Wall clock time and date at job start Wed Apr 1 2020 04:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30016 * 127.33656 * 2 1 4 4 O 1.20654 * 112.30547 * 179.97438 * 3 2 1 5 5 C 1.33498 * 113.15719 * 359.71713 * 4 3 2 6 6 C 1.50693 * 126.83107 * 180.31000 * 5 4 3 7 7 C 1.52992 * 117.50285 * 8.91536 * 6 5 4 8 8 C 1.52991 * 117.49892 * 300.25193 * 6 5 4 9 9 C 1.37369 * 106.33575 * 0.44788 * 5 4 3 10 10 C 1.47398 * 128.56206 * 179.85134 * 9 5 4 11 11 O 1.21602 * 120.00338 * 269.71191 * 10 9 5 12 12 N 1.34786 * 119.99443 * 89.70374 * 10 9 5 13 13 C 1.46498 * 119.99457 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.46924 * 35.01074 * 13 12 10 15 15 C 1.52995 * 109.47668 * 275.00163 * 13 12 10 16 16 C 1.53005 * 109.46642 * 155.00265 * 13 12 10 17 17 C 1.53040 * 109.45856 * 179.97438 * 16 13 12 18 18 C 1.53195 * 109.31169 * 181.38676 * 17 16 13 19 19 N 1.46928 * 108.77547 * 305.37044 * 18 17 16 20 20 C 1.36946 * 120.62648 * 233.58541 * 19 18 17 21 21 H 1.08001 * 119.99879 * 27.80702 * 20 19 18 22 22 C 1.38814 * 119.99719 * 207.80443 * 20 19 18 23 23 N 1.31620 * 119.99709 * 25.84717 * 22 20 19 24 24 Si 1.86797 * 119.99712 * 205.56717 * 22 20 19 25 25 H 1.48493 * 109.47196 * 60.00574 * 24 22 20 26 26 H 1.48500 * 109.46719 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47268 * 299.99796 * 24 22 20 28 28 C 1.46924 * 118.74378 * 53.85512 * 19 18 17 29 29 C 1.53039 * 109.46228 * 300.07292 * 16 13 12 30 30 H 1.08999 * 109.47218 * 270.04451 * 1 2 3 31 31 H 1.09001 * 109.46562 * 30.04768 * 1 2 3 32 32 H 1.08999 * 109.46744 * 150.04495 * 1 2 3 33 33 H 1.09004 * 115.55021 * 154.58560 * 6 5 4 34 34 H 1.09004 * 117.49822 * 0.02562 * 7 6 5 35 35 H 1.08997 * 117.50260 * 145.01808 * 7 6 5 36 36 H 1.09004 * 117.50292 * 214.98343 * 8 6 5 37 37 H 1.09004 * 117.50218 * 359.97438 * 8 6 5 38 38 H 0.97000 * 119.99723 * 0.02562 * 12 10 9 39 39 H 1.09006 * 109.46539 * 60.00359 * 15 13 12 40 40 H 1.08999 * 109.47501 * 180.02562 * 15 13 12 41 41 H 1.09001 * 109.47221 * 300.00688 * 15 13 12 42 42 H 1.09003 * 109.44955 * 60.03966 * 16 13 12 43 43 H 1.09006 * 109.49747 * 61.43915 * 17 16 13 44 44 H 1.08994 * 109.52481 * 301.35533 * 17 16 13 45 45 H 1.08992 * 109.58544 * 185.58164 * 18 17 16 46 46 H 1.08997 * 109.58655 * 65.15597 * 18 17 16 47 47 H 0.96992 * 120.00366 * 4.05609 * 23 22 20 48 48 H 1.09007 * 109.58117 * 65.92823 * 28 19 18 49 49 H 1.08997 * 109.58707 * 186.35174 * 28 19 18 50 50 H 1.09004 * 109.49499 * 298.56357 * 29 16 13 51 51 H 1.08994 * 109.49949 * 58.62568 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6495 -0.6007 0.0070 6 6 4.9712 -1.3245 0.0159 7 6 6.2339 -0.4870 0.2283 8 6 5.9244 -1.0691 -1.1532 9 6 2.3992 -1.1696 0.0007 10 6 2.0401 -2.5992 0.0009 11 8 1.8929 -3.1893 -1.0521 12 7 1.8751 -3.2523 1.1683 13 6 1.5177 -4.6730 1.1685 14 1 2.0013 -5.1694 0.3272 15 6 -0.0002 -4.8172 1.0420 16 6 1.9838 -5.3159 2.4764 17 6 1.6098 -6.7999 2.4767 18 6 2.0470 -7.4323 3.8017 19 7 3.4791 -7.1708 4.0008 20 6 4.3483 -8.1996 4.2482 21 1 4.1329 -9.1901 3.8755 22 6 5.5064 -7.9693 4.9781 23 7 5.5537 -6.9770 5.8415 24 14 6.9950 -9.0726 4.7405 25 1 7.4424 -9.0025 3.3264 26 1 8.0938 -8.6197 5.6309 27 1 6.6319 -10.4729 5.0761 28 6 3.9598 -5.7840 3.9352 29 6 3.5019 -5.1701 2.6035 30 1 -0.3633 0.0008 1.0276 31 1 -0.3632 0.8896 -0.5146 32 1 -0.3633 -0.8904 -0.5131 33 1 4.9551 -2.3276 0.4422 34 1 6.1085 0.5875 0.3619 35 1 7.0485 -0.9391 0.7939 36 1 6.5357 -1.9040 -1.4960 37 1 5.5953 -0.3779 -1.9292 38 1 1.9923 -2.7815 2.0082 39 1 -0.3322 -4.3592 0.1102 40 1 -0.2661 -5.8743 1.0426 41 1 -0.4837 -4.3208 1.8834 42 1 1.4996 -4.8197 3.3175 43 1 2.1130 -7.3021 1.6503 44 1 0.5308 -6.9036 2.3625 45 1 1.8732 -8.5078 3.7682 46 1 1.4781 -6.9935 4.6213 47 1 4.7617 -6.4435 6.0110 48 1 3.5436 -5.2134 4.7656 49 1 5.0483 -5.7716 3.9899 50 1 3.9877 -5.6873 1.7761 51 1 3.7692 -4.1137 2.5793 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997228945.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:34 Heat of formation + Delta-G solvation = 55.556954 kcal Electronic energy + Delta-G solvation = -31589.998525 eV Core-core repulsion = 27493.560875 eV Total energy + Delta-G solvation = -4096.437650 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.11697 -39.99014 -38.13061 -37.67850 -35.55835 -34.81461 -33.14969 -32.05264 -30.85614 -30.40930 -29.10346 -28.71416 -25.67383 -24.94492 -23.85987 -22.92548 -22.70269 -22.23433 -20.98531 -20.55767 -19.82057 -19.23733 -18.17184 -17.88886 -17.38470 -16.77510 -16.29685 -15.99759 -14.94674 -14.76832 -14.51620 -14.21803 -13.83068 -13.71212 -13.65980 -13.56401 -13.52309 -13.48609 -13.23450 -13.19776 -12.59463 -12.47377 -12.33103 -11.92455 -11.82516 -11.69322 -11.58460 -11.47949 -11.42423 -10.84921 -10.79523 -10.71741 -10.45725 -10.38868 -10.28687 -10.12740 -10.06931 -9.93950 -9.76805 -9.42470 -9.31382 -9.10938 -8.37684 -6.89437 -6.11207 -3.24154 1.00237 1.65036 2.27732 2.50066 3.13132 3.42789 3.47927 3.50971 3.68971 3.81110 3.90746 4.34594 4.45319 4.53412 4.57567 4.65252 4.83974 4.94002 5.07567 5.12963 5.13976 5.16026 5.27008 5.28484 5.30526 5.31902 5.43347 5.48441 5.54742 5.60096 5.65404 5.69358 5.72088 5.75210 5.83648 5.92364 5.99743 6.12854 6.15389 6.28111 6.37350 6.46024 6.49374 6.59772 6.69564 6.79924 7.03047 7.15106 7.36386 7.95943 7.99322 8.03673 8.55704 9.09943 9.83174 10.27940 11.19015 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011481 B = 0.003046 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.206232 B = 9191.522919 C =10826.139132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.055 3.945 3 N -0.356 5.356 4 O 0.096 5.904 5 C 0.056 3.944 6 C -0.098 4.098 7 C -0.160 4.160 8 C -0.155 4.155 9 C -0.246 4.246 10 C 0.601 3.399 11 O -0.526 6.526 12 N -0.707 5.707 13 C 0.144 3.856 14 H 0.088 0.912 15 C -0.163 4.163 16 C -0.084 4.084 17 C -0.125 4.125 18 C 0.148 3.852 19 N -0.599 5.599 20 C -0.351 4.351 21 H 0.055 0.945 22 C -0.024 4.024 23 N -0.916 5.916 24 Si 1.064 2.936 25 H -0.293 1.293 26 H -0.285 1.285 27 H -0.293 1.293 28 C 0.152 3.848 29 C -0.128 4.128 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.142 0.858 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.402 0.598 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.014 0.986 47 H 0.268 0.732 48 H 0.015 0.985 49 H 0.078 0.922 50 H 0.059 0.941 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.950 14.032 -11.311 19.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 N -0.063 5.063 4 O 0.035 5.965 5 C -0.007 4.007 6 C -0.117 4.117 7 C -0.197 4.197 8 C -0.192 4.192 9 C -0.254 4.254 10 C 0.385 3.615 11 O -0.402 6.402 12 N -0.358 5.358 13 C 0.041 3.959 14 H 0.106 0.894 15 C -0.221 4.221 16 C -0.103 4.103 17 C -0.165 4.165 18 C 0.022 3.978 19 N -0.323 5.323 20 C -0.480 4.480 21 H 0.073 0.927 22 C -0.226 4.226 23 N -0.556 5.556 24 Si 0.893 3.107 25 H -0.221 1.221 26 H -0.211 1.211 27 H -0.220 1.220 28 C 0.026 3.974 29 C -0.168 4.168 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.159 0.841 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.119 0.881 38 H 0.236 0.764 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.032 0.968 47 H 0.079 0.921 48 H 0.033 0.967 49 H 0.096 0.904 50 H 0.077 0.923 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.648 14.624 -11.598 19.501 hybrid contribution -1.794 -0.321 -0.031 1.823 sum -7.442 14.303 -11.628 19.879 Atomic orbital electron populations 1.20229 0.85119 1.04300 1.03842 1.24721 0.98535 0.86486 1.00986 1.73622 0.89040 1.23245 1.20347 1.84500 1.21514 1.22417 1.68106 1.23575 0.95593 0.83359 0.98202 1.20570 0.83954 0.99709 1.07437 1.23131 0.96871 1.00172 0.99496 1.23132 1.00472 1.03931 0.91680 1.21851 0.92469 0.95440 1.15610 1.16820 0.76738 0.83728 0.84211 1.90820 1.50383 1.67703 1.31311 1.46100 1.69936 1.11741 1.07981 1.21211 0.95213 0.79510 0.99998 0.89354 1.22213 0.95457 1.02685 1.01731 1.21327 0.97311 0.96723 0.94959 1.22073 0.99396 0.94156 1.00883 1.20881 0.86147 0.98008 0.92804 1.44130 1.01850 1.02903 1.83422 1.19970 1.04321 0.91113 1.32560 0.92680 1.25831 1.01764 1.01734 0.93286 1.70798 1.33486 1.22346 1.28937 0.83536 0.76342 0.74938 0.75844 1.22058 1.21097 1.21988 1.21009 0.99785 0.84856 0.91770 1.22177 0.94064 0.99168 1.01351 0.89556 0.89904 0.89724 0.84068 0.87633 0.87026 0.87069 0.88080 0.76387 0.92555 0.90948 0.92553 0.91450 0.92009 0.92479 0.92623 0.96776 0.92100 0.96742 0.90357 0.92257 0.93416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.49 36.01 0.38 -0.28 16 2 C 0.05 0.64 7.59 -79.77 -0.61 0.03 16 3 N -0.36 -4.45 12.01 34.78 0.42 -4.04 16 4 O 0.10 1.14 10.86 18.64 0.20 1.34 16 5 C 0.06 0.64 7.00 -34.63 -0.24 0.40 16 6 C -0.10 -0.96 6.14 -91.78 -0.56 -1.52 16 7 C -0.16 -1.24 10.19 -26.70 -0.27 -1.51 16 8 C -0.15 -1.26 10.24 -26.70 -0.27 -1.54 16 9 C -0.25 -3.06 6.24 -102.89 -0.64 -3.70 16 10 C 0.60 8.14 7.60 -12.53 -0.10 8.04 16 11 O -0.53 -8.92 16.77 5.28 0.09 -8.83 16 12 N -0.71 -8.45 4.36 -54.89 -0.24 -8.68 16 13 C 0.14 1.87 2.16 -67.93 -0.15 1.72 16 14 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 15 C -0.16 -1.85 9.13 37.16 0.34 -1.51 16 16 C -0.08 -1.23 1.78 -90.58 -0.16 -1.39 16 17 C -0.13 -2.00 5.04 -26.61 -0.13 -2.13 16 18 C 0.15 2.96 6.51 -3.71 -0.02 2.94 16 19 N -0.60 -14.45 2.85 -172.05 -0.49 -14.94 16 20 C -0.35 -9.59 9.49 -15.05 -0.14 -9.73 16 21 H 0.06 1.52 7.95 -52.49 -0.42 1.11 16 22 C -0.02 -0.67 4.66 -17.43 -0.08 -0.75 16 23 N -0.92 -26.83 12.46 55.49 0.69 -26.14 16 24 Si 1.06 24.84 29.99 -169.99 -5.10 19.74 16 25 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 28 C 0.15 3.35 4.72 -3.49 -0.02 3.34 16 29 C -0.13 -2.20 5.24 -26.39 -0.14 -2.34 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.14 1.44 8.14 -51.93 -0.42 1.01 16 34 H 0.11 0.77 8.02 -51.93 -0.42 0.35 16 35 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.40 4.22 8.37 -40.82 -0.34 3.88 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.79 6.40 -51.93 -0.33 0.46 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.06 0.77 6.36 -51.93 -0.33 0.44 16 45 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 46 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 47 H 0.27 7.90 6.69 -40.82 -0.27 7.62 16 48 H 0.01 0.33 7.87 -51.93 -0.41 -0.08 16 49 H 0.08 1.98 6.31 -51.93 -0.33 1.65 16 50 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 51 H 0.05 0.72 7.40 -51.93 -0.38 0.33 16 LS Contribution 411.57 15.07 6.20 6.20 Total: -1.00 -32.35 411.57 -9.38 -41.73 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -8.33 Total: 3.55 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -2.82 Total: -9.93 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.38 Total: -53.81 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: 0.29 Total: -7.48 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.10 Total: 19.74 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.35 -9.38 -41.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997228945.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.287 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds