Wall clock time and date at job start Wed Apr 1 2020 05:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 110.28635 * 2 1 4 4 C 1.54004 * 110.32733 * 122.13834 * 2 1 3 5 5 N 1.47483 * 107.08427 * 117.59033 * 4 2 1 6 6 C 1.34770 * 127.03369 * 205.41141 * 5 4 2 7 7 O 1.21583 * 119.99830 * 0.02562 * 6 5 4 8 8 C 1.47509 * 120.00227 * 179.97438 * 6 5 4 9 9 C 1.36823 * 126.94779 * 179.70979 * 8 6 5 10 10 C 1.41264 * 103.85057 * 179.90593 * 9 8 6 11 11 C 1.50693 * 126.70647 * 180.12282 * 10 9 8 12 12 C 1.54267 * 110.03418 * 33.16666 * 11 10 9 13 13 C 1.54957 * 104.16206 * 217.13710 * 12 11 10 14 14 C 1.54890 * 102.78164 * 37.88507 * 13 12 11 15 15 C 1.53880 * 110.03561 * 275.95069 * 11 10 9 16 16 N 1.30127 * 106.58489 * 0.36481 * 10 9 8 17 17 O 1.20884 * 111.98634 * 359.75977 * 16 10 9 18 18 C 1.48117 * 105.93483 * 25.44320 * 5 4 2 19 19 C 1.54616 * 110.32542 * 237.87259 * 2 1 3 20 20 H 1.08995 * 110.74199 * 337.58957 * 19 2 1 21 21 N 1.46498 * 110.74261 * 100.92062 * 19 2 1 22 22 C 1.36937 * 119.99957 * 204.99721 * 21 19 2 23 23 H 1.08004 * 120.00136 * 359.97438 * 22 21 19 24 24 C 1.38813 * 119.99909 * 179.97438 * 22 21 19 25 25 N 1.31615 * 119.99901 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99965 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47199 * 89.99856 * 26 24 22 28 28 H 1.48491 * 109.47162 * 210.00104 * 26 24 22 29 29 H 1.48502 * 109.47123 * 330.00238 * 26 24 22 30 30 H 1.08998 * 109.46951 * 60.69943 * 1 2 3 31 31 H 1.09005 * 109.46741 * 180.69590 * 1 2 3 32 32 H 1.08996 * 109.47202 * 300.69826 * 1 2 3 33 33 H 1.09004 * 109.46996 * 59.30456 * 3 2 1 34 34 H 1.09005 * 109.46669 * 179.29583 * 3 2 1 35 35 H 1.08995 * 109.47932 * 299.30018 * 3 2 1 36 36 H 1.09001 * 109.90740 * 236.94638 * 4 2 1 37 37 H 1.08995 * 109.91416 * 358.22739 * 4 2 1 38 38 H 1.08000 * 128.07565 * 0.02562 * 9 8 6 39 39 H 1.08996 * 110.01657 * 154.55954 * 11 10 9 40 40 H 1.09000 * 110.48394 * 335.78109 * 12 11 10 41 41 H 1.08995 * 110.48569 * 98.42327 * 12 11 10 42 42 H 1.09001 * 110.71982 * 279.57105 * 13 12 11 43 43 H 1.09002 * 110.92838 * 156.29415 * 13 12 11 44 44 H 1.08997 * 110.49121 * 203.40760 * 14 13 12 45 45 H 1.09009 * 110.48410 * 80.75963 * 14 13 12 46 46 H 1.09000 * 110.02849 * 238.57461 * 15 11 10 47 47 H 1.09004 * 110.02736 * 359.97438 * 15 11 10 48 48 H 1.09001 * 110.66111 * 79.14837 * 18 5 4 49 49 H 1.08994 * 110.66432 * 202.27327 * 18 5 4 50 50 H 0.97001 * 120.00006 * 24.99595 * 21 19 2 51 51 H 0.97001 * 119.99530 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0605 1.4351 0.0000 4 6 2.0650 -0.7682 1.2228 5 7 2.8278 -1.9217 0.7102 6 6 3.0626 -3.0867 1.3457 7 8 2.6244 -3.2675 2.4652 8 6 3.8504 -4.1429 0.6825 9 6 4.1770 -5.3691 1.1941 10 6 4.9261 -5.9774 0.1624 11 6 5.5407 -7.3531 0.1864 12 6 4.6565 -8.3127 1.0094 13 6 5.6701 -9.2218 1.7491 14 6 6.8111 -8.2390 2.1113 15 6 6.9103 -7.3066 0.8864 16 7 4.9861 -5.1156 -0.8107 17 8 4.3982 -4.0929 -0.5464 18 6 3.2837 -1.5375 -0.6457 19 6 2.0671 -0.7711 -1.2279 20 1 1.3176 -1.4667 -1.6050 21 7 2.4907 0.1574 -2.2789 22 6 2.5088 -0.2504 -3.5861 23 1 2.2112 -1.2565 -3.8421 24 6 2.9097 0.6295 -4.5821 25 7 3.2719 1.8558 -4.2701 26 14 2.9337 0.0736 -6.3653 27 1 1.6165 0.3570 -6.9900 28 1 3.9970 0.8066 -7.0980 29 1 3.2063 -1.3849 -6.4255 30 1 -0.3633 0.5029 -0.8962 31 1 -0.3633 -1.0277 0.0125 32 1 -0.3633 0.5246 0.8836 33 1 1.6944 1.9578 0.8837 34 1 3.1504 1.4195 0.0126 35 1 1.7149 1.9504 -0.8961 36 1 2.7182 -0.1227 1.8101 37 1 1.2335 -1.1159 1.8358 38 1 3.9203 -5.7775 2.1604 39 1 5.6537 -7.7291 -0.8304 40 1 4.0517 -7.7552 1.7247 41 1 4.0211 -8.9051 0.3511 42 1 6.0338 -10.0099 1.0898 43 1 5.2266 -9.6474 2.6493 44 1 7.7472 -8.7781 2.2570 45 1 6.5548 -7.6693 3.0046 46 1 7.6877 -7.6606 0.2094 47 1 7.1306 -6.2887 1.2083 48 1 4.1554 -0.8856 -0.5881 49 1 3.5027 -2.4225 -1.2430 50 1 2.7584 1.0609 -2.0490 51 1 3.5524 2.4705 -4.9661 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996622859.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:25 Heat of formation + Delta-G solvation = 34.269437 kcal Electronic energy + Delta-G solvation = -31349.435419 eV Core-core repulsion = 27252.074673 eV Total energy + Delta-G solvation = -4097.360746 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.03238 -40.05171 -38.66431 -38.12339 -34.40151 -33.95699 -33.29278 -31.92303 -30.83826 -29.06622 -28.97612 -27.65662 -27.04716 -26.69737 -24.02421 -23.59796 -23.20801 -21.60397 -20.94772 -20.81313 -19.29573 -18.59573 -17.75870 -17.45228 -17.36309 -16.43514 -16.12807 -15.64759 -15.59095 -15.34682 -14.55980 -14.12620 -14.07917 -13.88892 -13.74375 -13.64192 -13.46755 -13.19539 -12.83758 -12.76213 -12.23390 -12.06481 -11.95699 -11.78325 -11.62080 -11.57042 -11.45749 -11.41631 -11.24132 -11.01915 -10.99622 -10.93284 -10.83289 -10.62838 -10.49866 -10.24112 -10.19363 -10.12466 -9.92157 -9.74997 -9.68383 -9.06417 -8.55843 -7.07943 -5.85708 -3.15602 0.80561 1.97376 2.56626 3.02331 3.17447 3.40386 3.46842 3.47871 3.78187 4.11137 4.28982 4.42245 4.55071 4.61076 4.75508 4.94626 5.00714 5.03541 5.06901 5.11818 5.13828 5.18796 5.23409 5.31918 5.40726 5.45835 5.54521 5.57549 5.59530 5.66970 5.68040 5.75041 5.78699 5.82942 5.87221 5.96438 5.98214 5.99570 6.02623 6.12141 6.17684 6.24461 6.29122 6.38654 6.51019 6.58433 6.73675 6.87740 7.50287 7.65253 7.88604 8.14866 8.32746 9.45227 9.97973 10.33282 11.36379 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011214 B = 0.002933 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.235147 B = 9543.741130 C =11485.292330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 C -0.136 4.136 4 C 0.119 3.881 5 N -0.600 5.600 6 C 0.616 3.384 7 O -0.529 6.529 8 C -0.070 4.070 9 C -0.156 4.156 10 C 0.017 3.983 11 C -0.014 4.014 12 C -0.119 4.119 13 C -0.124 4.124 14 C -0.125 4.125 15 C -0.116 4.116 16 N -0.345 5.345 17 O 0.127 5.873 18 C 0.065 3.935 19 C 0.180 3.820 20 H 0.067 0.933 21 N -0.710 5.710 22 C -0.247 4.247 23 H 0.072 0.928 24 C -0.007 4.007 25 N -0.930 5.930 26 Si 0.906 3.094 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.280 1.280 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.180 0.820 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.079 0.921 49 H 0.085 0.915 50 H 0.392 0.608 51 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.415 -15.641 14.177 21.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.090 4.090 3 C -0.194 4.194 4 C -0.003 4.003 5 N -0.331 5.331 6 C 0.401 3.599 7 O -0.407 6.407 8 C -0.136 4.136 9 C -0.178 4.178 10 C -0.141 4.141 11 C -0.033 4.033 12 C -0.157 4.157 13 C -0.162 4.162 14 C -0.162 4.162 15 C -0.154 4.154 16 N -0.044 5.044 17 O 0.054 5.946 18 C -0.060 4.060 19 C 0.067 3.933 20 H 0.085 0.915 21 N -0.352 5.352 22 C -0.378 4.378 23 H 0.090 0.910 24 C -0.204 4.204 25 N -0.578 5.578 26 Si 0.737 3.263 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.206 1.206 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.197 0.803 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.086 0.914 48 H 0.097 0.903 49 H 0.103 0.897 50 H 0.229 0.771 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.762 -15.853 13.391 20.935 hybrid contribution 0.028 -0.089 -0.338 0.350 sum 2.790 -15.942 13.054 20.792 Atomic orbital electron populations 1.21801 0.93657 1.01451 1.01968 1.21758 0.96168 0.96297 0.94824 1.21770 1.01074 0.94388 1.02160 1.22279 0.95504 0.86001 0.96517 1.48697 1.51585 1.13763 1.19091 1.16122 0.79634 0.79741 0.84369 1.90834 1.52421 1.79593 1.17889 1.24192 1.03272 0.98422 0.87721 1.22690 1.00492 0.92751 1.01889 1.23540 1.01188 0.98732 0.90594 1.20205 0.94639 0.87101 1.01396 1.22513 0.97528 0.96860 0.98818 1.22505 0.95929 0.97554 1.00162 1.22377 0.98823 0.97138 0.97870 1.22194 0.95494 1.00556 0.97159 1.73779 1.12885 0.94469 1.23294 1.85171 1.49503 1.30840 1.29100 1.24091 1.01039 1.00934 0.79947 1.21280 0.92666 0.91521 0.87789 0.91459 1.42584 1.78472 1.12288 1.01880 1.19267 1.38034 0.97201 0.83291 0.91020 1.24733 1.01644 0.95907 0.98084 1.69648 1.50686 1.05105 1.32336 0.86204 0.77243 0.77828 0.85010 1.21663 1.21736 1.20599 0.91563 0.92966 0.93023 0.93249 0.92357 0.90407 0.91187 0.90446 0.80275 0.88993 0.90670 0.90950 0.91279 0.91168 0.91399 0.91354 0.90992 0.91440 0.90271 0.89674 0.77088 0.93358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 8.22 37.16 0.31 -1.51 16 2 C -0.09 -1.35 0.95 -153.13 -0.15 -1.49 16 3 C -0.14 -2.07 7.04 37.16 0.26 -1.81 16 4 C 0.12 1.71 6.29 -2.98 -0.02 1.69 16 5 N -0.60 -9.46 3.29 -170.89 -0.56 -10.02 16 6 C 0.62 9.92 7.89 -12.48 -0.10 9.82 16 7 O -0.53 -9.35 17.25 5.29 0.09 -9.26 16 8 C -0.07 -1.05 7.10 -36.32 -0.26 -1.31 16 9 C -0.16 -1.98 9.88 -38.94 -0.38 -2.36 16 10 C 0.02 0.22 6.01 -82.17 -0.49 -0.28 16 11 C -0.01 -0.13 3.43 -90.65 -0.31 -0.45 16 12 C -0.12 -0.91 6.32 -25.04 -0.16 -1.07 16 13 C -0.12 -0.77 6.91 -24.70 -0.17 -0.94 16 14 C -0.12 -0.84 6.83 -25.07 -0.17 -1.01 16 15 C -0.12 -0.97 6.45 -25.61 -0.17 -1.14 16 16 N -0.34 -5.32 12.04 33.52 0.40 -4.92 16 17 O 0.13 2.03 8.44 15.55 0.13 2.16 16 18 C 0.07 1.13 6.43 -2.03 -0.01 1.11 16 19 C 0.18 3.33 3.16 -65.96 -0.21 3.12 16 20 H 0.07 1.30 7.82 -51.93 -0.41 0.89 16 21 N -0.71 -16.26 4.97 -51.52 -0.26 -16.52 16 22 C -0.25 -6.45 9.96 -15.06 -0.15 -6.60 16 23 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 24 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 25 N -0.93 -26.69 13.06 55.49 0.72 -25.97 16 26 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.92 8.00 -51.93 -0.42 0.50 16 35 H 0.08 1.37 6.90 -51.93 -0.36 1.01 16 36 H 0.07 0.94 7.68 -51.93 -0.40 0.54 16 37 H 0.08 1.07 7.59 -51.93 -0.39 0.68 16 38 H 0.18 1.89 7.29 -52.49 -0.38 1.51 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.59 6.26 -51.93 -0.33 0.26 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.65 7.67 -51.93 -0.40 0.25 16 48 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 49 H 0.09 1.52 5.56 -51.93 -0.29 1.23 16 50 H 0.39 9.35 5.13 -40.82 -0.21 9.14 16 51 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 402.03 15.07 6.06 6.06 Total: -1.00 -29.61 402.03 -8.90 -38.52 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -8.20 Total: 7.73 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -2.28 Total: -4.51 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: 0.31 Total: -57.42 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: 0.22 Total: -7.10 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.61 -8.90 -38.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996622859.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.785 kcal (2) G-P(sol) polarization free energy of solvation -29.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds