Wall clock time and date at job start Wed Apr 1 2020 04:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30008 * 127.33848 * 2 1 4 4 O 1.20659 * 112.30125 * 180.29206 * 3 2 1 5 5 C 1.33492 * 113.15827 * 359.69020 * 4 3 2 6 6 C 1.50698 * 126.83234 * 179.97438 * 5 4 3 7 7 C 1.37364 * 106.33983 * 359.97438 * 5 4 3 8 8 C 1.47399 * 128.56600 * 179.97438 * 7 5 4 9 9 O 1.21609 * 119.99522 * 89.99786 * 8 7 5 10 10 N 1.34766 * 120.00374 * 270.00587 * 8 7 5 11 11 C 1.46926 * 120.62976 * 359.71914 * 10 8 7 12 12 C 1.53625 * 108.54633 * 126.36929 * 11 10 8 13 13 C 1.53043 * 109.23940 * 54.85674 * 12 11 10 14 14 C 1.52999 * 109.44915 * 178.50079 * 13 12 11 15 15 H 1.08999 * 109.87552 * 181.02218 * 14 13 12 16 16 C 1.54328 * 109.88576 * 59.84603 * 14 13 12 17 17 C 1.55152 * 102.94338 * 218.39431 * 16 14 13 18 18 C 1.54908 * 101.58380 * 35.50107 * 17 16 14 19 19 N 1.47022 * 109.88313 * 302.04013 * 14 13 12 20 20 C 1.36940 * 125.64529 * 298.39930 * 19 14 13 21 21 H 1.07997 * 119.99778 * 345.67913 * 20 19 14 22 22 C 1.38810 * 119.99810 * 165.69132 * 20 19 14 23 23 N 1.31622 * 120.00559 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99865 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47455 * 59.99820 * 24 22 20 26 26 H 1.48506 * 109.47078 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47073 * 299.99473 * 24 22 20 28 28 C 1.53047 * 109.53884 * 298.51043 * 13 12 11 29 29 C 1.46925 * 120.63234 * 179.97438 * 10 8 7 30 30 H 1.08994 * 109.47217 * 270.20480 * 1 2 3 31 31 H 1.09004 * 109.46880 * 30.20073 * 1 2 3 32 32 H 1.09007 * 109.47608 * 150.19759 * 1 2 3 33 33 H 1.08999 * 109.47109 * 270.02533 * 6 5 4 34 34 H 1.09000 * 109.46793 * 30.02382 * 6 5 4 35 35 H 1.08997 * 109.47125 * 150.02113 * 6 5 4 36 36 H 1.09006 * 109.58622 * 246.20134 * 11 10 8 37 37 H 1.09001 * 109.58652 * 6.62579 * 11 10 8 38 38 H 1.08996 * 109.63691 * 294.86656 * 12 11 10 39 39 H 1.08994 * 109.43292 * 174.71790 * 12 11 10 40 40 H 1.08996 * 109.46636 * 58.53240 * 13 12 11 41 41 H 1.09002 * 110.71655 * 336.76015 * 16 14 13 42 42 H 1.09005 * 110.71655 * 100.02541 * 16 14 13 43 43 H 1.09006 * 111.00270 * 277.42156 * 17 16 14 44 44 H 1.09002 * 111.00258 * 153.58030 * 17 16 14 45 45 H 1.08997 * 110.36312 * 204.15103 * 18 17 16 46 46 H 1.08998 * 110.46044 * 81.87984 * 18 17 16 47 47 H 0.96993 * 120.00234 * 180.02562 * 23 22 20 48 48 H 1.09005 * 109.49683 * 301.41768 * 28 13 12 49 49 H 1.08997 * 109.49824 * 181.31788 * 28 13 12 50 50 H 1.09003 * 109.58620 * 353.36660 * 29 10 8 51 51 H 1.08994 * 109.58814 * 113.65378 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0336 0.0000 4 8 3.4608 0.7206 -0.0057 5 6 3.6494 -0.6009 -0.0039 6 6 4.9711 -1.3249 -0.0101 7 6 2.3991 -1.1697 0.0047 8 6 2.0399 -2.5993 0.0095 9 8 1.8982 -3.1870 1.0646 10 7 1.8687 -3.2550 -1.1554 11 6 2.0306 -2.5570 -2.4381 12 6 3.0391 -3.3371 -3.2950 13 6 2.5740 -4.7894 -3.4245 14 6 3.5555 -5.5619 -4.3081 15 1 3.2209 -6.5932 -4.4198 16 6 4.9649 -5.5290 -3.6802 17 6 5.8921 -5.3797 -4.9151 18 6 5.0394 -4.4722 -5.8365 19 7 3.6508 -4.9213 -5.6280 20 6 2.6201 -4.7667 -6.5163 21 1 1.7038 -5.3225 -6.3823 22 6 2.7531 -3.8957 -7.5889 23 7 3.8697 -3.2181 -7.7521 24 14 1.3474 -3.6853 -8.8010 25 1 0.1452 -3.1900 -8.0837 26 1 1.7379 -2.7057 -9.8467 27 1 1.0415 -4.9923 -9.4360 28 6 2.5195 -5.4349 -2.0379 29 6 1.5111 -4.6800 -1.1668 30 1 -0.3633 0.0037 1.0276 31 1 -0.3633 0.8882 -0.5170 32 1 -0.3634 -0.8918 -0.5108 33 1 5.2839 -1.5012 -1.0392 34 1 5.7201 -0.7179 0.4984 35 1 4.8652 -2.2790 0.5061 36 1 1.0704 -2.5092 -2.9519 37 1 2.4030 -1.5481 -2.2607 38 1 4.0204 -3.3103 -2.8212 39 1 3.1000 -2.8851 -4.2850 40 1 1.5821 -4.8142 -3.8757 41 1 5.0700 -4.6734 -3.0132 42 1 5.1733 -6.4593 -3.1516 43 1 6.0786 -6.3464 -5.3829 44 1 6.8283 -4.8917 -4.6440 45 1 5.3300 -4.6090 -6.8780 46 1 5.1474 -3.4268 -5.5474 47 1 3.9624 -2.6093 -8.5014 48 1 3.5057 -5.3883 -1.5759 49 1 2.2107 -6.4759 -2.1331 50 1 1.5409 -5.0723 -0.1503 51 1 0.5084 -4.8019 -1.5764 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004336779.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:24 Heat of formation + Delta-G solvation = 27.857943 kcal Electronic energy + Delta-G solvation = -32713.749684 eV Core-core repulsion = 28616.110915 eV Total energy + Delta-G solvation = -4097.638769 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.95831 -41.34805 -39.84588 -37.70549 -35.71226 -34.79212 -34.54839 -33.62965 -32.02808 -31.13828 -29.85262 -29.45227 -28.70602 -26.57224 -26.06070 -24.69488 -24.06845 -22.57348 -21.83282 -21.39849 -20.67847 -19.65740 -19.01129 -18.70498 -18.35239 -17.60021 -17.06511 -16.75194 -16.34480 -16.17116 -15.70554 -15.35033 -15.30975 -14.97282 -14.62183 -14.43418 -14.38701 -14.16407 -14.01472 -13.91303 -13.81387 -13.59592 -13.51535 -13.43724 -13.32015 -13.00792 -12.79939 -12.74999 -12.59335 -12.21041 -12.12966 -12.04086 -11.80400 -11.76870 -11.46530 -11.34954 -11.20408 -11.13586 -10.96156 -10.86821 -10.57532 -10.37747 -9.76111 -8.67823 -7.78382 -5.12058 0.25359 0.80846 1.22467 1.48193 1.48459 1.54569 1.71264 2.09559 2.54060 2.99820 3.20751 3.40464 3.49020 3.70697 3.80699 3.86679 3.96814 4.15556 4.19081 4.21226 4.24906 4.27984 4.37208 4.40926 4.44930 4.51594 4.54844 4.56572 4.60004 4.65338 4.72804 4.80521 4.83807 4.91545 4.95326 5.01726 5.05275 5.08423 5.11822 5.14670 5.24460 5.30368 5.35519 5.56005 5.57919 5.67762 5.73905 5.76617 5.88423 6.21533 6.34007 6.92642 7.14388 7.20457 7.90370 8.57630 9.32364 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011247 B = 0.003594 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.932433 B = 7789.078570 C = 8378.067387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.049 3.951 3 N -0.377 5.377 4 O 0.090 5.910 5 C 0.030 3.970 6 C -0.081 4.081 7 C -0.273 4.273 8 C 0.608 3.392 9 O -0.565 6.565 10 N -0.586 5.586 11 C 0.120 3.880 12 C -0.103 4.103 13 C -0.084 4.084 14 C 0.158 3.842 15 H 0.028 0.972 16 C -0.114 4.114 17 C -0.139 4.139 18 C 0.180 3.820 19 N -0.608 5.608 20 C -0.222 4.222 21 H 0.072 0.928 22 C -0.056 4.056 23 N -0.945 5.945 24 Si 0.959 3.041 25 H -0.279 1.279 26 H -0.300 1.300 27 H -0.282 1.282 28 C -0.115 4.115 29 C 0.113 3.887 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.057 0.943 44 H 0.078 0.922 45 H 0.025 0.975 46 H -0.001 1.001 47 H 0.243 0.757 48 H 0.074 0.926 49 H 0.088 0.912 50 H 0.092 0.908 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.092 0.754 16.533 16.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 N -0.086 5.086 4 O 0.030 5.970 5 C -0.033 4.033 6 C -0.138 4.138 7 C -0.280 4.280 8 C 0.395 3.605 9 O -0.445 6.445 10 N -0.318 5.318 11 C -0.003 4.003 12 C -0.141 4.141 13 C -0.104 4.104 14 C 0.052 3.948 15 H 0.046 0.954 16 C -0.151 4.151 17 C -0.178 4.178 18 C 0.055 3.945 19 N -0.332 5.332 20 C -0.351 4.351 21 H 0.090 0.910 22 C -0.250 4.250 23 N -0.594 5.594 24 Si 0.789 3.211 25 H -0.206 1.206 26 H -0.226 1.226 27 H -0.209 1.209 28 C -0.154 4.154 29 C -0.009 4.009 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.126 0.874 34 H 0.134 0.866 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.076 0.924 44 H 0.097 0.903 45 H 0.043 0.957 46 H 0.017 0.983 47 H 0.053 0.947 48 H 0.092 0.908 49 H 0.107 0.893 50 H 0.110 0.890 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.390 1.844 16.867 16.972 hybrid contribution -0.928 -0.228 -1.414 1.707 sum -1.318 1.616 15.453 15.593 Atomic orbital electron populations 1.20331 0.83644 1.04816 1.04682 1.25172 0.99703 0.86238 1.00184 1.73590 0.89563 1.23969 1.21474 1.84502 1.21239 1.23117 1.68111 1.25201 0.98310 0.83261 0.96541 1.20693 0.87855 0.99326 1.05913 1.21875 0.93793 0.95017 1.17330 1.16925 0.76172 0.84114 0.83299 1.90772 1.53101 1.68852 1.31735 1.48105 1.66988 1.11353 1.05312 1.21791 1.00069 0.95641 0.82801 1.21732 0.97858 0.95791 0.98740 1.21412 0.99175 0.94868 0.94975 1.21159 0.94817 0.94150 0.84687 0.95414 1.22624 0.93362 1.02454 0.96702 1.22890 0.98217 0.99686 0.96969 1.21149 0.83521 0.93487 0.96327 1.44680 1.05838 1.68352 1.14359 1.19139 0.94617 1.17769 1.03610 0.90985 1.25456 0.99213 0.98775 1.01517 1.70113 1.26290 1.31204 1.31814 0.85442 0.79644 0.77085 0.78918 1.20556 1.22619 1.20853 1.21889 0.99849 0.99742 0.93899 1.21760 0.98774 0.78485 1.01843 0.88589 0.88776 0.89640 0.87388 0.86633 0.88641 0.91310 0.90524 0.91397 0.92876 0.93377 0.90448 0.89648 0.92419 0.90306 0.95650 0.98344 0.94727 0.90752 0.89319 0.88953 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 10.49 71.24 0.75 -0.72 16 2 C 0.05 1.24 7.59 45.16 0.34 1.58 16 3 N -0.38 -10.16 12.01 -44.79 -0.54 -10.70 16 4 O 0.09 2.22 11.06 77.00 0.85 3.07 16 5 C 0.03 0.68 7.45 25.48 0.19 0.87 16 6 C -0.08 -1.19 10.33 71.24 0.74 -0.45 16 7 C -0.27 -6.97 4.22 -18.74 -0.08 -7.05 16 8 C 0.61 16.54 7.49 86.66 0.65 17.19 16 9 O -0.56 -18.40 16.52 -4.06 -0.07 -18.47 16 10 N -0.59 -14.59 2.97 -822.05 -2.44 -17.03 16 11 C 0.12 3.17 6.37 86.51 0.55 3.72 16 12 C -0.10 -3.17 4.95 30.82 0.15 -3.02 16 13 C -0.08 -2.53 1.91 -10.76 -0.02 -2.55 16 14 C 0.16 5.53 2.95 45.34 0.13 5.66 16 15 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 16 C -0.11 -3.24 5.22 31.78 0.17 -3.08 16 17 C -0.14 -4.64 7.08 31.98 0.23 -4.41 16 18 C 0.18 8.22 5.42 86.86 0.47 8.69 16 19 N -0.61 -27.96 2.28 -668.27 -1.52 -29.49 16 20 C -0.22 -11.49 9.84 84.03 0.83 -10.67 16 21 H 0.07 3.65 7.83 -2.91 -0.02 3.62 16 22 C -0.06 -3.03 5.47 84.86 0.46 -2.57 16 23 N -0.95 -54.34 10.56 21.65 0.23 -54.11 16 24 Si 0.96 44.29 29.55 68.60 2.03 46.32 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 27 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 28 C -0.12 -2.60 5.10 30.66 0.16 -2.44 16 29 C 0.11 2.55 6.43 86.35 0.55 3.10 16 30 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.09 1.43 8.11 -2.39 -0.02 1.41 16 36 H 0.07 1.87 8.14 -2.38 -0.02 1.86 16 37 H 0.08 2.02 6.26 -2.39 -0.01 2.00 16 38 H 0.07 1.93 6.13 -2.39 -0.01 1.92 16 39 H 0.05 2.16 7.53 -2.39 -0.02 2.15 16 40 H 0.05 1.66 8.04 -2.39 -0.02 1.64 16 41 H 0.08 2.04 5.49 -2.39 -0.01 2.02 16 42 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 44 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.03 1.35 6.91 -2.39 -0.02 1.33 16 46 H 0.00 -0.07 8.06 -2.39 -0.02 -0.09 16 47 H 0.24 13.88 8.31 -92.71 -0.77 13.11 16 48 H 0.07 1.59 7.11 -2.38 -0.02 1.58 16 49 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.09 2.11 7.00 -2.39 -0.02 2.09 16 51 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -67.23 399.05 5.74 -61.49 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.93 Total: 15.04 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 6.27 Total: 3.86 kcal Atomic # 7 Polarization: -107.05 SS G_CDS: -4.27 Total: -111.32 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.78 Total: -15.39 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -67.23 5.74 -61.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004336779.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.350 kcal (2) G-P(sol) polarization free energy of solvation -67.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds