Wall clock time and date at job start Wed Apr 1 2020 04:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30016 * 127.33656 * 2 1 4 4 O 1.20654 * 112.30547 * 179.97438 * 3 2 1 5 5 C 1.33498 * 113.15719 * 359.71713 * 4 3 2 6 6 C 1.50693 * 126.83107 * 180.31000 * 5 4 3 7 7 C 1.52992 * 117.50285 * 8.91536 * 6 5 4 8 8 C 1.52991 * 117.49892 * 300.25193 * 6 5 4 9 9 C 1.37369 * 106.33575 * 0.44788 * 5 4 3 10 10 C 1.47398 * 128.56206 * 179.85134 * 9 5 4 11 11 O 1.21602 * 120.00338 * 269.71191 * 10 9 5 12 12 N 1.34786 * 119.99443 * 89.70374 * 10 9 5 13 13 C 1.46498 * 119.99457 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.46924 * 35.01074 * 13 12 10 15 15 C 1.52995 * 109.47668 * 275.00163 * 13 12 10 16 16 C 1.53005 * 109.46642 * 155.00265 * 13 12 10 17 17 C 1.53040 * 109.45856 * 179.97438 * 16 13 12 18 18 C 1.53195 * 109.31169 * 181.38676 * 17 16 13 19 19 N 1.46928 * 108.77547 * 305.37044 * 18 17 16 20 20 C 1.36946 * 120.62648 * 233.58541 * 19 18 17 21 21 H 1.08001 * 119.99879 * 27.80702 * 20 19 18 22 22 C 1.38814 * 119.99719 * 207.80443 * 20 19 18 23 23 N 1.31620 * 119.99709 * 25.84717 * 22 20 19 24 24 Si 1.86797 * 119.99712 * 205.56717 * 22 20 19 25 25 H 1.48493 * 109.47196 * 60.00574 * 24 22 20 26 26 H 1.48500 * 109.46719 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47268 * 299.99796 * 24 22 20 28 28 C 1.46924 * 118.74378 * 53.85512 * 19 18 17 29 29 C 1.53039 * 109.46228 * 300.07292 * 16 13 12 30 30 H 1.08999 * 109.47218 * 270.04451 * 1 2 3 31 31 H 1.09001 * 109.46562 * 30.04768 * 1 2 3 32 32 H 1.08999 * 109.46744 * 150.04495 * 1 2 3 33 33 H 1.09004 * 115.55021 * 154.58560 * 6 5 4 34 34 H 1.09004 * 117.49822 * 0.02562 * 7 6 5 35 35 H 1.08997 * 117.50260 * 145.01808 * 7 6 5 36 36 H 1.09004 * 117.50292 * 214.98343 * 8 6 5 37 37 H 1.09004 * 117.50218 * 359.97438 * 8 6 5 38 38 H 0.97000 * 119.99723 * 0.02562 * 12 10 9 39 39 H 1.09006 * 109.46539 * 60.00359 * 15 13 12 40 40 H 1.08999 * 109.47501 * 180.02562 * 15 13 12 41 41 H 1.09001 * 109.47221 * 300.00688 * 15 13 12 42 42 H 1.09003 * 109.44955 * 60.03966 * 16 13 12 43 43 H 1.09006 * 109.49747 * 61.43915 * 17 16 13 44 44 H 1.08994 * 109.52481 * 301.35533 * 17 16 13 45 45 H 1.08992 * 109.58544 * 185.58164 * 18 17 16 46 46 H 1.08997 * 109.58655 * 65.15597 * 18 17 16 47 47 H 0.96992 * 120.00366 * 4.05609 * 23 22 20 48 48 H 1.09007 * 109.58117 * 65.92823 * 28 19 18 49 49 H 1.08997 * 109.58707 * 186.35174 * 28 19 18 50 50 H 1.09004 * 109.49499 * 298.56357 * 29 16 13 51 51 H 1.08994 * 109.49949 * 58.62568 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6495 -0.6007 0.0070 6 6 4.9712 -1.3245 0.0159 7 6 6.2339 -0.4870 0.2283 8 6 5.9244 -1.0691 -1.1532 9 6 2.3992 -1.1696 0.0007 10 6 2.0401 -2.5992 0.0009 11 8 1.8929 -3.1893 -1.0521 12 7 1.8751 -3.2523 1.1683 13 6 1.5177 -4.6730 1.1685 14 1 2.0013 -5.1694 0.3272 15 6 -0.0002 -4.8172 1.0420 16 6 1.9838 -5.3159 2.4764 17 6 1.6098 -6.7999 2.4767 18 6 2.0470 -7.4323 3.8017 19 7 3.4791 -7.1708 4.0008 20 6 4.3483 -8.1996 4.2482 21 1 4.1329 -9.1901 3.8755 22 6 5.5064 -7.9693 4.9781 23 7 5.5537 -6.9770 5.8415 24 14 6.9950 -9.0726 4.7405 25 1 7.4424 -9.0025 3.3264 26 1 8.0938 -8.6197 5.6309 27 1 6.6319 -10.4729 5.0761 28 6 3.9598 -5.7840 3.9352 29 6 3.5019 -5.1701 2.6035 30 1 -0.3633 0.0008 1.0276 31 1 -0.3632 0.8896 -0.5146 32 1 -0.3633 -0.8904 -0.5131 33 1 4.9551 -2.3276 0.4422 34 1 6.1085 0.5875 0.3619 35 1 7.0485 -0.9391 0.7939 36 1 6.5357 -1.9040 -1.4960 37 1 5.5953 -0.3779 -1.9292 38 1 1.9923 -2.7815 2.0082 39 1 -0.3322 -4.3592 0.1102 40 1 -0.2661 -5.8743 1.0426 41 1 -0.4837 -4.3208 1.8834 42 1 1.4996 -4.8197 3.3175 43 1 2.1130 -7.3021 1.6503 44 1 0.5308 -6.9036 2.3625 45 1 1.8732 -8.5078 3.7682 46 1 1.4781 -6.9935 4.6213 47 1 4.7617 -6.4435 6.0110 48 1 3.5436 -5.2134 4.7656 49 1 5.0483 -5.7716 3.9899 50 1 3.9877 -5.6873 1.7761 51 1 3.7692 -4.1137 2.5793 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997228945.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:33 Heat of formation + Delta-G solvation = 37.659718 kcal Electronic energy + Delta-G solvation = -31590.774607 eV Core-core repulsion = 27493.560875 eV Total energy + Delta-G solvation = -4097.213732 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -46.00938 -41.12116 -39.55390 -38.40139 -37.01881 -35.69378 -34.69945 -33.11189 -32.25473 -31.94323 -30.21927 -29.76918 -27.14853 -26.20833 -24.69017 -24.34876 -23.77424 -23.37290 -22.24818 -21.65803 -20.91930 -20.51945 -19.47064 -19.02329 -18.78581 -17.65807 -17.35557 -16.87034 -16.36091 -16.03369 -15.90945 -15.54982 -15.38605 -15.09835 -14.88945 -14.77412 -14.50352 -14.40075 -14.32810 -14.03805 -13.99187 -13.72391 -13.32285 -13.11605 -12.98145 -12.79709 -12.60143 -12.53600 -12.47951 -12.32884 -12.22166 -12.01373 -11.91283 -11.76116 -11.57960 -11.49551 -11.47821 -11.19608 -11.07632 -11.02097 -10.43633 -10.28591 -10.21263 -8.89513 -8.25503 -5.37192 0.11590 0.76882 1.23728 1.58358 1.59706 1.65054 1.84122 2.14767 2.65896 2.72801 3.01797 3.08565 3.22004 3.52579 3.55443 3.61426 3.69657 3.83327 3.87583 3.91364 3.96281 4.12402 4.33608 4.35964 4.38902 4.43767 4.47441 4.50548 4.55032 4.60149 4.65432 4.69757 4.71492 4.80398 4.86883 4.90592 4.96931 4.99138 5.02570 5.04685 5.10864 5.14822 5.16043 5.25038 5.26150 5.35112 5.39854 5.58462 5.86002 6.35606 6.41354 7.01138 7.07248 7.09281 7.80890 8.24929 9.01102 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011481 B = 0.003046 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.206232 B = 9191.522919 C =10826.139132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.057 3.943 3 N -0.373 5.373 4 O 0.091 5.909 5 C 0.064 3.936 6 C -0.120 4.120 7 C -0.145 4.145 8 C -0.150 4.150 9 C -0.269 4.269 10 C 0.610 3.390 11 O -0.563 6.563 12 N -0.696 5.696 13 C 0.155 3.845 14 H 0.069 0.931 15 C -0.157 4.157 16 C -0.073 4.073 17 C -0.114 4.114 18 C 0.142 3.858 19 N -0.619 5.619 20 C -0.358 4.358 21 H 0.047 0.953 22 C -0.074 4.074 23 N -0.941 5.941 24 Si 1.111 2.889 25 H -0.281 1.281 26 H -0.291 1.291 27 H -0.277 1.277 28 C 0.158 3.842 29 C -0.114 4.114 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.135 0.865 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.102 0.898 38 H 0.411 0.589 39 H 0.051 0.949 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.050 0.950 44 H 0.093 0.907 45 H 0.047 0.953 46 H 0.018 0.982 47 H 0.255 0.745 48 H 0.007 0.993 49 H 0.040 0.960 50 H 0.042 0.958 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.908 14.649 -12.025 20.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 N -0.082 5.082 4 O 0.032 5.968 5 C 0.001 3.999 6 C -0.139 4.139 7 C -0.182 4.182 8 C -0.188 4.188 9 C -0.276 4.276 10 C 0.395 3.605 11 O -0.442 6.442 12 N -0.347 5.347 13 C 0.051 3.949 14 H 0.087 0.913 15 C -0.215 4.215 16 C -0.092 4.092 17 C -0.153 4.153 18 C 0.017 3.983 19 N -0.344 5.344 20 C -0.487 4.487 21 H 0.065 0.935 22 C -0.270 4.270 23 N -0.583 5.583 24 Si 0.936 3.064 25 H -0.208 1.208 26 H -0.217 1.217 27 H -0.203 1.203 28 C 0.032 3.968 29 C -0.153 4.153 30 H 0.123 0.877 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.153 0.847 34 H 0.129 0.871 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.121 0.879 38 H 0.247 0.753 39 H 0.070 0.930 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.069 0.931 44 H 0.111 0.889 45 H 0.066 0.934 46 H 0.036 0.964 47 H 0.065 0.935 48 H 0.025 0.975 49 H 0.058 0.942 50 H 0.061 0.939 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.630 15.252 -12.307 20.689 hybrid contribution -1.522 -0.522 0.212 1.623 sum -8.152 14.729 -12.095 20.729 Atomic orbital electron populations 1.20380 0.83069 1.04866 1.05195 1.25202 0.99811 0.85814 0.99671 1.73610 0.89293 1.23753 1.21592 1.84482 1.21502 1.22487 1.68332 1.23863 0.96059 0.83256 0.96731 1.20657 0.84093 0.99762 1.09376 1.23222 0.95651 1.00271 0.99069 1.23231 0.99559 1.04263 0.91702 1.21815 0.93226 0.95066 1.17484 1.16855 0.75885 0.83975 0.83812 1.90801 1.52203 1.68597 1.32614 1.45990 1.69209 1.11331 1.08130 1.20997 0.96457 0.79595 0.97884 0.91313 1.22165 0.93631 1.03460 1.02241 1.21205 0.95198 0.96349 0.96476 1.21941 1.01379 0.94301 0.97715 1.21052 0.83999 0.98122 0.95118 1.44392 1.03397 1.02946 1.83703 1.20204 1.05164 0.91756 1.31619 0.93514 1.27093 1.04422 1.02569 0.92963 1.70911 1.32870 1.23653 1.30821 0.82897 0.73254 0.74113 0.76146 1.20757 1.21681 1.20339 1.20876 0.97466 0.84387 0.94064 1.21980 0.95999 0.99752 0.97576 0.87703 0.88764 0.89682 0.84701 0.87066 0.85904 0.86113 0.87928 0.75254 0.92997 0.90109 0.90870 0.90127 0.93142 0.88910 0.93444 0.96359 0.93546 0.97479 0.94173 0.93870 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.49 71.24 0.75 -0.42 16 2 C 0.06 1.26 7.59 45.16 0.34 1.60 16 3 N -0.37 -8.98 12.01 -44.78 -0.54 -9.52 16 4 O 0.09 2.09 10.86 76.95 0.84 2.92 16 5 C 0.06 1.43 7.00 25.48 0.18 1.61 16 6 C -0.12 -2.25 6.14 -11.55 -0.07 -2.32 16 7 C -0.15 -2.04 10.19 30.62 0.31 -1.73 16 8 C -0.15 -2.28 10.24 30.61 0.31 -1.96 16 9 C -0.27 -6.42 6.24 -18.74 -0.12 -6.53 16 10 C 0.61 15.86 7.60 86.65 0.66 16.52 16 11 O -0.56 -18.79 16.77 -4.04 -0.07 -18.85 16 12 N -0.70 -15.37 4.36 -445.82 -1.94 -17.31 16 13 C 0.15 3.68 2.16 44.99 0.10 3.78 16 14 H 0.07 1.98 7.58 -2.39 -0.02 1.96 16 15 C -0.16 -3.08 9.13 71.98 0.66 -2.43 16 16 C -0.07 -1.99 1.78 -10.77 -0.02 -2.01 16 17 C -0.11 -3.41 5.04 30.67 0.15 -3.25 16 18 C 0.14 5.59 6.51 86.36 0.56 6.15 16 19 N -0.62 -30.22 2.85 -698.25 -1.99 -32.20 16 20 C -0.36 -19.88 9.49 84.03 0.80 -19.08 16 21 H 0.05 2.62 7.95 -2.91 -0.02 2.60 16 22 C -0.07 -4.16 4.66 84.86 0.40 -3.77 16 23 N -0.94 -56.48 12.46 21.65 0.27 -56.21 16 24 Si 1.11 50.58 29.99 68.60 2.06 52.63 16 25 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 26 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 27 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 28 C 0.16 7.08 4.72 86.51 0.41 7.49 16 29 C -0.11 -3.84 5.24 30.82 0.16 -3.68 16 30 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.14 2.69 8.14 -2.38 -0.02 2.67 16 34 H 0.11 1.45 8.02 -2.39 -0.02 1.43 16 35 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.12 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.41 7.69 8.37 -92.71 -0.78 6.92 16 39 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.08 1.46 6.40 -2.39 -0.02 1.45 16 41 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 44 H 0.09 2.15 6.36 -2.39 -0.02 2.14 16 45 H 0.05 1.91 7.93 -2.39 -0.02 1.89 16 46 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.25 15.50 6.69 -92.71 -0.62 14.88 16 48 H 0.01 0.33 7.87 -2.38 -0.02 0.31 16 49 H 0.04 2.09 6.31 -2.39 -0.02 2.07 16 50 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 51 H 0.07 2.03 7.40 -2.39 -0.02 2.01 16 Total: -1.00 -71.67 411.57 4.52 -67.15 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.31 Total: 21.41 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 5.58 Total: -10.02 kcal Atomic # 7 Polarization: -111.04 SS G_CDS: -4.20 Total: -115.24 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: 0.77 Total: -15.93 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 2.06 Total: 52.63 kcal Total: -71.67 4.52 -67.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997228945.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.811 kcal (2) G-P(sol) polarization free energy of solvation -71.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds