Wall clock time and date at job start Wed Apr 1 2020 04:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34862 * 119.10548 * 2 1 4 4 C 1.41666 * 119.34415 * 180.23531 * 3 2 1 5 5 O 1.22080 * 121.07038 * 179.72229 * 4 3 2 6 6 C 1.47101 * 117.85901 * 359.75789 * 4 3 2 7 7 C 1.47292 * 120.88187 * 179.97438 * 6 4 3 8 8 O 1.21618 * 120.00026 * 0.02562 * 7 6 4 9 9 N 1.34779 * 120.00051 * 180.02562 * 7 6 4 10 10 C 1.46500 * 119.99858 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.46778 * 324.99857 * 10 9 7 12 12 C 1.52997 * 109.47111 * 84.99854 * 10 9 7 13 13 C 1.52994 * 109.46956 * 204.99780 * 10 9 7 14 14 C 1.53041 * 109.46426 * 300.06876 * 13 10 9 15 15 C 1.53190 * 109.31704 * 178.61639 * 14 13 10 16 16 N 1.46926 * 108.77283 * 54.63446 * 15 14 13 17 17 C 1.36939 * 120.62836 * 126.42086 * 16 15 14 18 18 H 1.08004 * 119.99679 * 207.57728 * 17 16 15 19 19 C 1.38814 * 120.00396 * 27.56821 * 17 16 15 20 20 N 1.31621 * 119.99499 * 17.52309 * 19 17 16 21 21 Si 1.86802 * 120.00139 * 197.52530 * 19 17 16 22 22 H 1.48494 * 109.46950 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46783 * 120.00099 * 21 19 17 24 24 H 1.48503 * 109.46951 * 240.00057 * 21 19 17 25 25 C 1.46917 * 118.73925 * 306.38823 * 16 15 14 26 26 C 1.53042 * 109.46147 * 179.97438 * 13 10 9 27 27 C 1.37992 * 118.23857 * 359.97438 * 6 4 3 28 28 N 1.34347 * 120.37106 * 0.02562 * 27 6 4 29 29 C 1.46497 * 118.80725 * 179.97438 * 28 27 6 30 30 H 1.09000 * 109.47375 * 264.31698 * 1 2 3 31 31 H 1.09001 * 109.46801 * 24.31439 * 1 2 3 32 32 H 1.09000 * 109.47651 * 144.31175 * 1 2 3 33 33 H 1.08007 * 120.32812 * 0.02562 * 3 2 1 34 34 H 0.97000 * 119.99843 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.47193 * 300.00184 * 12 10 9 36 36 H 1.08996 * 109.47387 * 59.99847 * 12 10 9 37 37 H 1.08999 * 109.47404 * 180.02562 * 12 10 9 38 38 H 1.09003 * 109.46087 * 60.02622 * 13 10 9 39 39 H 1.09004 * 109.49331 * 298.56764 * 14 13 10 40 40 H 1.09005 * 109.49650 * 58.65882 * 14 13 10 41 41 H 1.08995 * 109.58258 * 294.84790 * 15 14 13 42 42 H 1.09005 * 109.58642 * 174.42222 * 15 14 13 43 43 H 0.97006 * 119.99330 * 179.97438 * 20 19 17 44 44 H 1.09005 * 109.59244 * 293.82285 * 25 16 15 45 45 H 1.09005 * 109.58637 * 173.39830 * 25 16 15 46 46 H 1.08999 * 109.49472 * 301.34011 * 26 13 10 47 47 H 1.09010 * 109.49516 * 61.43393 * 26 13 10 48 48 H 1.08000 * 119.81485 * 180.02562 * 27 6 4 49 49 H 1.09003 * 109.47022 * 95.96548 * 29 28 27 50 50 H 1.09006 * 109.47054 * 335.97251 * 29 28 27 51 51 H 1.08997 * 109.47228 * 215.97392 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1630 1.1783 0.0000 4 6 3.5796 1.1842 -0.0051 5 8 4.2053 2.2325 -0.0103 6 6 4.2724 -0.1134 -0.0047 7 6 5.7436 -0.1850 -0.0103 8 8 6.4021 0.8375 -0.0149 9 7 6.3600 -1.3835 -0.0104 10 6 7.8233 -1.4546 -0.0166 11 1 8.2244 -0.6327 -0.6096 12 6 8.3450 -1.3506 1.4179 13 6 8.2665 -2.7865 -0.6251 14 6 7.7017 -3.9403 0.2067 15 6 8.1187 -5.2721 -0.4252 16 7 9.5808 -5.2904 -0.5680 17 6 10.3191 -6.3232 -0.0545 18 1 11.3437 -6.1580 0.2446 19 6 9.7506 -7.5822 0.0819 20 7 8.6527 -7.8835 -0.5787 21 14 10.5435 -8.8486 1.2030 22 1 11.7592 -8.2662 1.8258 23 1 9.5821 -9.2408 2.2646 24 1 10.9198 -10.0459 0.4091 25 6 10.2358 -4.1801 -1.2729 26 6 9.7951 -2.8603 -0.6321 27 6 3.5075 -1.2619 0.0012 28 7 2.1663 -1.1848 0.0058 29 6 1.3878 -2.4258 0.0113 30 1 -0.3634 -0.1018 1.0226 31 1 -0.3633 0.9365 -0.4231 32 1 -0.3634 -0.8346 -0.5995 33 1 1.6137 2.1083 0.0004 34 1 5.8348 -2.1990 -0.0063 35 1 8.0292 -0.4018 1.8515 36 1 7.9438 -2.1724 2.0110 37 1 9.4337 -1.4031 1.4133 38 1 7.8951 -2.8602 -1.6473 39 1 8.0923 -3.8816 1.2226 40 1 6.6140 -3.8735 0.2302 41 1 7.6544 -5.3722 -1.4063 42 1 7.8037 -6.0953 0.2161 43 1 8.2557 -8.7634 -0.4836 44 1 9.9442 -4.1912 -2.3231 45 1 11.3179 -4.2828 -1.1909 46 1 10.1971 -2.0250 -1.2055 47 1 10.1664 -2.8116 0.3917 48 1 3.9898 -2.2283 0.0020 49 1 1.1079 -2.6745 1.0350 50 1 1.9884 -3.2333 -0.4075 51 1 0.4881 -2.2930 -0.5894 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997629296.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:52 Heat of formation + Delta-G solvation = -40.786714 kcal Electronic energy + Delta-G solvation = -31180.005535 eV Core-core repulsion = 27079.390110 eV Total energy + Delta-G solvation = -4100.615425 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.24331 -40.84578 -39.49272 -38.79025 -36.70181 -34.83969 -34.21288 -33.66958 -32.39110 -31.58344 -30.34369 -28.87589 -27.67568 -27.11737 -25.42808 -24.84031 -23.92551 -23.06552 -21.99182 -21.50217 -20.18891 -19.25201 -18.65812 -18.40969 -17.27909 -17.00927 -16.94476 -16.72108 -16.70081 -15.92637 -15.63127 -15.59128 -15.46637 -15.28110 -14.82589 -14.77851 -14.53846 -14.22562 -14.07228 -14.06448 -13.83863 -13.82040 -13.56637 -13.32570 -13.11936 -12.94237 -12.88720 -12.68122 -12.55376 -12.51869 -12.41779 -12.14439 -11.89494 -11.68572 -11.51973 -11.22448 -11.06281 -10.95564 -10.50341 -10.48653 -10.31176 -10.06718 -9.05645 -8.62861 -7.84175 -5.27286 -0.21151 0.32404 1.46452 1.47239 1.50422 1.60005 1.91130 2.15719 2.54080 2.79369 3.21549 3.29816 3.59321 3.62996 3.73054 3.79538 3.83863 3.92432 4.07104 4.21022 4.24438 4.41424 4.42616 4.45304 4.47373 4.59277 4.66034 4.71878 4.73730 4.75334 4.80893 4.83152 4.86743 4.97213 5.00219 5.03903 5.15733 5.18789 5.26246 5.29998 5.31668 5.34142 5.46648 5.54832 5.62322 5.69884 5.72131 5.80009 5.86537 6.43887 6.62567 7.09255 7.20408 7.35727 7.91901 8.42671 9.21945 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014559 B = 0.002521 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.703223 B =11105.242904 C =12569.741273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.187 3.813 3 C -0.304 4.304 4 C 0.383 3.617 5 O -0.567 6.567 6 C -0.352 4.352 7 C 0.569 3.431 8 O -0.578 6.578 9 N -0.711 5.711 10 C 0.158 3.842 11 H 0.066 0.934 12 C -0.156 4.156 13 C -0.073 4.073 14 C -0.120 4.120 15 C 0.177 3.823 16 N -0.610 5.610 17 C -0.259 4.259 18 H 0.061 0.939 19 C -0.048 4.048 20 N -0.931 5.931 21 Si 0.961 3.039 22 H -0.272 1.272 23 H -0.287 1.287 24 H -0.294 1.294 25 C 0.142 3.858 26 C -0.118 4.118 27 C 0.218 3.782 28 N -0.455 5.455 29 C 0.030 3.970 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.155 0.845 34 H 0.407 0.593 35 H 0.038 0.962 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.076 0.924 41 H -0.002 1.002 42 H 0.056 0.944 43 H 0.250 0.750 44 H 0.012 0.988 45 H 0.050 0.950 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.206 0.794 49 H 0.106 0.894 50 H 0.114 0.886 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.695 7.713 2.042 25.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.079 3.921 3 C -0.327 4.327 4 C 0.276 3.724 5 O -0.456 6.456 6 C -0.363 4.363 7 C 0.359 3.641 8 O -0.457 6.457 9 N -0.366 5.366 10 C 0.053 3.947 11 H 0.084 0.916 12 C -0.214 4.214 13 C -0.092 4.092 14 C -0.159 4.159 15 C 0.052 3.948 16 N -0.334 5.334 17 C -0.389 4.389 18 H 0.079 0.921 19 C -0.243 4.243 20 N -0.578 5.578 21 Si 0.790 3.210 22 H -0.196 1.196 23 H -0.214 1.214 24 H -0.222 1.222 25 C 0.016 3.984 26 C -0.157 4.157 27 C 0.084 3.916 28 N -0.138 5.138 29 C -0.108 4.108 30 H 0.129 0.871 31 H 0.117 0.883 32 H 0.130 0.870 33 H 0.173 0.827 34 H 0.245 0.755 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.016 0.984 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.030 0.970 45 H 0.069 0.931 46 H 0.091 0.909 47 H 0.083 0.917 48 H 0.223 0.777 49 H 0.124 0.876 50 H 0.133 0.867 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -23.132 8.644 2.035 24.778 hybrid contribution 0.780 -0.884 0.296 1.215 sum -22.352 7.760 2.331 23.775 Atomic orbital electron populations 1.21406 0.83957 1.06833 1.06072 1.20852 0.97063 0.83896 0.90296 1.22156 0.94093 0.99417 1.17059 1.18936 0.90334 0.87806 0.75317 1.90762 1.71696 1.35541 1.47600 1.22232 0.93379 0.96267 1.24418 1.17943 0.87272 0.83299 0.75614 1.90796 1.67354 1.36118 1.51482 1.45916 1.07444 1.07526 1.75671 1.20827 0.79388 0.97526 0.96941 0.91596 1.22164 1.01952 1.01132 0.96168 1.21165 0.96283 0.92563 0.99181 1.22098 0.99720 0.94896 0.99220 1.20621 0.82816 0.94906 0.96490 1.44335 1.03130 1.21790 1.64141 1.19506 0.96999 0.88522 1.33875 0.92112 1.25676 0.99231 0.98373 1.01068 1.70176 1.23710 1.20888 1.42983 0.85300 0.78074 0.78951 0.78672 1.19648 1.21378 1.22174 1.21015 0.96162 0.87773 0.93411 1.21953 0.94770 0.97473 1.01537 1.22640 0.83050 0.99586 0.86364 1.43193 1.04961 1.09044 1.56634 1.23139 0.98604 0.82173 1.06900 0.87144 0.88296 0.86959 0.82705 0.75500 0.94281 0.91346 0.90925 0.91413 0.92331 0.90559 0.98429 0.92525 0.94114 0.97007 0.93132 0.90928 0.91745 0.77726 0.87604 0.86720 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.10 9.34 71.24 0.67 0.77 16 2 C 0.19 1.76 6.64 41.20 0.27 2.03 16 3 C -0.30 -6.19 9.57 22.34 0.21 -5.98 16 4 C 0.38 12.58 6.96 25.44 0.18 12.76 16 5 O -0.57 -25.81 16.41 13.56 0.22 -25.59 16 6 C -0.35 -9.48 6.05 -18.63 -0.11 -9.59 16 7 C 0.57 19.07 7.74 86.62 0.67 19.74 16 8 O -0.58 -26.25 15.24 15.05 0.23 -26.02 16 9 N -0.71 -18.52 4.95 -445.94 -2.21 -20.73 16 10 C 0.16 4.60 2.40 44.99 0.11 4.71 16 11 H 0.07 2.21 7.58 -2.39 -0.02 2.19 16 12 C -0.16 -4.49 8.78 71.98 0.63 -3.86 16 13 C -0.07 -2.18 2.14 -10.77 -0.02 -2.21 16 14 C -0.12 -3.82 4.82 30.67 0.15 -3.67 16 15 C 0.18 7.75 5.31 86.36 0.46 8.21 16 16 N -0.61 -29.36 3.00 -699.11 -2.09 -31.45 16 17 C -0.26 -13.86 9.59 84.03 0.81 -13.05 16 18 H 0.06 3.24 7.89 -2.91 -0.02 3.22 16 19 C -0.05 -2.59 4.91 84.86 0.42 -2.18 16 20 N -0.93 -52.44 11.19 21.65 0.24 -52.19 16 21 Si 0.96 43.55 29.59 68.60 2.03 45.58 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 23 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 24 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 25 C 0.14 5.75 6.51 86.36 0.56 6.31 16 26 C -0.12 -3.84 4.97 30.67 0.15 -3.69 16 27 C 0.22 2.81 9.80 84.25 0.83 3.64 16 28 N -0.46 -3.05 2.97 -532.77 -1.58 -4.63 16 29 C 0.03 -0.12 9.99 127.77 1.28 1.16 16 30 H 0.11 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H 0.10 -0.06 7.98 -2.39 -0.02 -0.08 16 32 H 0.11 -0.69 6.00 -2.39 -0.01 -0.71 16 33 H 0.16 2.84 8.01 -2.91 -0.02 2.81 16 34 H 0.41 7.53 4.92 -92.71 -0.46 7.07 16 35 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.85 6.46 -2.39 -0.02 1.83 16 37 H 0.07 2.02 6.46 -2.39 -0.02 2.00 16 38 H 0.07 2.07 8.14 -2.39 -0.02 2.06 16 39 H 0.06 1.95 6.51 -2.39 -0.02 1.94 16 40 H 0.08 1.84 6.46 -2.38 -0.02 1.82 16 41 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 42 H 0.06 2.83 6.03 -2.38 -0.01 2.81 16 43 H 0.25 13.55 8.31 -92.70 -0.77 12.78 16 44 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 45 H 0.05 2.04 7.93 -2.38 -0.02 2.02 16 46 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.06 2.13 6.51 -2.38 -0.02 2.11 16 48 H 0.21 1.02 6.28 -2.91 -0.02 1.00 16 49 H 0.11 -0.66 8.14 -2.39 -0.02 -0.68 16 50 H 0.11 -0.68 7.86 -2.38 -0.02 -0.70 16 51 H 0.12 -0.99 5.92 -2.39 -0.01 -1.00 16 Total: -1.00 -94.83 394.28 4.59 -90.25 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.50 Total: 9.69 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 7.25 Total: 15.10 kcal Atomic # 7 Polarization: -103.36 SS G_CDS: -5.64 Total: -109.01 kcal Atomic # 8 Polarization: -52.06 SS G_CDS: 0.45 Total: -51.61 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -94.83 4.59 -90.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997629296.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.459 kcal (2) G-P(sol) polarization free energy of solvation -94.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds