.694 -9.437 -16.943 19.580 Atomic orbital electron populations 1.23007 0.76151 1.04501 1.02009 1.86208 1.24119 1.24646 1.88002 1.20227 0.90371 0.84827 0.93318 1.21348 0.91530 1.00680 1.07586 1.21682 1.01884 0.90037 0.92265 1.20755 0.94508 0.96626 1.05045 1.20058 1.01926 0.91323 0.94752 1.21649 1.02714 0.92555 0.99629 1.20771 0.77775 0.88250 0.81629 1.90656 1.56018 1.68131 1.31452 1.48560 1.60745 1.19099 1.05989 1.22950 1.00784 0.98750 0.81327 1.21409 0.93609 0.92384 0.86534 0.91507 1.42656 1.33351 1.43058 1.17284 1.19621 1.09299 1.11869 0.96104 0.90268 1.25445 0.98179 1.01235 1.01367 1.69800 1.19081 1.40150 1.32721 0.85265 0.76121 0.79128 0.79988 1.21734 1.22824 1.19332 1.21962 0.96576 0.95600 0.93857 1.21560 0.95056 1.00448 1.01228 1.21617 0.98016 0.98046 1.00565 1.22355 0.97915 0.83640 0.96348 1.22624 0.93099 0.93650 0.93045 1.67312 1.41661 0.99333 1.19834 0.92573 0.86011 0.93016 0.82337 0.81416 0.90400 0.89670 0.87533 0.88652 0.92508 0.91102 0.78419 0.94163 0.93412 0.91118 0.94018 0.91398 0.90932 0.93552 0.90197 0.90782 0.81299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.38 113.37 1.18 1.80 16 2 O -0.32 -6.98 10.48 -89.98 -0.94 -7.93 16 3 C 0.29 6.63 7.49 84.79 0.63 7.27 16 4 C -0.19 -3.50 10.04 22.47 0.23 -3.27 16 5 C -0.03 -0.54 9.85 22.44 0.22 -0.32 16 6 C -0.17 -3.07 5.15 -19.77 -0.10 -3.17 16 7 C -0.04 -0.79 4.66 29.85 0.14 -0.65 16 8 C -0.13 -2.66 4.87 29.85 0.15 -2.51 16 9 C 0.53 14.56 7.85 87.66 0.69 15.25 16 10 O -0.58 -19.15 16.24 -3.02 -0.05 -19.20 16 11 N -0.61 -17.26 3.31 -811.37 -2.69 -19.94 16 12 C 0.09 2.72 5.92 86.73 0.51 3.23 16 13 C 0.17 5.92 2.84 46.18 0.13 6.05 16 14 H 0.07 2.31 8.02 -2.39 -0.02 2.29 16 15 N -0.72 -32.61 5.08 -317.33 -1.61 -34.22 16 16 C -0.24 -12.02 9.98 84.03 0.84 -11.18 16 17 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 18 C -0.07 -3.76 5.50 84.86 0.47 -3.30 16 19 N -0.97 -56.34 13.06 21.65 0.28 -56.05 16 20 Si 0.96 43.97 29.55 68.60 2.03 46.00 16 21 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 22 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 24 C -0.08 -2.28 0.87 -50.71 -0.04 -2.32 16 25 C -0.13 -3.89 7.95 71.98 0.57 -3.32 16 26 C -0.12 -3.20 8.68 71.98 0.62 -2.58 16 27 C 0.12 3.20 5.85 86.93 0.51 3.71 16 28 C 0.13 2.72 10.85 84.63 0.92 3.64 16 29 N -0.56 -13.32 9.22 -308.94 -2.85 -16.17 16 30 H 0.06 0.92 8.10 -2.39 -0.02 0.90 16 31 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 33 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.08 1.54 8.05 -2.39 -0.02 1.52 16 36 H 0.08 1.55 8.05 -2.38 -0.02 1.53 16 37 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.06 1.98 8.03 -2.39 -0.02 1.96 16 40 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.38 18.65 5.28 -92.71 -0.49 18.16 16 42 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 43 H 0.05 1.73 6.35 -2.39 -0.02 1.71 16 44 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.04 1.37 7.91 -2.39 -0.02 1.35 16 46 H 0.07 1.54 8.07 -2.38 -0.02 1.52 16 47 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.08 1.92 7.99 -2.39 -0.02 1.90 16 50 H 0.07 2.00 7.95 -2.39 -0.02 1.98 16 51 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -66.23 416.20 2.26 -63.98 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: 0.42 Total: 35.20 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 7.66 Total: 8.33 kcal Atomic # 7 Polarization: -119.52 SS G_CDS: -6.86 Total: -126.38 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.99 Total: -27.13 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -66.23 2.26 -63.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996039114.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.175 kcal (2) G-P(sol) polarization free energy of solvation -66.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds