Wall clock time and date at job start Wed Apr 1 2020 05:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29932 * 125.38145 * 2 1 4 4 C 1.36066 * 108.48059 * 180.02562 * 3 2 1 5 5 C 1.47419 * 126.45193 * 180.02562 * 4 3 2 6 6 O 1.21606 * 120.00242 * 173.65709 * 5 4 3 7 7 N 1.34772 * 119.99588 * 353.65661 * 5 4 3 8 8 C 1.46931 * 120.62715 * 174.05210 * 7 5 4 9 9 C 1.53195 * 108.77378 * 126.41406 * 8 7 5 10 10 C 1.53044 * 109.31045 * 54.63572 * 9 8 7 11 11 C 1.53008 * 109.45729 * 178.61401 * 10 9 8 12 12 H 1.09000 * 109.87059 * 172.72426 * 11 10 9 13 13 C 1.54326 * 109.88225 * 51.54875 * 11 10 9 14 14 C 1.55154 * 102.93940 * 218.38986 * 13 11 10 15 15 C 1.54903 * 101.58509 * 35.50435 * 14 13 11 16 16 N 1.47023 * 109.88263 * 293.74082 * 11 10 9 17 17 C 1.36935 * 125.64949 * 298.39482 * 16 11 10 18 18 H 1.08002 * 119.99735 * 343.74963 * 17 16 11 19 19 C 1.38806 * 120.00203 * 163.74614 * 17 16 11 20 20 N 1.31622 * 120.00287 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00153 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46971 * 90.00005 * 21 19 17 23 23 H 1.48497 * 109.47262 * 209.99899 * 21 19 17 24 24 H 1.48496 * 109.47063 * 329.99935 * 21 19 17 25 25 C 1.53038 * 109.53903 * 298.63369 * 10 9 8 26 26 C 1.46922 * 120.63487 * 354.07516 * 7 5 4 27 27 C 1.36096 * 107.10241 * 0.26089 * 4 3 2 28 28 C 1.50702 * 126.52853 * 179.74521 * 27 4 3 29 29 O 1.34057 * 125.37431 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47215 * 89.99987 * 1 2 3 31 31 H 1.09000 * 109.47388 * 210.00122 * 1 2 3 32 32 H 1.08995 * 109.46921 * 330.00086 * 1 2 3 33 33 H 1.08997 * 109.58630 * 6.63227 * 8 7 5 34 34 H 1.09003 * 109.70527 * 246.27176 * 8 7 5 35 35 H 1.09002 * 109.49529 * 174.58581 * 9 8 7 36 36 H 1.08999 * 109.49870 * 294.68421 * 9 8 7 37 37 H 1.08997 * 109.46060 * 58.66056 * 10 9 8 38 38 H 1.09003 * 110.72030 * 336.75342 * 13 11 10 39 39 H 1.08999 * 110.71604 * 100.02324 * 13 11 10 40 40 H 1.09006 * 111.00162 * 277.42391 * 14 13 11 41 41 H 1.09000 * 111.00250 * 153.58310 * 14 13 11 42 42 H 1.09002 * 110.36422 * 204.15401 * 15 14 13 43 43 H 1.09001 * 110.46439 * 81.87370 * 15 14 13 44 44 H 0.96989 * 120.00198 * 180.02562 * 20 19 17 45 45 H 1.09005 * 109.49523 * 301.41394 * 25 10 9 46 46 H 1.09004 * 109.49623 * 181.31982 * 25 10 9 47 47 H 1.08998 * 109.58831 * 353.37897 * 26 7 5 48 48 H 1.09008 * 109.58508 * 113.79676 * 26 7 5 49 49 H 1.09002 * 109.47087 * 89.99454 * 28 27 4 50 50 H 1.08991 * 109.46865 * 209.99899 * 28 27 4 51 51 H 1.09003 * 109.46698 * 329.99523 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 -0.0006 5 6 4.7440 1.5437 -0.0003 6 8 5.8566 1.0668 0.1155 7 7 4.5921 2.8767 -0.1283 8 6 5.7459 3.7773 0.0001 9 6 5.8163 4.6689 -1.2436 10 6 4.4769 5.3858 -1.4288 11 6 4.5547 6.3037 -2.6505 12 1 3.5700 6.7186 -2.8655 13 6 5.0720 5.5118 -3.8699 14 6 5.9914 6.5367 -4.5852 15 6 6.6049 7.2964 -3.3827 16 7 5.5114 7.3913 -2.3986 17 6 5.4048 8.3356 -1.4126 18 1 4.4601 8.4898 -0.9125 19 6 6.5109 9.0945 -1.0558 20 7 7.6625 8.9062 -1.6649 21 14 6.3657 10.3821 0.2897 22 1 6.6775 9.7630 1.6030 23 1 7.3222 11.4864 0.0235 24 1 4.9819 10.9205 0.3123 25 6 3.3677 4.3523 -1.6375 26 6 3.2697 3.4570 -0.3983 27 6 3.5660 -0.6972 -0.0069 28 6 4.7801 -1.5899 -0.0152 29 8 2.2830 -1.0931 -0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 6.6606 3.1900 0.0809 34 1 5.6306 4.3981 0.8887 35 1 6.6093 5.4062 -1.1183 36 1 6.0246 4.0551 -2.1200 37 1 4.2574 5.9800 -0.5419 38 1 5.6423 4.6398 -3.5498 39 1 4.2458 5.2173 -4.5171 40 1 5.4102 7.2088 -5.2167 41 1 6.7646 6.0309 -5.1635 42 1 6.9281 8.2917 -3.6878 43 1 7.4428 6.7374 -2.9661 44 1 8.4354 9.4362 -1.4154 45 1 3.5991 3.7415 -2.5102 46 1 2.4179 4.8642 -1.7927 47 1 2.5504 2.6585 -0.5803 48 1 2.9498 4.0515 0.4575 49 1 5.0765 -1.8097 1.0105 50 1 4.5438 -2.5197 -0.5324 51 1 5.5982 -1.0857 -0.5297 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004585605.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:14 Heat of formation + Delta-G solvation = 17.530198 kcal Electronic energy + Delta-G solvation = -32073.825506 eV Core-core repulsion = 27975.738893 eV Total energy + Delta-G solvation = -4098.086614 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.71154 -39.95612 -38.32450 -36.32128 -35.22320 -33.32948 -32.91712 -32.06133 -30.75236 -30.34605 -29.31411 -27.77767 -26.40066 -24.65603 -24.04557 -23.35187 -22.72110 -21.63148 -21.02014 -20.04000 -19.37636 -18.33782 -17.32773 -17.31506 -16.62708 -16.07212 -15.78120 -15.08127 -14.88695 -14.59980 -14.51008 -14.25430 -13.87946 -13.84006 -13.70856 -13.58345 -13.24011 -13.08295 -13.03501 -12.88568 -12.65088 -12.45170 -12.09550 -12.05757 -11.80471 -11.48593 -11.41675 -11.17297 -10.92488 -10.89651 -10.74396 -10.53419 -10.27569 -10.12024 -10.05564 -9.86638 -9.73023 -9.59283 -9.35383 -9.29544 -9.02299 -8.52445 -8.34510 -6.67762 -5.69885 -3.04231 0.89730 1.77882 2.20523 3.06180 3.25586 3.41588 3.47497 3.48617 3.63345 4.36226 4.49140 4.53268 4.76851 4.96250 5.05150 5.09771 5.17854 5.22274 5.29026 5.33498 5.39149 5.52876 5.56303 5.57602 5.61060 5.65110 5.77345 5.78660 5.80352 5.85812 5.98891 6.02320 6.07232 6.28520 6.31940 6.39211 6.43491 6.45766 6.59882 6.66025 6.68647 6.72945 6.84703 7.04738 7.15937 7.22913 7.23488 7.58990 7.60074 7.70714 7.85751 8.20486 8.35455 9.26468 9.88102 10.59009 11.42828 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015800 B = 0.002764 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.677934 B =10127.221165 C =10210.410880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.190 3.810 3 N -0.453 5.453 4 C -0.066 4.066 5 C 0.597 3.403 6 O -0.545 6.545 7 N -0.585 5.585 8 C 0.110 3.890 9 C -0.117 4.117 10 C -0.094 4.094 11 C 0.167 3.833 12 H 0.030 0.970 13 C -0.131 4.131 14 C -0.150 4.150 15 C 0.175 3.825 16 N -0.593 5.593 17 C -0.223 4.223 18 H 0.072 0.928 19 C -0.003 4.003 20 N -0.916 5.916 21 Si 0.905 3.095 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.126 4.126 26 C 0.079 3.921 27 C 0.036 3.964 28 C -0.073 4.073 29 O -0.198 6.198 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.026 0.974 44 H 0.252 0.748 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.133 0.867 48 H 0.061 0.939 49 H 0.091 0.909 50 H 0.079 0.921 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.688 -20.515 1.051 24.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.018 4.018 3 N -0.184 5.184 4 C -0.185 4.185 5 C 0.384 3.616 6 O -0.424 6.424 7 N -0.315 5.315 8 C -0.011 4.011 9 C -0.155 4.155 10 C -0.115 4.115 11 C 0.060 3.940 12 H 0.047 0.953 13 C -0.169 4.169 14 C -0.189 4.189 15 C 0.051 3.949 16 N -0.317 5.317 17 C -0.352 4.352 18 H 0.089 0.911 19 C -0.200 4.200 20 N -0.563 5.563 21 Si 0.736 3.264 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.165 4.165 26 C -0.044 4.044 27 C -0.020 4.020 28 C -0.129 4.129 29 O -0.086 6.086 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.122 0.878 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.044 0.956 44 H 0.062 0.938 45 H 0.077 0.923 46 H 0.087 0.913 47 H 0.150 0.850 48 H 0.079 0.921 49 H 0.110 0.890 50 H 0.097 0.903 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.184 -19.950 1.213 23.408 hybrid contribution 0.111 0.254 0.817 0.863 sum -12.073 -19.695 2.029 23.190 Atomic orbital electron populations 1.20323 0.80874 1.05371 1.04971 1.26416 0.96560 0.78495 1.00352 1.70600 1.00979 1.28504 1.18274 1.21553 0.92062 0.92232 1.12659 1.16764 0.85972 0.81731 0.77157 1.90756 1.24565 1.74780 1.52255 1.47954 1.10629 1.04835 1.68107 1.21800 0.88306 0.91704 0.99319 1.21915 0.99611 0.98113 0.95866 1.21595 0.93280 0.95391 1.01186 1.20932 0.93474 0.88049 0.91576 0.95250 1.22726 0.98798 0.98377 0.96973 1.23001 0.98606 0.98149 0.99099 1.21356 0.89658 0.98411 0.85523 1.44487 1.23841 1.28726 1.34617 1.18910 0.94707 1.10755 1.10823 0.91056 1.24880 0.95311 1.00574 0.99264 1.69933 1.00323 1.42710 1.43341 0.86232 0.77079 0.81071 0.82066 1.21617 1.21819 1.20750 1.21973 0.99720 0.97516 0.97285 1.22686 0.84307 0.99706 0.97691 1.23697 0.83763 0.94485 1.00084 1.20558 0.90170 0.97551 1.04663 1.84314 1.16440 1.37905 1.69925 0.88659 0.89247 0.87767 0.89527 0.91432 0.88992 0.92222 0.91059 0.91257 0.92951 0.92659 0.92716 0.91827 0.95631 0.93803 0.92316 0.91346 0.85038 0.92108 0.89013 0.90261 0.87063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.27 10.51 36.00 0.38 0.11 16 2 C 0.19 1.84 8.30 -13.08 -0.11 1.73 16 3 N -0.45 -5.63 7.79 -7.65 -0.06 -5.69 16 4 C -0.07 -0.91 6.69 -83.02 -0.56 -1.47 16 5 C 0.60 9.60 7.68 -12.52 -0.10 9.51 16 6 O -0.54 -9.60 14.31 5.27 0.08 -9.52 16 7 N -0.58 -9.32 2.97 -174.04 -0.52 -9.84 16 8 C 0.11 1.87 6.44 -3.71 -0.02 1.84 16 9 C -0.12 -2.15 4.84 -26.61 -0.13 -2.28 16 10 C -0.09 -1.70 1.97 -90.57 -0.18 -1.88 16 11 C 0.17 3.37 2.87 -66.95 -0.19 3.18 16 12 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 13 C -0.13 -2.34 5.49 -24.90 -0.14 -2.48 16 14 C -0.15 -2.88 7.08 -24.59 -0.17 -3.06 16 15 C 0.18 4.21 5.39 -2.53 -0.01 4.20 16 16 N -0.59 -14.55 2.64 -162.57 -0.43 -14.98 16 17 C -0.22 -6.03 9.68 -15.06 -0.15 -6.18 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C 0.00 -0.10 5.47 -17.43 -0.10 -0.19 16 20 N -0.92 -26.54 10.64 55.49 0.59 -25.95 16 21 Si 0.90 21.99 29.55 -169.99 -5.02 16.97 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 25 C -0.13 -1.89 5.20 -26.61 -0.14 -2.03 16 26 C 0.08 1.14 6.13 -3.72 -0.02 1.11 16 27 C 0.04 0.42 7.44 -35.08 -0.26 0.16 16 28 C -0.07 -0.65 9.81 36.01 0.35 -0.30 16 29 O -0.20 -2.08 10.73 6.47 0.07 -2.01 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 1.50 7.00 -51.93 -0.36 1.14 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.09 2.01 7.78 -51.93 -0.40 1.61 16 36 H 0.06 1.08 5.82 -51.93 -0.30 0.78 16 37 H 0.07 1.45 7.81 -51.93 -0.41 1.04 16 38 H 0.07 1.22 5.27 -51.93 -0.27 0.95 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 1.71 7.05 -51.93 -0.37 1.35 16 43 H 0.03 0.67 8.02 -51.93 -0.42 0.25 16 44 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.06 0.88 7.57 -51.93 -0.39 0.49 16 46 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.13 1.81 4.03 -64.12 -0.26 1.55 16 48 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 49 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 50 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.11 1.16 6.64 -51.93 -0.34 0.82 16 LS Contribution 391.76 15.07 5.90 5.90 Total: -1.00 -31.96 391.76 -9.08 -41.04 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -8.15 Total: 2.11 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -1.54 Total: 1.98 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.42 Total: -56.46 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.14 Total: -11.54 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.96 -9.08 -41.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004585605.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.568 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds