Wall clock time and date at job start Wed Apr 1 2020 04:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30008 * 127.33848 * 2 1 4 4 O 1.20659 * 112.30125 * 180.29206 * 3 2 1 5 5 C 1.33492 * 113.15827 * 359.69020 * 4 3 2 6 6 C 1.50698 * 126.83234 * 179.97438 * 5 4 3 7 7 C 1.37364 * 106.33983 * 359.97438 * 5 4 3 8 8 C 1.47399 * 128.56600 * 179.97438 * 7 5 4 9 9 O 1.21609 * 119.99522 * 89.99786 * 8 7 5 10 10 N 1.34766 * 120.00374 * 270.00587 * 8 7 5 11 11 C 1.46926 * 120.62976 * 359.71914 * 10 8 7 12 12 C 1.53625 * 108.54633 * 126.36929 * 11 10 8 13 13 C 1.53043 * 109.23940 * 54.85674 * 12 11 10 14 14 C 1.52999 * 109.44915 * 178.50079 * 13 12 11 15 15 H 1.08999 * 109.87552 * 181.02218 * 14 13 12 16 16 C 1.54328 * 109.88576 * 59.84603 * 14 13 12 17 17 C 1.55152 * 102.94338 * 218.39431 * 16 14 13 18 18 C 1.54908 * 101.58380 * 35.50107 * 17 16 14 19 19 N 1.47022 * 109.88313 * 302.04013 * 14 13 12 20 20 C 1.36940 * 125.64529 * 298.39930 * 19 14 13 21 21 H 1.07997 * 119.99778 * 345.67913 * 20 19 14 22 22 C 1.38810 * 119.99810 * 165.69132 * 20 19 14 23 23 N 1.31622 * 120.00559 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99865 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47455 * 59.99820 * 24 22 20 26 26 H 1.48506 * 109.47078 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47073 * 299.99473 * 24 22 20 28 28 C 1.53047 * 109.53884 * 298.51043 * 13 12 11 29 29 C 1.46925 * 120.63234 * 179.97438 * 10 8 7 30 30 H 1.08994 * 109.47217 * 270.20480 * 1 2 3 31 31 H 1.09004 * 109.46880 * 30.20073 * 1 2 3 32 32 H 1.09007 * 109.47608 * 150.19759 * 1 2 3 33 33 H 1.08999 * 109.47109 * 270.02533 * 6 5 4 34 34 H 1.09000 * 109.46793 * 30.02382 * 6 5 4 35 35 H 1.08997 * 109.47125 * 150.02113 * 6 5 4 36 36 H 1.09006 * 109.58622 * 246.20134 * 11 10 8 37 37 H 1.09001 * 109.58652 * 6.62579 * 11 10 8 38 38 H 1.08996 * 109.63691 * 294.86656 * 12 11 10 39 39 H 1.08994 * 109.43292 * 174.71790 * 12 11 10 40 40 H 1.08996 * 109.46636 * 58.53240 * 13 12 11 41 41 H 1.09002 * 110.71655 * 336.76015 * 16 14 13 42 42 H 1.09005 * 110.71655 * 100.02541 * 16 14 13 43 43 H 1.09006 * 111.00270 * 277.42156 * 17 16 14 44 44 H 1.09002 * 111.00258 * 153.58030 * 17 16 14 45 45 H 1.08997 * 110.36312 * 204.15103 * 18 17 16 46 46 H 1.08998 * 110.46044 * 81.87984 * 18 17 16 47 47 H 0.96993 * 120.00234 * 180.02562 * 23 22 20 48 48 H 1.09005 * 109.49683 * 301.41768 * 28 13 12 49 49 H 1.08997 * 109.49824 * 181.31788 * 28 13 12 50 50 H 1.09003 * 109.58620 * 353.36660 * 29 10 8 51 51 H 1.08994 * 109.58814 * 113.65378 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0336 0.0000 4 8 3.4608 0.7206 -0.0057 5 6 3.6494 -0.6009 -0.0039 6 6 4.9711 -1.3249 -0.0101 7 6 2.3991 -1.1697 0.0047 8 6 2.0399 -2.5993 0.0095 9 8 1.8982 -3.1870 1.0646 10 7 1.8687 -3.2550 -1.1554 11 6 2.0306 -2.5570 -2.4381 12 6 3.0391 -3.3371 -3.2950 13 6 2.5740 -4.7894 -3.4245 14 6 3.5555 -5.5619 -4.3081 15 1 3.2209 -6.5932 -4.4198 16 6 4.9649 -5.5290 -3.6802 17 6 5.8921 -5.3797 -4.9151 18 6 5.0394 -4.4722 -5.8365 19 7 3.6508 -4.9213 -5.6280 20 6 2.6201 -4.7667 -6.5163 21 1 1.7038 -5.3225 -6.3823 22 6 2.7531 -3.8957 -7.5889 23 7 3.8697 -3.2181 -7.7521 24 14 1.3474 -3.6853 -8.8010 25 1 0.1452 -3.1900 -8.0837 26 1 1.7379 -2.7057 -9.8467 27 1 1.0415 -4.9923 -9.4360 28 6 2.5195 -5.4349 -2.0379 29 6 1.5111 -4.6800 -1.1668 30 1 -0.3633 0.0037 1.0276 31 1 -0.3633 0.8882 -0.5170 32 1 -0.3634 -0.8918 -0.5108 33 1 5.2839 -1.5012 -1.0392 34 1 5.7201 -0.7179 0.4984 35 1 4.8652 -2.2790 0.5061 36 1 1.0704 -2.5092 -2.9519 37 1 2.4030 -1.5481 -2.2607 38 1 4.0204 -3.3103 -2.8212 39 1 3.1000 -2.8851 -4.2850 40 1 1.5821 -4.8142 -3.8757 41 1 5.0700 -4.6734 -3.0132 42 1 5.1733 -6.4593 -3.1516 43 1 6.0786 -6.3464 -5.3829 44 1 6.8283 -4.8917 -4.6440 45 1 5.3300 -4.6090 -6.8780 46 1 5.1474 -3.4268 -5.5474 47 1 3.9624 -2.6093 -8.5014 48 1 3.5057 -5.3883 -1.5759 49 1 2.2107 -6.4759 -2.1331 50 1 1.5409 -5.0723 -0.1503 51 1 0.5084 -4.8019 -1.5764 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004336779.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:25 Heat of formation + Delta-G solvation = 42.948270 kcal Electronic energy + Delta-G solvation = -32713.095318 eV Core-core repulsion = 28616.110915 eV Total energy + Delta-G solvation = -4096.984403 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.98271 -40.17013 -38.44904 -36.36144 -34.74334 -33.77808 -33.00504 -32.16538 -30.87758 -29.38371 -28.96731 -28.37478 -27.55372 -25.13353 -24.54252 -23.43858 -22.90424 -21.33460 -20.55278 -20.06799 -19.45181 -18.42673 -17.93961 -17.52825 -16.72612 -16.43454 -15.95681 -15.19213 -15.07092 -14.71046 -14.30855 -14.05898 -13.95432 -13.86393 -13.68680 -13.52625 -13.34281 -13.16167 -12.98579 -12.89822 -12.66935 -12.54963 -12.17758 -12.12818 -11.88687 -11.51949 -11.31999 -11.23489 -11.00537 -10.96895 -10.82933 -10.51723 -10.22981 -10.20951 -10.11716 -9.96877 -9.88099 -9.73226 -9.61820 -9.53080 -9.37906 -8.64458 -8.56707 -6.79496 -5.77442 -3.12241 1.19423 1.78744 2.33270 2.68586 3.10687 3.35746 3.41393 3.42136 3.93004 4.10302 4.45280 4.49972 4.76797 4.98335 5.03082 5.06897 5.18953 5.20091 5.25397 5.27013 5.32467 5.38319 5.39991 5.42997 5.48997 5.54113 5.62296 5.67166 5.70960 5.75934 5.80944 5.84665 5.89297 5.94029 6.13131 6.15091 6.25280 6.33641 6.42882 6.46707 6.55768 6.60499 6.72823 6.90432 6.98947 7.10716 7.34367 7.52583 7.59929 7.78064 8.04072 8.09931 8.26519 9.18046 9.79500 10.48880 11.34355 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011247 B = 0.003594 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.932433 B = 7789.078570 C = 8378.067387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.053 3.947 3 N -0.356 5.356 4 O 0.096 5.904 5 C 0.019 3.981 6 C -0.080 4.080 7 C -0.245 4.245 8 C 0.599 3.401 9 O -0.538 6.538 10 N -0.592 5.592 11 C 0.107 3.893 12 C -0.115 4.115 13 C -0.092 4.092 14 C 0.167 3.833 15 H 0.031 0.969 16 C -0.127 4.127 17 C -0.151 4.151 18 C 0.175 3.825 19 N -0.593 5.593 20 C -0.225 4.225 21 H 0.072 0.928 22 C -0.002 4.002 23 N -0.917 5.917 24 Si 0.905 3.095 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.128 4.128 29 C 0.113 3.887 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.068 0.932 46 H 0.024 0.976 47 H 0.253 0.747 48 H 0.065 0.935 49 H 0.071 0.929 50 H 0.088 0.912 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.162 1.786 14.562 14.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.109 4.109 3 N -0.063 5.063 4 O 0.034 5.966 5 C -0.044 4.044 6 C -0.137 4.137 7 C -0.252 4.252 8 C 0.385 3.615 9 O -0.415 6.415 10 N -0.324 5.324 11 C -0.015 4.015 12 C -0.153 4.153 13 C -0.113 4.113 14 C 0.059 3.941 15 H 0.049 0.951 16 C -0.165 4.165 17 C -0.189 4.189 18 C 0.050 3.950 19 N -0.317 5.317 20 C -0.353 4.353 21 H 0.090 0.910 22 C -0.199 4.199 23 N -0.564 5.564 24 Si 0.735 3.265 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.167 4.167 29 C -0.009 4.009 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.117 0.883 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.042 0.958 47 H 0.063 0.937 48 H 0.083 0.917 49 H 0.090 0.910 50 H 0.106 0.894 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.457 2.905 14.876 15.164 hybrid contribution -0.918 -0.506 -0.805 1.322 sum -1.375 2.399 14.070 14.340 Atomic orbital electron populations 1.20206 0.85263 1.04157 1.03753 1.24714 0.98528 0.86535 1.01129 1.73600 0.89157 1.23349 1.20187 1.84526 1.21449 1.22602 1.67996 1.24610 0.97425 0.83664 0.98721 1.20494 0.88946 0.99274 1.05033 1.21845 0.92892 0.95345 1.15156 1.16912 0.76904 0.83930 0.83707 1.90788 1.51738 1.68124 1.30889 1.48136 1.67475 1.10991 1.05840 1.21998 1.00779 0.95783 0.82953 1.21941 0.96705 0.95872 1.00810 1.21580 1.01187 0.94969 0.93577 1.20923 0.92341 0.94680 0.86145 0.95127 1.22648 0.96075 1.00299 0.97445 1.23016 0.97746 1.00750 0.97418 1.21391 0.82482 0.93562 0.97600 1.44480 1.06159 1.68445 1.12567 1.18873 0.94121 1.18865 1.03488 0.91045 1.24830 0.97351 0.98126 0.99598 1.69915 1.24736 1.30237 1.31514 0.86319 0.81760 0.77486 0.80903 1.21219 1.21675 1.21223 1.21996 0.99141 0.99191 0.96354 1.21681 0.98377 0.79172 1.01656 0.89722 0.89856 0.89917 0.88300 0.89099 0.88804 0.91097 0.90810 0.92376 0.88349 0.91267 0.91670 0.92779 0.92590 0.92688 0.91409 0.95833 0.93701 0.91670 0.91005 0.89367 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.49 36.01 0.38 -0.39 16 2 C 0.05 0.69 7.59 -79.77 -0.61 0.09 16 3 N -0.36 -4.92 12.01 34.78 0.42 -4.51 16 4 O 0.10 1.24 11.06 18.65 0.21 1.44 16 5 C 0.02 0.23 7.45 -34.63 -0.26 -0.03 16 6 C -0.08 -0.69 10.33 36.00 0.37 -0.32 16 7 C -0.25 -3.29 4.22 -102.89 -0.43 -3.72 16 8 C 0.60 8.67 7.49 -12.54 -0.09 8.58 16 9 O -0.54 -9.22 16.52 5.27 0.09 -9.13 16 10 N -0.59 -7.94 2.97 -173.80 -0.52 -8.45 16 11 C 0.11 1.48 6.37 -3.49 -0.02 1.45 16 12 C -0.12 -1.82 4.95 -26.38 -0.13 -1.95 16 13 C -0.09 -1.46 1.91 -90.57 -0.17 -1.64 16 14 C 0.17 3.04 2.95 -66.95 -0.20 2.85 16 15 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 16 C -0.13 -2.01 5.22 -24.90 -0.13 -2.14 16 17 C -0.15 -2.65 7.08 -24.59 -0.17 -2.82 16 18 C 0.17 3.90 5.42 -2.53 -0.01 3.88 16 19 N -0.59 -13.49 2.28 -162.58 -0.37 -13.86 16 20 C -0.22 -5.73 9.84 -15.06 -0.15 -5.88 16 21 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 22 C 0.00 -0.06 5.47 -17.43 -0.10 -0.15 16 23 N -0.92 -25.31 10.56 55.49 0.59 -24.73 16 24 Si 0.90 21.09 29.55 -169.99 -5.02 16.07 16 25 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 C -0.13 -1.65 5.10 -26.63 -0.14 -1.78 16 29 C 0.11 1.42 6.43 -3.73 -0.02 1.40 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.83 8.11 -51.93 -0.42 0.41 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 1.00 6.26 -51.93 -0.33 0.68 16 38 H 0.06 0.88 6.13 -51.93 -0.32 0.56 16 39 H 0.10 1.96 7.53 -51.93 -0.39 1.57 16 40 H 0.07 1.22 8.04 -51.93 -0.42 0.81 16 41 H 0.06 0.98 5.49 -51.93 -0.29 0.69 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.07 1.74 6.91 -51.93 -0.36 1.38 16 46 H 0.02 0.57 8.06 -51.93 -0.42 0.15 16 47 H 0.25 6.89 8.31 -40.82 -0.34 6.56 16 48 H 0.06 0.84 7.11 -51.93 -0.37 0.47 16 49 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.09 1.13 7.00 -51.93 -0.36 0.77 16 51 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 399.05 15.07 6.01 6.01 Total: -1.00 -30.02 399.05 -8.77 -38.79 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -8.29 Total: 0.94 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -1.89 Total: -2.57 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.12 Total: -51.55 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.29 Total: -7.69 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.02 -8.77 -38.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004336779.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.739 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds