Wall clock time and date at job start Wed Apr 1 2020 05:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 110.28635 * 2 1 4 4 C 1.54004 * 110.32733 * 122.13834 * 2 1 3 5 5 N 1.47483 * 107.08427 * 117.59033 * 4 2 1 6 6 C 1.34770 * 127.03369 * 205.41141 * 5 4 2 7 7 O 1.21583 * 119.99830 * 0.02562 * 6 5 4 8 8 C 1.47509 * 120.00227 * 179.97438 * 6 5 4 9 9 C 1.36823 * 126.94779 * 179.70979 * 8 6 5 10 10 C 1.41264 * 103.85057 * 179.90593 * 9 8 6 11 11 C 1.50693 * 126.70647 * 180.12282 * 10 9 8 12 12 C 1.54267 * 110.03418 * 33.16666 * 11 10 9 13 13 C 1.54957 * 104.16206 * 217.13710 * 12 11 10 14 14 C 1.54890 * 102.78164 * 37.88507 * 13 12 11 15 15 C 1.53880 * 110.03561 * 275.95069 * 11 10 9 16 16 N 1.30127 * 106.58489 * 0.36481 * 10 9 8 17 17 O 1.20884 * 111.98634 * 359.75977 * 16 10 9 18 18 C 1.48117 * 105.93483 * 25.44320 * 5 4 2 19 19 C 1.54616 * 110.32542 * 237.87259 * 2 1 3 20 20 H 1.08995 * 110.74199 * 337.58957 * 19 2 1 21 21 N 1.46498 * 110.74261 * 100.92062 * 19 2 1 22 22 C 1.36937 * 119.99957 * 204.99721 * 21 19 2 23 23 H 1.08004 * 120.00136 * 359.97438 * 22 21 19 24 24 C 1.38813 * 119.99909 * 179.97438 * 22 21 19 25 25 N 1.31615 * 119.99901 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 119.99965 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47199 * 89.99856 * 26 24 22 28 28 H 1.48491 * 109.47162 * 210.00104 * 26 24 22 29 29 H 1.48502 * 109.47123 * 330.00238 * 26 24 22 30 30 H 1.08998 * 109.46951 * 60.69943 * 1 2 3 31 31 H 1.09005 * 109.46741 * 180.69590 * 1 2 3 32 32 H 1.08996 * 109.47202 * 300.69826 * 1 2 3 33 33 H 1.09004 * 109.46996 * 59.30456 * 3 2 1 34 34 H 1.09005 * 109.46669 * 179.29583 * 3 2 1 35 35 H 1.08995 * 109.47932 * 299.30018 * 3 2 1 36 36 H 1.09001 * 109.90740 * 236.94638 * 4 2 1 37 37 H 1.08995 * 109.91416 * 358.22739 * 4 2 1 38 38 H 1.08000 * 128.07565 * 0.02562 * 9 8 6 39 39 H 1.08996 * 110.01657 * 154.55954 * 11 10 9 40 40 H 1.09000 * 110.48394 * 335.78109 * 12 11 10 41 41 H 1.08995 * 110.48569 * 98.42327 * 12 11 10 42 42 H 1.09001 * 110.71982 * 279.57105 * 13 12 11 43 43 H 1.09002 * 110.92838 * 156.29415 * 13 12 11 44 44 H 1.08997 * 110.49121 * 203.40760 * 14 13 12 45 45 H 1.09009 * 110.48410 * 80.75963 * 14 13 12 46 46 H 1.09000 * 110.02849 * 238.57461 * 15 11 10 47 47 H 1.09004 * 110.02736 * 359.97438 * 15 11 10 48 48 H 1.09001 * 110.66111 * 79.14837 * 18 5 4 49 49 H 1.08994 * 110.66432 * 202.27327 * 18 5 4 50 50 H 0.97001 * 120.00006 * 24.99595 * 21 19 2 51 51 H 0.97001 * 119.99530 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0605 1.4351 0.0000 4 6 2.0650 -0.7682 1.2228 5 7 2.8278 -1.9217 0.7102 6 6 3.0626 -3.0867 1.3457 7 8 2.6244 -3.2675 2.4652 8 6 3.8504 -4.1429 0.6825 9 6 4.1770 -5.3691 1.1941 10 6 4.9261 -5.9774 0.1624 11 6 5.5407 -7.3531 0.1864 12 6 4.6565 -8.3127 1.0094 13 6 5.6701 -9.2218 1.7491 14 6 6.8111 -8.2390 2.1113 15 6 6.9103 -7.3066 0.8864 16 7 4.9861 -5.1156 -0.8107 17 8 4.3982 -4.0929 -0.5464 18 6 3.2837 -1.5375 -0.6457 19 6 2.0671 -0.7711 -1.2279 20 1 1.3176 -1.4667 -1.6050 21 7 2.4907 0.1574 -2.2789 22 6 2.5088 -0.2504 -3.5861 23 1 2.2112 -1.2565 -3.8421 24 6 2.9097 0.6295 -4.5821 25 7 3.2719 1.8558 -4.2701 26 14 2.9337 0.0736 -6.3653 27 1 1.6165 0.3570 -6.9900 28 1 3.9970 0.8066 -7.0980 29 1 3.2063 -1.3849 -6.4255 30 1 -0.3633 0.5029 -0.8962 31 1 -0.3633 -1.0277 0.0125 32 1 -0.3633 0.5246 0.8836 33 1 1.6944 1.9578 0.8837 34 1 3.1504 1.4195 0.0126 35 1 1.7149 1.9504 -0.8961 36 1 2.7182 -0.1227 1.8101 37 1 1.2335 -1.1159 1.8358 38 1 3.9203 -5.7775 2.1604 39 1 5.6537 -7.7291 -0.8304 40 1 4.0517 -7.7552 1.7247 41 1 4.0211 -8.9051 0.3511 42 1 6.0338 -10.0099 1.0898 43 1 5.2266 -9.6474 2.6493 44 1 7.7472 -8.7781 2.2570 45 1 6.5548 -7.6693 3.0046 46 1 7.6877 -7.6606 0.2094 47 1 7.1306 -6.2887 1.2083 48 1 4.1554 -0.8856 -0.5881 49 1 3.5027 -2.4225 -1.2430 50 1 2.7584 1.0609 -2.0490 51 1 3.5524 2.4705 -4.9661 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996622859.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:24 Heat of formation + Delta-G solvation = 18.534963 kcal Electronic energy + Delta-G solvation = -31350.117717 eV Core-core repulsion = 27252.074673 eV Total energy + Delta-G solvation = -4098.043044 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.14161 -41.38167 -39.49480 -39.32976 -35.98559 -35.10788 -34.67849 -33.09052 -32.64457 -29.71264 -29.65833 -29.24919 -28.27208 -27.93534 -25.82577 -24.69003 -24.40231 -23.00046 -21.87721 -21.43590 -20.32046 -19.95812 -19.23775 -18.89479 -18.62592 -17.61871 -17.18080 -17.08556 -16.44928 -16.31395 -16.08173 -15.69121 -15.42059 -15.24487 -14.82643 -14.62357 -14.56121 -14.26033 -14.19887 -14.11086 -13.38498 -13.27714 -13.01444 -12.99023 -12.86589 -12.84228 -12.70918 -12.51987 -12.40844 -12.09246 -12.06838 -12.02631 -11.94304 -11.92212 -11.58794 -11.52572 -11.51605 -11.45892 -11.33176 -11.08502 -10.94302 -10.89953 -9.92436 -9.00288 -7.94162 -5.22133 -0.36502 0.94133 1.37070 1.48878 1.49669 1.57555 1.77580 1.96190 2.56724 2.86422 3.09918 3.36981 3.47865 3.66616 3.68211 3.74603 3.79933 3.88974 3.93431 4.00374 4.10173 4.30114 4.31314 4.43105 4.45751 4.48630 4.51102 4.57335 4.64547 4.68920 4.77282 4.80725 4.81889 4.85257 4.87156 4.93322 4.94423 5.04559 5.07361 5.11295 5.18972 5.25485 5.26978 5.30708 5.33393 5.43852 5.48011 5.51243 5.57012 6.18149 6.28363 6.63431 7.00088 7.37017 8.08604 8.34513 9.28573 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011214 B = 0.002933 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2496.235147 B = 9543.741130 C =11485.292330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.080 4.080 3 C -0.130 4.130 4 C 0.121 3.879 5 N -0.599 5.599 6 C 0.620 3.380 7 O -0.543 6.543 8 C -0.091 4.091 9 C -0.139 4.139 10 C 0.029 3.971 11 C -0.018 4.018 12 C -0.118 4.118 13 C -0.118 4.118 14 C -0.122 4.122 15 C -0.115 4.115 16 N -0.372 5.372 17 O 0.102 5.898 18 C 0.080 3.920 19 C 0.173 3.827 20 H 0.058 0.942 21 N -0.719 5.719 22 C -0.241 4.241 23 H 0.072 0.928 24 C -0.065 4.065 25 N -0.963 5.963 26 Si 0.964 3.036 27 H -0.288 1.288 28 H -0.297 1.297 29 H -0.274 1.274 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.204 0.796 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.051 0.949 48 H 0.070 0.930 49 H 0.077 0.923 50 H 0.386 0.614 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.147 -17.684 16.003 23.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.082 4.082 3 C -0.187 4.187 4 C -0.001 4.001 5 N -0.330 5.330 6 C 0.406 3.594 7 O -0.422 6.422 8 C -0.156 4.156 9 C -0.161 4.161 10 C -0.129 4.129 11 C -0.037 4.037 12 C -0.156 4.156 13 C -0.155 4.155 14 C -0.159 4.159 15 C -0.154 4.154 16 N -0.076 5.076 17 O 0.033 5.967 18 C -0.046 4.046 19 C 0.062 3.938 20 H 0.076 0.924 21 N -0.361 5.361 22 C -0.373 4.373 23 H 0.090 0.910 24 C -0.258 4.258 25 N -0.613 5.613 26 Si 0.793 3.207 27 H -0.215 1.215 28 H -0.223 1.223 29 H -0.199 1.199 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.221 0.779 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.070 0.930 48 H 0.089 0.911 49 H 0.095 0.905 50 H 0.222 0.778 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.464 -17.909 15.252 23.652 hybrid contribution 0.120 0.442 -0.828 0.946 sum 2.584 -17.466 14.424 22.799 Atomic orbital electron populations 1.21771 0.92290 1.01931 1.02453 1.21687 0.97208 0.95922 0.93357 1.21692 1.00439 0.94355 1.02256 1.22366 0.96076 0.85580 0.96036 1.48648 1.51712 1.14270 1.18371 1.16172 0.79347 0.79710 0.84152 1.90820 1.53170 1.79866 1.18380 1.24202 1.04261 0.99117 0.88029 1.23035 0.98966 0.91638 1.02458 1.24096 0.99836 0.99350 0.89599 1.20436 0.95599 0.85648 1.02054 1.22543 0.97661 0.96685 0.98736 1.22499 0.95152 0.97253 1.00633 1.22380 0.99754 0.96928 0.96847 1.22200 0.94878 1.00206 0.98072 1.73779 1.14034 0.95044 1.24716 1.85138 1.50419 1.31448 1.29689 1.23679 0.99921 1.00165 0.80801 1.21422 0.92875 0.91309 0.88211 0.92353 1.42665 1.78742 1.12778 1.01900 1.19572 1.36017 0.96936 0.84780 0.90984 1.25405 1.02717 0.96225 1.01475 1.69778 1.52610 1.06038 1.32901 0.85289 0.76837 0.77513 0.81023 1.21477 1.22346 1.19904 0.93289 0.92565 0.90254 0.90078 0.93328 0.93145 0.89760 0.89101 0.77949 0.89094 0.90673 0.90392 0.90472 0.89910 0.90175 0.91350 0.90330 0.93029 0.91147 0.90500 0.77772 0.93983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 8.22 71.98 0.59 -2.72 16 2 C -0.08 -2.36 0.95 -51.29 -0.05 -2.41 16 3 C -0.13 -3.86 7.04 71.98 0.51 -3.35 16 4 C 0.12 3.25 6.29 86.53 0.54 3.79 16 5 N -0.60 -18.43 3.29 -812.84 -2.68 -21.11 16 6 C 0.62 19.40 7.89 86.69 0.68 20.08 16 7 O -0.54 -18.30 17.25 -3.98 -0.07 -18.37 16 8 C -0.09 -2.68 7.10 24.38 0.17 -2.50 16 9 C -0.14 -3.35 9.88 22.68 0.22 -3.13 16 10 C 0.03 0.72 6.01 43.55 0.26 0.98 16 11 C -0.02 -0.32 3.43 -10.82 -0.04 -0.35 16 12 C -0.12 -1.53 6.32 31.69 0.20 -1.33 16 13 C -0.12 -1.12 6.91 31.91 0.22 -0.90 16 14 C -0.12 -1.33 6.83 31.67 0.22 -1.11 16 15 C -0.12 -1.76 6.45 31.32 0.20 -1.55 16 16 N -0.37 -11.57 12.04 -48.86 -0.59 -12.16 16 17 O 0.10 3.32 8.44 65.81 0.56 3.88 16 18 C 0.08 2.80 6.43 86.80 0.56 3.35 16 19 C 0.17 6.45 3.16 46.27 0.15 6.59 16 20 H 0.06 2.28 7.82 -2.39 -0.02 2.26 16 21 N -0.72 -33.69 4.97 -316.91 -1.57 -35.27 16 22 C -0.24 -12.82 9.96 84.03 0.84 -11.98 16 23 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 24 C -0.07 -3.63 5.50 84.86 0.47 -3.16 16 25 N -0.96 -56.66 13.06 21.65 0.28 -56.38 16 26 Si 0.96 45.46 29.55 68.60 2.03 47.48 16 27 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 28 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 29 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 30 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.05 1.52 8.00 -2.38 -0.02 1.50 16 35 H 0.05 1.79 6.90 -2.39 -0.02 1.78 16 36 H 0.08 2.07 7.68 -2.39 -0.02 2.05 16 37 H 0.09 2.25 7.59 -2.39 -0.02 2.24 16 38 H 0.20 3.79 7.29 -2.91 -0.02 3.77 16 39 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.07 0.98 6.26 -2.39 -0.01 0.96 16 41 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 46 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.05 0.95 7.67 -2.39 -0.02 0.93 16 48 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 49 H 0.08 2.83 5.56 -2.39 -0.01 2.82 16 50 H 0.39 18.97 5.13 -92.71 -0.48 18.50 16 51 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -64.33 402.03 4.17 -60.16 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: 0.46 Total: 31.45 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 5.75 Total: 0.30 kcal Atomic # 7 Polarization: -120.36 SS G_CDS: -4.55 Total: -124.91 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: 0.49 Total: -14.49 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -64.33 4.17 -60.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996622859.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.699 kcal (2) G-P(sol) polarization free energy of solvation -64.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds