Wall clock time and date at job start Wed Apr 1 2020 05:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34259 * 126.51982 * 2 1 4 4 C 1.34053 * 108.22204 * 180.26798 * 3 2 1 5 5 C 1.50702 * 125.37930 * 179.70107 * 4 3 2 6 6 C 1.53005 * 117.49619 * 8.65808 * 5 4 3 7 7 C 1.53003 * 59.99982 * 252.51432 * 6 5 4 8 8 N 1.29934 * 109.24441 * 359.73161 * 4 3 2 9 9 C 1.36066 * 108.47751 * 0.02562 * 8 4 3 10 10 C 1.47419 * 126.45007 * 179.97438 * 9 8 4 11 11 O 1.21606 * 119.99955 * 180.02562 * 10 9 8 12 12 N 1.34780 * 119.99878 * 0.02562 * 10 9 8 13 13 C 1.46500 * 119.99984 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.47065 * 35.00223 * 13 12 10 15 15 C 1.53001 * 109.47057 * 274.99800 * 13 12 10 16 16 C 1.53001 * 109.47003 * 155.00228 * 13 12 10 17 17 C 1.53041 * 109.45988 * 300.06826 * 16 13 12 18 18 C 1.53189 * 109.31425 * 178.61647 * 17 16 13 19 19 N 1.46920 * 108.77517 * 54.63211 * 18 17 16 20 20 C 1.36935 * 120.62752 * 126.41442 * 19 18 17 21 21 H 1.08004 * 119.99946 * 207.66610 * 20 19 18 22 22 C 1.38814 * 120.00466 * 27.66589 * 20 19 18 23 23 N 1.31620 * 119.99469 * 17.36277 * 22 20 19 24 24 Si 1.86796 * 120.00357 * 197.36767 * 22 20 19 25 25 H 1.48500 * 109.47309 * 89.99862 * 24 22 20 26 26 H 1.48498 * 109.47257 * 209.99558 * 24 22 20 27 27 H 1.48495 * 109.47200 * 329.99943 * 24 22 20 28 28 C 1.46921 * 118.74386 * 306.39498 * 19 18 17 29 29 C 1.53031 * 109.45869 * 180.02562 * 16 13 12 30 30 H 1.09000 * 109.47347 * 270.18611 * 1 2 3 31 31 H 1.09000 * 109.47167 * 30.18985 * 1 2 3 32 32 H 1.09002 * 109.46914 * 150.18531 * 1 2 3 33 33 H 1.08999 * 115.55466 * 154.36641 * 5 4 3 34 34 H 1.08997 * 117.49960 * 359.97438 * 6 5 4 35 35 H 1.09002 * 117.49922 * 145.02728 * 6 5 4 36 36 H 1.09008 * 117.49609 * 252.51189 * 7 6 5 37 37 H 1.08996 * 117.49713 * 107.49354 * 7 6 5 38 38 H 0.97000 * 119.99767 * 0.02562 * 12 10 9 39 39 H 1.08996 * 109.47528 * 300.00139 * 15 13 12 40 40 H 1.09011 * 109.46803 * 60.00648 * 15 13 12 41 41 H 1.09001 * 109.47051 * 179.97438 * 15 13 12 42 42 H 1.08997 * 109.46025 * 60.02377 * 16 13 12 43 43 H 1.08996 * 109.49924 * 298.56857 * 17 16 13 44 44 H 1.09005 * 109.49629 * 58.66284 * 17 16 13 45 45 H 1.09004 * 109.58218 * 294.84465 * 18 17 16 46 46 H 1.08997 * 109.58871 * 174.42624 * 18 17 16 47 47 H 0.97006 * 119.99970 * 180.02562 * 23 22 20 48 48 H 1.09003 * 109.58443 * 293.82516 * 28 19 18 49 49 H 1.08993 * 109.59132 * 173.39263 * 28 19 18 50 50 H 1.09007 * 109.50230 * 301.33356 * 29 16 13 51 51 H 1.09000 * 109.50472 * 61.43247 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0790 0.0000 4 6 3.5787 0.6581 -0.0060 5 6 4.7929 1.5508 -0.0144 6 6 4.5683 3.0507 0.1878 7 6 4.9532 2.5140 -1.1924 8 7 3.6002 -0.6410 -0.0039 9 6 2.3170 -1.0936 0.0030 10 6 1.8854 -2.5031 0.0068 11 8 0.7004 -2.7762 0.0126 12 7 2.8042 -3.4892 0.0041 13 6 2.3753 -4.8900 0.0085 14 1 1.4612 -4.9920 -0.5764 15 6 2.1127 -5.3385 1.4475 16 6 3.4731 -5.7615 -0.6050 17 6 3.7368 -5.3116 -2.0438 18 6 4.8601 -6.1634 -2.6432 19 7 4.5003 -7.5816 -2.5107 20 6 4.5009 -8.4065 -3.6037 21 1 3.8488 -9.2671 -3.6312 22 6 5.3396 -8.1368 -4.6765 23 7 6.3599 -7.3194 -4.5247 24 14 5.0201 -8.9338 -6.3354 25 1 4.1233 -8.0639 -7.1381 26 1 6.3071 -9.1148 -7.0537 27 1 4.3757 -10.2564 -6.1333 28 6 4.1401 -8.0982 -1.1833 29 6 3.0245 -7.2246 -0.6008 30 1 -0.3634 0.0033 1.0276 31 1 -0.3633 0.8883 -0.5168 32 1 -0.3633 -0.8917 -0.5110 33 1 5.6992 1.1159 0.4070 34 1 3.5425 3.3918 0.3266 35 1 5.3270 3.6029 0.7426 36 1 5.9651 2.7131 -1.5455 37 1 4.1806 2.5021 -1.9610 38 1 3.7494 -3.2714 -0.0001 39 1 3.0268 -5.2366 2.0324 40 1 1.3305 -4.7176 1.8846 41 1 1.7932 -6.3806 1.4508 42 1 4.3870 -5.6597 -0.0197 43 1 2.8302 -5.4363 -2.6359 44 1 4.0334 -4.2627 -2.0484 45 1 5.7900 -5.9707 -2.1079 46 1 4.9846 -5.9148 -3.6971 47 1 6.9459 -7.1306 -5.2744 48 1 5.0112 -8.0634 -0.5290 49 1 3.7894 -9.1262 -1.2740 50 1 2.8142 -7.5378 0.4219 51 1 2.1248 -7.3311 -1.2067 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997374287.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:18 Heat of formation + Delta-G solvation = -0.471161 kcal Electronic energy + Delta-G solvation = -30912.653792 eV Core-core repulsion = 26813.786581 eV Total energy + Delta-G solvation = -4098.867211 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.59719 -41.01451 -39.42523 -38.17648 -36.85849 -36.02617 -34.53705 -33.31061 -32.63250 -31.85164 -30.38681 -28.61919 -27.18626 -25.79716 -24.62729 -23.82040 -23.59610 -23.32006 -22.54725 -21.59222 -21.30141 -20.60603 -19.01134 -18.57059 -18.12349 -17.47463 -17.20728 -16.84116 -16.46552 -15.99866 -15.80136 -15.57846 -15.31897 -15.12179 -14.90842 -14.79931 -14.63367 -14.34327 -14.07187 -13.97921 -13.58561 -13.56001 -13.28685 -13.21900 -13.08787 -12.75605 -12.71210 -12.62245 -12.46841 -12.40669 -12.18553 -11.97546 -11.92754 -11.82136 -11.75340 -11.57311 -11.50129 -11.33975 -11.13166 -11.02203 -10.54057 -10.18307 -9.73216 -8.67951 -7.87379 -5.32080 -0.06313 0.81118 1.30919 1.44771 1.46763 1.55190 2.02050 2.14822 2.50588 2.61324 2.89411 3.26210 3.49101 3.56671 3.68027 3.72940 3.75208 3.92977 3.95250 4.03371 4.07440 4.13216 4.37878 4.41278 4.46212 4.52956 4.54776 4.56744 4.73235 4.73873 4.76692 4.79664 4.87790 4.89718 4.96366 4.98460 5.02358 5.04627 5.06909 5.10962 5.17795 5.20895 5.27495 5.36861 5.42076 5.45574 5.55271 5.65569 5.75954 6.25088 6.39245 6.53787 7.05008 7.14938 7.87459 8.38618 9.18667 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011574 B = 0.002543 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.723296 B =11007.348108 C =12379.112207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.043 3.957 3 O -0.195 6.195 4 C 0.227 3.773 5 C -0.095 4.095 6 C -0.144 4.144 7 C -0.153 4.153 8 N -0.479 5.479 9 C -0.104 4.104 10 C 0.601 3.399 11 O -0.559 6.559 12 N -0.698 5.698 13 C 0.153 3.847 14 H 0.072 0.928 15 C -0.154 4.154 16 C -0.073 4.073 17 C -0.118 4.118 18 C 0.181 3.819 19 N -0.612 5.612 20 C -0.261 4.261 21 H 0.066 0.934 22 C -0.053 4.053 23 N -0.935 5.935 24 Si 0.965 3.035 25 H -0.288 1.288 26 H -0.294 1.294 27 H -0.267 1.267 28 C 0.140 3.860 29 C -0.113 4.113 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.158 0.842 34 H 0.100 0.900 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.091 0.909 38 H 0.410 0.590 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.040 0.960 44 H 0.056 0.944 45 H -0.002 1.002 46 H 0.048 0.952 47 H 0.249 0.751 48 H 0.017 0.983 49 H 0.055 0.945 50 H 0.093 0.907 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.538 21.594 13.962 26.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.014 4.014 3 O -0.082 6.082 4 C 0.018 3.982 5 C -0.114 4.114 6 C -0.181 4.181 7 C -0.191 4.191 8 N -0.207 5.207 9 C -0.223 4.223 10 C 0.388 3.612 11 O -0.439 6.439 12 N -0.348 5.348 13 C 0.049 3.951 14 H 0.090 0.910 15 C -0.212 4.212 16 C -0.092 4.092 17 C -0.158 4.158 18 C 0.055 3.945 19 N -0.335 5.335 20 C -0.391 4.391 21 H 0.084 0.916 22 C -0.249 4.249 23 N -0.581 5.581 24 Si 0.794 3.206 25 H -0.215 1.215 26 H -0.221 1.221 27 H -0.192 1.192 28 C 0.015 3.985 29 C -0.153 4.153 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.176 0.824 34 H 0.119 0.881 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.110 0.890 38 H 0.246 0.754 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.016 0.984 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.035 0.965 49 H 0.074 0.926 50 H 0.111 0.889 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.718 20.995 13.863 26.316 hybrid contribution 0.219 -0.145 -1.260 1.287 sum -7.498 20.850 12.603 25.491 Atomic orbital electron populations 1.20695 0.80471 1.05929 1.05736 1.24220 0.96150 0.82844 0.98191 1.84297 1.17944 1.36009 1.69961 1.25720 0.83850 0.89518 0.99118 1.20569 0.91191 0.90341 1.09287 1.23239 1.04663 0.90993 0.99207 1.23257 1.05077 0.99254 0.91512 1.70664 1.21585 1.09925 1.18574 1.21535 0.89553 0.95667 1.15514 1.16832 0.85360 0.83076 0.75973 1.90738 1.16873 1.83692 1.52599 1.45893 1.10196 1.05866 1.72805 1.21046 0.97496 0.78779 0.97746 0.90995 1.22149 1.02055 1.02493 0.94518 1.21201 0.97652 0.95170 0.95226 1.21984 0.99082 0.98417 0.96270 1.20520 0.92308 0.82935 0.98762 1.44340 1.79902 1.05456 1.03843 1.19534 1.15847 1.08206 0.95531 0.91588 1.25788 0.95243 1.00971 1.02852 1.70192 1.15889 1.41241 1.30772 0.85293 0.76595 0.78570 0.80188 1.21519 1.22056 1.19187 1.21087 0.95127 0.96473 0.85840 1.21955 0.98363 0.93523 1.01417 0.87467 0.87654 0.88273 0.82442 0.88140 0.84686 0.85083 0.89040 0.75395 0.91569 0.93030 0.89613 0.90791 0.94127 0.92568 0.98440 0.93371 0.94208 0.96469 0.92635 0.88861 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.22 9.88 71.24 0.70 -0.51 16 2 C 0.04 1.01 7.44 25.19 0.19 1.19 16 3 O -0.19 -4.25 10.40 0.34 0.00 -4.25 16 4 C 0.23 5.07 7.80 88.39 0.69 5.76 16 5 C -0.10 -1.35 6.33 -11.54 -0.07 -1.42 16 6 C -0.14 -1.23 10.16 30.60 0.31 -0.92 16 7 C -0.15 -1.60 10.23 30.60 0.31 -1.29 16 8 N -0.48 -13.17 11.06 -293.04 -3.24 -16.41 16 9 C -0.10 -2.94 6.99 40.41 0.28 -2.65 16 10 C 0.60 18.42 7.78 86.66 0.67 19.10 16 11 O -0.56 -18.65 14.47 -4.05 -0.06 -18.71 16 12 N -0.70 -20.17 4.36 -445.80 -1.94 -22.12 16 13 C 0.15 4.36 2.16 44.99 0.10 4.46 16 14 H 0.07 2.32 7.58 -2.39 -0.02 2.30 16 15 C -0.15 -3.62 9.13 71.98 0.66 -2.96 16 16 C -0.07 -2.35 1.79 -10.77 -0.02 -2.37 16 17 C -0.12 -4.68 5.22 30.67 0.16 -4.52 16 18 C 0.18 9.01 5.31 86.36 0.46 9.46 16 19 N -0.61 -31.40 2.99 -699.12 -2.09 -33.49 16 20 C -0.26 -14.71 9.58 84.03 0.81 -13.90 16 21 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 22 C -0.05 -3.06 4.91 84.86 0.42 -2.64 16 23 N -0.93 -56.62 11.19 21.65 0.24 -56.38 16 24 Si 0.97 46.04 29.59 68.60 2.03 48.07 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 26 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 27 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 28 C 0.14 5.76 6.52 86.37 0.56 6.32 16 29 C -0.11 -3.66 5.04 30.67 0.15 -3.51 16 30 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.10 2.03 6.48 -2.39 -0.02 2.02 16 33 H 0.16 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.10 0.94 7.94 -2.39 -0.02 0.92 16 35 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.13 0.88 8.14 -2.38 -0.02 0.86 16 37 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.41 11.57 8.11 -92.71 -0.75 10.82 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.09 1.77 6.40 -2.39 -0.02 1.76 16 42 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.04 1.70 8.14 -2.39 -0.02 1.69 16 44 H 0.06 2.10 7.40 -2.38 -0.02 2.08 16 45 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 46 H 0.05 2.75 6.04 -2.39 -0.01 2.74 16 47 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 48 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.06 2.23 7.93 -2.39 -0.02 2.21 16 50 H 0.09 2.36 6.36 -2.38 -0.02 2.34 16 51 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -72.21 407.93 1.51 -70.70 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.19 Total: 22.98 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 6.38 Total: 9.59 kcal Atomic # 7 Polarization: -121.36 SS G_CDS: -7.03 Total: -128.40 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.06 Total: -22.96 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -72.21 1.51 -70.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997374287.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.233 kcal (2) G-P(sol) polarization free energy of solvation -72.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds