Wall clock time and date at job start Wed Apr 1 2020 04:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34862 * 119.10548 * 2 1 4 4 C 1.41666 * 119.34415 * 180.23531 * 3 2 1 5 5 O 1.22080 * 121.07038 * 179.72229 * 4 3 2 6 6 C 1.47101 * 117.85901 * 359.75789 * 4 3 2 7 7 C 1.47292 * 120.88187 * 179.97438 * 6 4 3 8 8 O 1.21618 * 120.00026 * 0.02562 * 7 6 4 9 9 N 1.34779 * 120.00051 * 180.02562 * 7 6 4 10 10 C 1.46500 * 119.99858 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.46778 * 324.99857 * 10 9 7 12 12 C 1.52997 * 109.47111 * 84.99854 * 10 9 7 13 13 C 1.52994 * 109.46956 * 204.99780 * 10 9 7 14 14 C 1.53041 * 109.46426 * 300.06876 * 13 10 9 15 15 C 1.53190 * 109.31704 * 178.61639 * 14 13 10 16 16 N 1.46926 * 108.77283 * 54.63446 * 15 14 13 17 17 C 1.36939 * 120.62836 * 126.42086 * 16 15 14 18 18 H 1.08004 * 119.99679 * 207.57728 * 17 16 15 19 19 C 1.38814 * 120.00396 * 27.56821 * 17 16 15 20 20 N 1.31621 * 119.99499 * 17.52309 * 19 17 16 21 21 Si 1.86802 * 120.00139 * 197.52530 * 19 17 16 22 22 H 1.48494 * 109.46950 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46783 * 120.00099 * 21 19 17 24 24 H 1.48503 * 109.46951 * 240.00057 * 21 19 17 25 25 C 1.46917 * 118.73925 * 306.38823 * 16 15 14 26 26 C 1.53042 * 109.46147 * 179.97438 * 13 10 9 27 27 C 1.37992 * 118.23857 * 359.97438 * 6 4 3 28 28 N 1.34347 * 120.37106 * 0.02562 * 27 6 4 29 29 C 1.46497 * 118.80725 * 179.97438 * 28 27 6 30 30 H 1.09000 * 109.47375 * 264.31698 * 1 2 3 31 31 H 1.09001 * 109.46801 * 24.31439 * 1 2 3 32 32 H 1.09000 * 109.47651 * 144.31175 * 1 2 3 33 33 H 1.08007 * 120.32812 * 0.02562 * 3 2 1 34 34 H 0.97000 * 119.99843 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.47193 * 300.00184 * 12 10 9 36 36 H 1.08996 * 109.47387 * 59.99847 * 12 10 9 37 37 H 1.08999 * 109.47404 * 180.02562 * 12 10 9 38 38 H 1.09003 * 109.46087 * 60.02622 * 13 10 9 39 39 H 1.09004 * 109.49331 * 298.56764 * 14 13 10 40 40 H 1.09005 * 109.49650 * 58.65882 * 14 13 10 41 41 H 1.08995 * 109.58258 * 294.84790 * 15 14 13 42 42 H 1.09005 * 109.58642 * 174.42222 * 15 14 13 43 43 H 0.97006 * 119.99330 * 179.97438 * 20 19 17 44 44 H 1.09005 * 109.59244 * 293.82285 * 25 16 15 45 45 H 1.09005 * 109.58637 * 173.39830 * 25 16 15 46 46 H 1.08999 * 109.49472 * 301.34011 * 26 13 10 47 47 H 1.09010 * 109.49516 * 61.43393 * 26 13 10 48 48 H 1.08000 * 119.81485 * 180.02562 * 27 6 4 49 49 H 1.09003 * 109.47022 * 95.96548 * 29 28 27 50 50 H 1.09006 * 109.47054 * 335.97251 * 29 28 27 51 51 H 1.08997 * 109.47228 * 215.97392 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1630 1.1783 0.0000 4 6 3.5796 1.1842 -0.0051 5 8 4.2053 2.2325 -0.0103 6 6 4.2724 -0.1134 -0.0047 7 6 5.7436 -0.1850 -0.0103 8 8 6.4021 0.8375 -0.0149 9 7 6.3600 -1.3835 -0.0104 10 6 7.8233 -1.4546 -0.0166 11 1 8.2244 -0.6327 -0.6096 12 6 8.3450 -1.3506 1.4179 13 6 8.2665 -2.7865 -0.6251 14 6 7.7017 -3.9403 0.2067 15 6 8.1187 -5.2721 -0.4252 16 7 9.5808 -5.2904 -0.5680 17 6 10.3191 -6.3232 -0.0545 18 1 11.3437 -6.1580 0.2446 19 6 9.7506 -7.5822 0.0819 20 7 8.6527 -7.8835 -0.5787 21 14 10.5435 -8.8486 1.2030 22 1 11.7592 -8.2662 1.8258 23 1 9.5821 -9.2408 2.2646 24 1 10.9198 -10.0459 0.4091 25 6 10.2358 -4.1801 -1.2729 26 6 9.7951 -2.8603 -0.6321 27 6 3.5075 -1.2619 0.0012 28 7 2.1663 -1.1848 0.0058 29 6 1.3878 -2.4258 0.0113 30 1 -0.3634 -0.1018 1.0226 31 1 -0.3633 0.9365 -0.4231 32 1 -0.3634 -0.8346 -0.5995 33 1 1.6137 2.1083 0.0004 34 1 5.8348 -2.1990 -0.0063 35 1 8.0292 -0.4018 1.8515 36 1 7.9438 -2.1724 2.0110 37 1 9.4337 -1.4031 1.4133 38 1 7.8951 -2.8602 -1.6473 39 1 8.0923 -3.8816 1.2226 40 1 6.6140 -3.8735 0.2302 41 1 7.6544 -5.3722 -1.4063 42 1 7.8037 -6.0953 0.2161 43 1 8.2557 -8.7634 -0.4836 44 1 9.9442 -4.1912 -2.3231 45 1 11.3179 -4.2828 -1.1909 46 1 10.1971 -2.0250 -1.2055 47 1 10.1664 -2.8116 0.3917 48 1 3.9898 -2.2283 0.0020 49 1 1.1079 -2.6745 1.0350 50 1 1.9884 -3.2333 -0.4075 51 1 0.4881 -2.2930 -0.5894 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997629296.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:53 Heat of formation + Delta-G solvation = -15.095009 kcal Electronic energy + Delta-G solvation = -31178.891459 eV Core-core repulsion = 27079.390110 eV Total energy + Delta-G solvation = -4099.501349 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.50278 -39.64964 -38.24457 -37.55665 -35.14749 -33.93994 -33.14956 -32.52218 -30.90906 -30.01538 -29.01996 -28.14224 -27.25040 -25.43677 -24.56063 -23.44530 -22.42123 -21.95421 -20.82313 -20.23486 -18.74464 -18.28537 -17.77251 -16.71410 -16.49294 -16.43345 -16.03607 -15.51293 -14.86732 -14.75449 -14.66482 -14.23175 -14.01656 -13.91923 -13.85014 -13.67965 -13.51862 -13.46061 -13.30226 -12.99758 -12.79578 -12.62401 -12.46974 -12.32269 -12.20824 -12.10684 -11.54873 -11.48703 -11.19296 -10.83458 -10.74247 -10.45648 -10.16779 -10.14778 -9.97063 -9.84242 -9.79905 -9.59454 -9.36443 -9.20587 -8.84299 -8.49235 -8.17914 -6.69043 -5.82008 -3.22734 0.61407 1.04279 2.00478 3.01148 3.26852 3.33980 3.42496 3.45065 3.70812 3.78717 4.06660 4.17536 4.37192 4.47440 4.47892 4.70126 4.78089 4.81878 4.88438 5.02228 5.17130 5.22243 5.22603 5.34969 5.38810 5.43634 5.49718 5.54897 5.72218 5.79066 5.92479 6.05011 6.09370 6.15783 6.24604 6.26130 6.31059 6.39736 6.46557 6.51175 6.54602 6.73307 6.75360 6.77286 6.85288 7.01670 7.33768 7.60414 7.70552 7.77829 8.04662 8.42528 8.49482 9.19398 9.83194 10.39857 11.26550 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014559 B = 0.002521 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.703223 B =11105.242904 C =12569.741273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.155 3.845 3 C -0.270 4.270 4 C 0.408 3.592 5 O -0.481 6.481 6 C -0.298 4.298 7 C 0.571 3.429 8 O -0.515 6.515 9 N -0.727 5.727 10 C 0.149 3.851 11 H 0.083 0.917 12 C -0.162 4.162 13 C -0.085 4.085 14 C -0.135 4.135 15 C 0.172 3.828 16 N -0.592 5.592 17 C -0.247 4.247 18 H 0.066 0.934 19 C 0.000 4.000 20 N -0.904 5.904 21 Si 0.900 3.100 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.145 3.855 26 C -0.126 4.126 27 C 0.174 3.826 28 N -0.471 5.471 29 C 0.046 3.954 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.152 0.848 34 H 0.391 0.609 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.039 0.961 41 H 0.015 0.985 42 H 0.086 0.914 43 H 0.252 0.748 44 H 0.016 0.984 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.064 0.936 48 H 0.168 0.832 49 H 0.083 0.917 50 H 0.096 0.904 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.471 10.036 1.422 22.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 C -0.294 4.294 4 C 0.293 3.707 5 O -0.362 6.362 6 C -0.309 4.309 7 C 0.357 3.643 8 O -0.390 6.390 9 N -0.380 5.380 10 C 0.045 3.955 11 H 0.101 0.899 12 C -0.220 4.220 13 C -0.104 4.104 14 C -0.174 4.174 15 C 0.046 3.954 16 N -0.315 5.315 17 C -0.377 4.377 18 H 0.083 0.917 19 C -0.198 4.198 20 N -0.549 5.549 21 Si 0.730 3.270 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.019 3.981 26 C -0.166 4.166 27 C 0.043 3.957 28 N -0.158 5.158 29 C -0.095 4.095 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.169 0.831 34 H 0.227 0.773 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.033 0.967 42 H 0.105 0.895 43 H 0.062 0.938 44 H 0.034 0.966 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.083 0.917 48 H 0.185 0.815 49 H 0.102 0.898 50 H 0.115 0.885 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -19.837 11.033 1.415 22.743 hybrid contribution -0.052 -1.413 0.543 1.514 sum -19.889 9.620 1.958 22.180 Atomic orbital electron populations 1.21190 0.88055 1.05060 1.04133 1.20276 0.94873 0.84994 0.94965 1.22283 0.96348 0.97178 1.13612 1.18148 0.88217 0.87906 0.76391 1.90820 1.69939 1.33222 1.42186 1.22602 0.94559 0.95078 1.18612 1.17491 0.86030 0.83778 0.76957 1.90836 1.65823 1.34000 1.48358 1.46146 1.08018 1.07481 1.76390 1.21055 0.78495 0.98868 0.97114 0.89921 1.22226 1.01683 1.01651 0.96484 1.21315 0.97080 0.92750 0.99299 1.22293 0.97359 0.97716 1.00078 1.20754 0.83790 0.93172 0.97715 1.44051 1.02309 1.21516 1.63591 1.19250 0.96807 0.87553 1.34075 0.91651 1.25013 0.98425 0.96702 0.99692 1.70052 1.22509 1.20642 1.41738 0.86249 0.78758 0.81449 0.80510 1.20256 1.21635 1.21790 1.20902 0.96416 0.87155 0.93634 1.22071 0.93906 0.98971 1.01643 1.22278 0.82173 1.00046 0.91203 1.42573 1.05304 1.07285 1.60614 1.22590 0.97920 0.84357 1.04629 0.89312 0.88887 0.90056 0.83081 0.77341 0.92880 0.92125 0.91300 0.91490 0.91947 0.94285 0.96698 0.89539 0.93828 0.96582 0.92776 0.92943 0.91689 0.81515 0.89803 0.88496 0.88758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.28 9.34 36.00 0.34 0.06 16 2 C 0.15 0.99 6.64 -82.13 -0.54 0.44 16 3 C -0.27 -2.73 9.57 -39.47 -0.38 -3.11 16 4 C 0.41 6.20 6.96 -34.68 -0.24 5.96 16 5 O -0.48 -9.73 16.41 -15.17 -0.25 -9.98 16 6 C -0.30 -3.96 6.05 -102.71 -0.62 -4.58 16 7 C 0.57 9.24 7.74 -12.58 -0.10 9.14 16 8 O -0.52 -10.83 15.24 -14.75 -0.22 -11.06 16 9 N -0.73 -9.86 4.95 -54.93 -0.27 -10.13 16 10 C 0.15 2.22 2.40 -67.94 -0.16 2.06 16 11 H 0.08 1.37 7.58 -51.93 -0.39 0.98 16 12 C -0.16 -2.39 8.78 37.16 0.33 -2.06 16 13 C -0.09 -1.35 2.14 -90.58 -0.19 -1.54 16 14 C -0.14 -2.29 4.82 -26.61 -0.13 -2.42 16 15 C 0.17 3.81 5.31 -3.71 -0.02 3.79 16 16 N -0.59 -14.28 3.00 -172.32 -0.52 -14.80 16 17 C -0.25 -6.62 9.59 -15.06 -0.14 -6.76 16 18 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16 19 C 0.00 -0.01 4.91 -17.43 -0.09 -0.09 16 20 N -0.90 -25.37 11.19 55.49 0.62 -24.75 16 21 Si 0.90 21.21 29.59 -169.99 -5.03 16.18 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 C 0.15 2.97 6.51 -3.72 -0.02 2.95 16 26 C -0.13 -2.13 4.97 -26.61 -0.13 -2.26 16 27 C 0.17 1.40 9.80 -16.54 -0.16 1.24 16 28 N -0.47 -2.68 2.97 -119.75 -0.36 -3.03 16 29 C 0.05 0.07 9.99 59.85 0.60 0.67 16 30 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.09 0.16 7.98 -51.93 -0.41 -0.25 16 32 H 0.08 0.03 6.00 -51.93 -0.31 -0.28 16 33 H 0.15 1.30 8.01 -52.48 -0.42 0.88 16 34 H 0.39 4.23 4.92 -40.82 -0.20 4.03 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.87 6.46 -51.93 -0.34 0.54 16 37 H 0.07 0.99 6.46 -51.93 -0.34 0.65 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.11 6.51 -51.93 -0.34 0.78 16 40 H 0.04 0.54 6.46 -51.93 -0.34 0.21 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 2.17 6.03 -51.93 -0.31 1.85 16 43 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.06 1.12 6.51 -51.92 -0.34 0.78 16 48 H 0.17 0.87 6.28 -52.49 -0.33 0.54 16 49 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 50 H 0.10 0.06 7.86 -51.93 -0.41 -0.35 16 51 H 0.09 -0.02 5.92 -51.93 -0.31 -0.33 16 LS Contribution 394.28 15.07 5.94 5.94 Total: -1.00 -38.56 394.28 -9.46 -48.02 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.70 Total: 0.11 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -1.68 Total: 3.48 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.52 Total: -52.71 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.47 Total: -21.04 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.56 -9.46 -48.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997629296.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.930 kcal (2) G-P(sol) polarization free energy of solvation -38.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds