Wall clock time and date at job start Wed Apr 1 2020 05:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34259 * 126.51982 * 2 1 4 4 C 1.34053 * 108.22204 * 180.26798 * 3 2 1 5 5 C 1.50702 * 125.37930 * 179.70107 * 4 3 2 6 6 C 1.53005 * 117.49619 * 8.65808 * 5 4 3 7 7 C 1.53003 * 59.99982 * 252.51432 * 6 5 4 8 8 N 1.29934 * 109.24441 * 359.73161 * 4 3 2 9 9 C 1.36066 * 108.47751 * 0.02562 * 8 4 3 10 10 C 1.47419 * 126.45007 * 179.97438 * 9 8 4 11 11 O 1.21606 * 119.99955 * 180.02562 * 10 9 8 12 12 N 1.34780 * 119.99878 * 0.02562 * 10 9 8 13 13 C 1.46500 * 119.99984 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.47065 * 35.00223 * 13 12 10 15 15 C 1.53001 * 109.47057 * 274.99800 * 13 12 10 16 16 C 1.53001 * 109.47003 * 155.00228 * 13 12 10 17 17 C 1.53041 * 109.45988 * 300.06826 * 16 13 12 18 18 C 1.53189 * 109.31425 * 178.61647 * 17 16 13 19 19 N 1.46920 * 108.77517 * 54.63211 * 18 17 16 20 20 C 1.36935 * 120.62752 * 126.41442 * 19 18 17 21 21 H 1.08004 * 119.99946 * 207.66610 * 20 19 18 22 22 C 1.38814 * 120.00466 * 27.66589 * 20 19 18 23 23 N 1.31620 * 119.99469 * 17.36277 * 22 20 19 24 24 Si 1.86796 * 120.00357 * 197.36767 * 22 20 19 25 25 H 1.48500 * 109.47309 * 89.99862 * 24 22 20 26 26 H 1.48498 * 109.47257 * 209.99558 * 24 22 20 27 27 H 1.48495 * 109.47200 * 329.99943 * 24 22 20 28 28 C 1.46921 * 118.74386 * 306.39498 * 19 18 17 29 29 C 1.53031 * 109.45869 * 180.02562 * 16 13 12 30 30 H 1.09000 * 109.47347 * 270.18611 * 1 2 3 31 31 H 1.09000 * 109.47167 * 30.18985 * 1 2 3 32 32 H 1.09002 * 109.46914 * 150.18531 * 1 2 3 33 33 H 1.08999 * 115.55466 * 154.36641 * 5 4 3 34 34 H 1.08997 * 117.49960 * 359.97438 * 6 5 4 35 35 H 1.09002 * 117.49922 * 145.02728 * 6 5 4 36 36 H 1.09008 * 117.49609 * 252.51189 * 7 6 5 37 37 H 1.08996 * 117.49713 * 107.49354 * 7 6 5 38 38 H 0.97000 * 119.99767 * 0.02562 * 12 10 9 39 39 H 1.08996 * 109.47528 * 300.00139 * 15 13 12 40 40 H 1.09011 * 109.46803 * 60.00648 * 15 13 12 41 41 H 1.09001 * 109.47051 * 179.97438 * 15 13 12 42 42 H 1.08997 * 109.46025 * 60.02377 * 16 13 12 43 43 H 1.08996 * 109.49924 * 298.56857 * 17 16 13 44 44 H 1.09005 * 109.49629 * 58.66284 * 17 16 13 45 45 H 1.09004 * 109.58218 * 294.84465 * 18 17 16 46 46 H 1.08997 * 109.58871 * 174.42624 * 18 17 16 47 47 H 0.97006 * 119.99970 * 180.02562 * 23 22 20 48 48 H 1.09003 * 109.58443 * 293.82516 * 28 19 18 49 49 H 1.08993 * 109.59132 * 173.39263 * 28 19 18 50 50 H 1.09007 * 109.50230 * 301.33356 * 29 16 13 51 51 H 1.09000 * 109.50472 * 61.43247 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0790 0.0000 4 6 3.5787 0.6581 -0.0060 5 6 4.7929 1.5508 -0.0144 6 6 4.5683 3.0507 0.1878 7 6 4.9532 2.5140 -1.1924 8 7 3.6002 -0.6410 -0.0039 9 6 2.3170 -1.0936 0.0030 10 6 1.8854 -2.5031 0.0068 11 8 0.7004 -2.7762 0.0126 12 7 2.8042 -3.4892 0.0041 13 6 2.3753 -4.8900 0.0085 14 1 1.4612 -4.9920 -0.5764 15 6 2.1127 -5.3385 1.4475 16 6 3.4731 -5.7615 -0.6050 17 6 3.7368 -5.3116 -2.0438 18 6 4.8601 -6.1634 -2.6432 19 7 4.5003 -7.5816 -2.5107 20 6 4.5009 -8.4065 -3.6037 21 1 3.8488 -9.2671 -3.6312 22 6 5.3396 -8.1368 -4.6765 23 7 6.3599 -7.3194 -4.5247 24 14 5.0201 -8.9338 -6.3354 25 1 4.1233 -8.0639 -7.1381 26 1 6.3071 -9.1148 -7.0537 27 1 4.3757 -10.2564 -6.1333 28 6 4.1401 -8.0982 -1.1833 29 6 3.0245 -7.2246 -0.6008 30 1 -0.3634 0.0033 1.0276 31 1 -0.3633 0.8883 -0.5168 32 1 -0.3633 -0.8917 -0.5110 33 1 5.6992 1.1159 0.4070 34 1 3.5425 3.3918 0.3266 35 1 5.3270 3.6029 0.7426 36 1 5.9651 2.7131 -1.5455 37 1 4.1806 2.5021 -1.9610 38 1 3.7494 -3.2714 -0.0001 39 1 3.0268 -5.2366 2.0324 40 1 1.3305 -4.7176 1.8846 41 1 1.7932 -6.3806 1.4508 42 1 4.3870 -5.6597 -0.0197 43 1 2.8302 -5.4363 -2.6359 44 1 4.0334 -4.2627 -2.0484 45 1 5.7900 -5.9707 -2.1079 46 1 4.9846 -5.9148 -3.6971 47 1 6.9459 -7.1306 -5.2744 48 1 5.0112 -8.0634 -0.5290 49 1 3.7894 -9.1262 -1.2740 50 1 2.8142 -7.5378 0.4219 51 1 2.1248 -7.3311 -1.2067 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997374287.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:19 Heat of formation + Delta-G solvation = 20.384614 kcal Electronic energy + Delta-G solvation = -30911.749418 eV Core-core repulsion = 26813.786581 eV Total energy + Delta-G solvation = -4097.962837 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.69097 -39.78853 -37.93857 -37.61020 -35.32521 -35.06553 -32.84795 -32.46417 -30.99084 -30.17521 -28.86973 -27.76951 -25.44711 -24.70153 -23.42866 -22.94999 -22.61671 -21.93182 -21.42866 -20.33480 -20.13828 -19.09466 -17.87717 -17.23291 -16.80514 -16.60187 -16.01117 -15.64788 -14.98396 -14.86158 -14.69255 -14.27193 -13.93348 -13.74326 -13.46979 -13.37456 -13.31387 -13.27064 -12.92383 -12.86933 -12.61514 -12.34593 -12.16308 -12.06672 -11.82201 -11.62364 -11.47218 -11.17273 -11.08245 -11.07201 -10.95743 -10.92343 -10.66780 -10.38624 -10.21531 -10.11747 -10.04536 -9.84319 -9.46859 -9.41257 -9.03008 -8.77066 -8.42274 -6.62554 -5.74506 -3.16288 0.87640 1.75154 2.15130 3.10132 3.18910 3.35243 3.40651 3.47469 3.48469 3.55904 4.21476 4.37101 4.43734 4.49168 4.53512 4.73655 4.92184 5.00704 5.13045 5.19179 5.19883 5.26912 5.33037 5.38284 5.43231 5.51336 5.55119 5.58312 5.63563 5.67449 5.75918 5.77439 5.86927 5.86967 6.03757 6.14019 6.17402 6.32605 6.37956 6.51438 6.63401 6.68330 6.75083 6.83660 6.89862 7.03796 7.23826 7.43472 7.64378 7.71117 7.83761 8.21289 8.49659 9.26031 9.89976 10.46671 11.33780 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011574 B = 0.002543 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.723296 B =11007.348108 C =12379.112207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.037 3.963 3 O -0.197 6.197 4 C 0.223 3.777 5 C -0.071 4.071 6 C -0.163 4.163 7 C -0.157 4.157 8 N -0.449 5.449 9 C -0.071 4.071 10 C 0.603 3.397 11 O -0.540 6.540 12 N -0.699 5.699 13 C 0.144 3.856 14 H 0.087 0.913 15 C -0.162 4.162 16 C -0.084 4.084 17 C -0.134 4.134 18 C 0.172 3.828 19 N -0.593 5.593 20 C -0.250 4.250 21 H 0.065 0.935 22 C 0.000 4.000 23 N -0.903 5.903 24 Si 0.901 3.099 25 H -0.288 1.288 26 H -0.292 1.292 27 H -0.279 1.279 28 C 0.146 3.854 29 C -0.125 4.125 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.149 0.851 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.408 0.592 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.047 0.953 45 H 0.016 0.984 46 H 0.086 0.914 47 H 0.253 0.747 48 H 0.016 0.984 49 H 0.053 0.947 50 H 0.055 0.945 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.715 20.406 12.649 24.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.020 4.020 3 O -0.085 6.085 4 C 0.015 3.985 5 C -0.090 4.090 6 C -0.201 4.201 7 C -0.195 4.195 8 N -0.178 5.178 9 C -0.191 4.191 10 C 0.388 3.612 11 O -0.418 6.418 12 N -0.348 5.348 13 C 0.040 3.960 14 H 0.105 0.895 15 C -0.220 4.220 16 C -0.103 4.103 17 C -0.173 4.173 18 C 0.046 3.954 19 N -0.315 5.315 20 C -0.380 4.380 21 H 0.083 0.917 22 C -0.198 4.198 23 N -0.548 5.548 24 Si 0.732 3.268 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.205 1.205 28 C 0.019 3.981 29 C -0.165 4.165 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.132 0.868 33 H 0.167 0.833 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.119 0.881 38 H 0.244 0.756 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.034 0.966 46 H 0.104 0.896 47 H 0.063 0.937 48 H 0.034 0.966 49 H 0.072 0.928 50 H 0.073 0.927 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.880 19.823 12.522 24.435 hybrid contribution -0.067 0.172 -0.870 0.889 sum -6.947 19.995 11.652 24.163 Atomic orbital electron populations 1.20593 0.82451 1.05450 1.04592 1.23723 0.95043 0.83229 0.99962 1.84267 1.17864 1.36363 1.69999 1.24943 0.83068 0.89549 1.00988 1.20277 0.92238 0.89429 1.07084 1.23121 1.04016 0.93100 0.99850 1.23158 1.04262 1.00420 0.91630 1.70704 1.21546 1.08662 1.16924 1.21578 0.88693 0.95797 1.13071 1.16659 0.85595 0.82460 0.76464 1.90760 1.16253 1.83228 1.51596 1.45913 1.10131 1.05967 1.72837 1.21222 0.99213 0.78902 0.96642 0.89466 1.22211 1.01607 1.01873 0.96303 1.21327 0.96637 0.94982 0.97359 1.22223 1.01722 0.98816 0.94567 1.20754 0.91368 0.82240 1.00997 1.44065 1.79690 1.05232 1.02555 1.19204 1.16315 1.08071 0.94386 0.91717 1.25028 0.95249 0.99892 0.99618 1.70042 1.14923 1.39598 1.30198 0.86300 0.77049 0.79057 0.84439 1.21513 1.21819 1.20460 1.20890 0.93901 0.95543 0.87720 1.22081 1.00440 0.94243 0.99718 0.89087 0.90242 0.86784 0.83338 0.87892 0.87121 0.86903 0.88105 0.75599 0.92622 0.92702 0.91008 0.91433 0.92758 0.93435 0.96581 0.89582 0.93724 0.96564 0.92815 0.92658 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 9.88 36.01 0.36 -0.32 16 2 C 0.04 0.44 7.44 -35.08 -0.26 0.18 16 3 O -0.20 -2.25 10.40 6.50 0.07 -2.18 16 4 C 0.22 2.56 7.80 -13.08 -0.10 2.45 16 5 C -0.07 -0.56 6.33 -91.77 -0.58 -1.14 16 6 C -0.16 -0.89 10.16 -26.73 -0.27 -1.16 16 7 C -0.16 -0.96 10.23 -26.73 -0.27 -1.23 16 8 N -0.45 -6.17 11.06 -7.65 -0.08 -6.26 16 9 C -0.07 -1.01 6.99 -83.02 -0.58 -1.59 16 10 C 0.60 9.23 7.78 -12.52 -0.10 9.14 16 11 O -0.54 -9.02 14.47 5.27 0.08 -8.95 16 12 N -0.70 -10.22 4.36 -54.88 -0.24 -10.46 16 13 C 0.14 2.14 2.16 -67.93 -0.15 1.99 16 14 H 0.09 1.44 7.58 -51.93 -0.39 1.04 16 15 C -0.16 -2.09 9.13 37.16 0.34 -1.75 16 16 C -0.08 -1.39 1.79 -90.58 -0.16 -1.55 16 17 C -0.13 -2.61 5.22 -26.61 -0.14 -2.75 16 18 C 0.17 4.16 5.31 -3.72 -0.02 4.14 16 19 N -0.59 -14.99 2.99 -172.33 -0.52 -15.50 16 20 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16 21 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 22 C 0.00 0.01 4.91 -17.43 -0.09 -0.07 16 23 N -0.90 -26.53 11.19 55.49 0.62 -25.91 16 24 Si 0.90 22.04 29.59 -169.99 -5.03 17.01 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 28 C 0.15 3.06 6.52 -3.71 -0.02 3.03 16 29 C -0.13 -2.14 5.04 -26.61 -0.13 -2.27 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.11 1.20 6.48 -51.93 -0.34 0.86 16 33 H 0.15 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.10 0.60 7.94 -51.93 -0.41 0.18 16 35 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.11 0.51 8.14 -51.92 -0.42 0.09 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.41 5.80 8.11 -40.82 -0.33 5.47 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 41 H 0.07 0.87 6.40 -51.93 -0.33 0.53 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.05 0.87 7.40 -51.93 -0.38 0.49 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.09 2.35 6.04 -51.93 -0.31 2.04 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 49 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 50 H 0.05 0.80 6.36 -51.92 -0.33 0.47 16 51 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 407.93 15.07 6.15 6.15 Total: -1.00 -32.46 407.93 -9.58 -42.03 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -8.29 Total: 4.08 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -2.33 Total: -0.01 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: -0.22 Total: -58.13 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.14 Total: -11.13 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.46 -9.58 -42.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997374287.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.418 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds