Wall clock time and date at job start Wed Apr 1 2020 05:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29932 * 125.38145 * 2 1 4 4 C 1.36066 * 108.48059 * 180.02562 * 3 2 1 5 5 C 1.47419 * 126.45193 * 180.02562 * 4 3 2 6 6 O 1.21606 * 120.00242 * 173.65709 * 5 4 3 7 7 N 1.34772 * 119.99588 * 353.65661 * 5 4 3 8 8 C 1.46931 * 120.62715 * 174.05210 * 7 5 4 9 9 C 1.53195 * 108.77378 * 126.41406 * 8 7 5 10 10 C 1.53044 * 109.31045 * 54.63572 * 9 8 7 11 11 C 1.53008 * 109.45729 * 178.61401 * 10 9 8 12 12 H 1.09000 * 109.87059 * 172.72426 * 11 10 9 13 13 C 1.54326 * 109.88225 * 51.54875 * 11 10 9 14 14 C 1.55154 * 102.93940 * 218.38986 * 13 11 10 15 15 C 1.54903 * 101.58509 * 35.50435 * 14 13 11 16 16 N 1.47023 * 109.88263 * 293.74082 * 11 10 9 17 17 C 1.36935 * 125.64949 * 298.39482 * 16 11 10 18 18 H 1.08002 * 119.99735 * 343.74963 * 17 16 11 19 19 C 1.38806 * 120.00203 * 163.74614 * 17 16 11 20 20 N 1.31622 * 120.00287 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00153 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46971 * 90.00005 * 21 19 17 23 23 H 1.48497 * 109.47262 * 209.99899 * 21 19 17 24 24 H 1.48496 * 109.47063 * 329.99935 * 21 19 17 25 25 C 1.53038 * 109.53903 * 298.63369 * 10 9 8 26 26 C 1.46922 * 120.63487 * 354.07516 * 7 5 4 27 27 C 1.36096 * 107.10241 * 0.26089 * 4 3 2 28 28 C 1.50702 * 126.52853 * 179.74521 * 27 4 3 29 29 O 1.34057 * 125.37431 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47215 * 89.99987 * 1 2 3 31 31 H 1.09000 * 109.47388 * 210.00122 * 1 2 3 32 32 H 1.08995 * 109.46921 * 330.00086 * 1 2 3 33 33 H 1.08997 * 109.58630 * 6.63227 * 8 7 5 34 34 H 1.09003 * 109.70527 * 246.27176 * 8 7 5 35 35 H 1.09002 * 109.49529 * 174.58581 * 9 8 7 36 36 H 1.08999 * 109.49870 * 294.68421 * 9 8 7 37 37 H 1.08997 * 109.46060 * 58.66056 * 10 9 8 38 38 H 1.09003 * 110.72030 * 336.75342 * 13 11 10 39 39 H 1.08999 * 110.71604 * 100.02324 * 13 11 10 40 40 H 1.09006 * 111.00162 * 277.42391 * 14 13 11 41 41 H 1.09000 * 111.00250 * 153.58310 * 14 13 11 42 42 H 1.09002 * 110.36422 * 204.15401 * 15 14 13 43 43 H 1.09001 * 110.46439 * 81.87370 * 15 14 13 44 44 H 0.96989 * 120.00198 * 180.02562 * 20 19 17 45 45 H 1.09005 * 109.49523 * 301.41394 * 25 10 9 46 46 H 1.09004 * 109.49623 * 181.31982 * 25 10 9 47 47 H 1.08998 * 109.58831 * 353.37897 * 26 7 5 48 48 H 1.09008 * 109.58508 * 113.79676 * 26 7 5 49 49 H 1.09002 * 109.47087 * 89.99454 * 28 27 4 50 50 H 1.08991 * 109.46865 * 209.99899 * 28 27 4 51 51 H 1.09003 * 109.46698 * 329.99523 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 -0.0006 5 6 4.7440 1.5437 -0.0003 6 8 5.8566 1.0668 0.1155 7 7 4.5921 2.8767 -0.1283 8 6 5.7459 3.7773 0.0001 9 6 5.8163 4.6689 -1.2436 10 6 4.4769 5.3858 -1.4288 11 6 4.5547 6.3037 -2.6505 12 1 3.5700 6.7186 -2.8655 13 6 5.0720 5.5118 -3.8699 14 6 5.9914 6.5367 -4.5852 15 6 6.6049 7.2964 -3.3827 16 7 5.5114 7.3913 -2.3986 17 6 5.4048 8.3356 -1.4126 18 1 4.4601 8.4898 -0.9125 19 6 6.5109 9.0945 -1.0558 20 7 7.6625 8.9062 -1.6649 21 14 6.3657 10.3821 0.2897 22 1 6.6775 9.7630 1.6030 23 1 7.3222 11.4864 0.0235 24 1 4.9819 10.9205 0.3123 25 6 3.3677 4.3523 -1.6375 26 6 3.2697 3.4570 -0.3983 27 6 3.5660 -0.6972 -0.0069 28 6 4.7801 -1.5899 -0.0152 29 8 2.2830 -1.0931 -0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 6.6606 3.1900 0.0809 34 1 5.6306 4.3981 0.8887 35 1 6.6093 5.4062 -1.1183 36 1 6.0246 4.0551 -2.1200 37 1 4.2574 5.9800 -0.5419 38 1 5.6423 4.6398 -3.5498 39 1 4.2458 5.2173 -4.5171 40 1 5.4102 7.2088 -5.2167 41 1 6.7646 6.0309 -5.1635 42 1 6.9281 8.2917 -3.6878 43 1 7.4428 6.7374 -2.9661 44 1 8.4354 9.4362 -1.4154 45 1 3.5991 3.7415 -2.5102 46 1 2.4179 4.8642 -1.7927 47 1 2.5504 2.6585 -0.5803 48 1 2.9498 4.0515 0.4575 49 1 5.0765 -1.8097 1.0105 50 1 4.5438 -2.5197 -0.5324 51 1 5.5982 -1.0857 -0.5297 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004585605.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:13 Heat of formation + Delta-G solvation = -1.715037 kcal Electronic energy + Delta-G solvation = -32074.660042 eV Core-core repulsion = 27975.738893 eV Total energy + Delta-G solvation = -4098.921150 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.54437 -41.26879 -39.84932 -37.78190 -36.12364 -34.70613 -34.07902 -33.68617 -32.05859 -31.22677 -30.92878 -29.26962 -27.42485 -26.50748 -25.35036 -24.65626 -23.79427 -22.71309 -22.33810 -21.76655 -20.63526 -19.75765 -18.67764 -18.39287 -18.13470 -17.21664 -16.94324 -16.73695 -16.38180 -16.12698 -15.74190 -15.44318 -15.30598 -15.08943 -14.67598 -14.46483 -14.39351 -14.26090 -13.99599 -13.90778 -13.67055 -13.54047 -13.53297 -13.35783 -13.11995 -13.00973 -12.82551 -12.78649 -12.66196 -12.35638 -12.18405 -12.04246 -11.93438 -11.72896 -11.66077 -11.50841 -11.35532 -11.21648 -10.92718 -10.62717 -10.56831 -9.95146 -9.58595 -8.69882 -7.82285 -5.16988 -0.00473 0.90683 1.43495 1.45186 1.46147 1.54281 1.89385 2.13082 2.51620 2.83659 3.36687 3.48486 3.58482 3.68215 3.86889 3.94431 4.12112 4.14420 4.19777 4.23571 4.27156 4.31281 4.33863 4.39407 4.51994 4.55762 4.66547 4.68150 4.70732 4.73022 4.77818 4.84505 4.87102 4.89586 5.03657 5.05065 5.09944 5.10625 5.16720 5.20101 5.23329 5.25911 5.41525 5.52912 5.61668 5.64850 5.69590 5.73065 5.82269 6.26424 6.30710 6.49320 6.98367 7.16393 7.85797 8.54748 9.29673 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015800 B = 0.002764 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.677934 B =10127.221165 C =10210.410880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.203 3.797 3 N -0.479 5.479 4 C -0.098 4.098 5 C 0.593 3.407 6 O -0.569 6.569 7 N -0.588 5.588 8 C 0.118 3.882 9 C -0.103 4.103 10 C -0.084 4.084 11 C 0.159 3.841 12 H 0.033 0.967 13 C -0.119 4.119 14 C -0.137 4.137 15 C 0.181 3.819 16 N -0.609 5.609 17 C -0.225 4.225 18 H 0.073 0.927 19 C -0.060 4.060 20 N -0.947 5.947 21 Si 0.966 3.034 22 H -0.290 1.290 23 H -0.297 1.297 24 H -0.270 1.270 25 C -0.114 4.114 26 C 0.082 3.918 27 C 0.044 3.956 28 C -0.072 4.072 29 O -0.195 6.195 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.048 0.952 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.025 0.975 43 H -0.006 1.006 44 H 0.244 0.756 45 H 0.065 0.935 46 H 0.087 0.913 47 H 0.148 0.852 48 H 0.059 0.941 49 H 0.102 0.898 50 H 0.107 0.893 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.963 -22.905 0.611 27.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.005 4.005 3 N -0.209 5.209 4 C -0.216 4.216 5 C 0.382 3.618 6 O -0.449 6.449 7 N -0.319 5.319 8 C -0.004 4.004 9 C -0.141 4.141 10 C -0.105 4.105 11 C 0.053 3.947 12 H 0.051 0.949 13 C -0.156 4.156 14 C -0.176 4.176 15 C 0.056 3.944 16 N -0.333 5.333 17 C -0.355 4.355 18 H 0.091 0.909 19 C -0.254 4.254 20 N -0.595 5.595 21 Si 0.795 3.205 22 H -0.217 1.217 23 H -0.224 1.224 24 H -0.194 1.194 25 C -0.153 4.153 26 C -0.039 4.039 27 C -0.013 4.013 28 C -0.129 4.129 29 O -0.083 6.083 30 H 0.133 0.867 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.044 0.956 43 H 0.012 0.988 44 H 0.054 0.946 45 H 0.084 0.916 46 H 0.106 0.894 47 H 0.165 0.835 48 H 0.077 0.923 49 H 0.120 0.880 50 H 0.126 0.874 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.506 -22.350 0.767 27.213 hybrid contribution 1.048 0.919 0.960 1.692 sum -14.459 -21.431 1.727 25.910 Atomic orbital electron populations 1.20666 0.77268 1.06920 1.06671 1.27434 0.98040 0.77563 0.97447 1.70438 1.00516 1.29793 1.20202 1.21284 0.92011 0.92751 1.15568 1.17105 0.86586 0.81757 0.76363 1.90733 1.25779 1.75179 1.53245 1.47978 1.10570 1.04902 1.68437 1.21550 0.88959 0.91574 0.98322 1.21699 0.98506 0.97209 0.96704 1.21431 0.94295 0.95651 0.99127 1.21166 0.92521 0.87534 0.93452 0.94920 1.22688 0.99472 0.97465 0.96015 1.22876 0.99277 0.98143 0.97264 1.21119 0.89357 0.96544 0.87398 1.44711 1.24538 1.29792 1.34282 1.19204 0.94625 1.10862 1.10771 0.90888 1.25600 0.95237 1.02986 1.01560 1.70137 1.00774 1.43800 1.44819 0.85267 0.77286 0.78593 0.79369 1.21687 1.22398 1.19436 1.21881 0.98993 0.96571 0.97809 1.22781 0.83851 0.99988 0.97299 1.24052 0.84804 0.94102 0.98301 1.20635 0.88675 0.98077 1.05466 1.84364 1.15952 1.38096 1.69894 0.86673 0.86964 0.86895 0.90248 0.91997 0.93297 0.91801 0.93606 0.91031 0.89481 0.91818 0.90509 0.95644 0.98754 0.94648 0.91586 0.89446 0.83501 0.92306 0.87964 0.87408 0.88763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.31 10.51 71.23 0.75 0.44 16 2 C 0.20 3.34 8.30 88.39 0.73 4.07 16 3 N -0.48 -10.90 7.79 -293.03 -2.28 -13.18 16 4 C -0.10 -2.60 6.69 40.41 0.27 -2.33 16 5 C 0.59 18.98 7.68 86.66 0.67 19.64 16 6 O -0.57 -20.31 14.31 -4.05 -0.06 -20.37 16 7 N -0.59 -18.67 2.97 -822.78 -2.45 -21.12 16 8 C 0.12 4.15 6.44 86.36 0.56 4.71 16 9 C -0.10 -3.90 4.84 30.67 0.15 -3.76 16 10 C -0.08 -3.05 1.97 -10.76 -0.02 -3.07 16 11 C 0.16 6.32 2.87 45.34 0.13 6.45 16 12 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 13 C -0.12 -3.99 5.49 31.78 0.17 -3.82 16 14 C -0.14 -5.12 7.08 31.98 0.23 -4.90 16 15 C 0.18 9.02 5.39 86.85 0.47 9.49 16 16 N -0.61 -30.64 2.64 -668.25 -1.76 -32.40 16 17 C -0.23 -12.49 9.68 84.03 0.81 -11.67 16 18 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 19 C -0.06 -3.46 5.47 84.86 0.46 -2.99 16 20 N -0.95 -57.53 10.64 21.65 0.23 -57.30 16 21 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 22 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 24 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 25 C -0.11 -3.18 5.20 30.67 0.16 -3.02 16 26 C 0.08 2.28 6.13 86.36 0.53 2.81 16 27 C 0.04 0.95 7.44 25.19 0.19 1.14 16 28 C -0.07 -1.17 9.81 71.24 0.70 -0.48 16 29 O -0.20 -3.54 10.73 0.23 0.00 -3.54 16 30 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.08 2.88 7.00 -2.39 -0.02 2.87 16 34 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.05 2.27 7.78 -2.39 -0.02 2.26 16 36 H 0.06 2.34 5.82 -2.39 -0.01 2.33 16 37 H 0.05 1.89 7.81 -2.39 -0.02 1.87 16 38 H 0.07 2.39 5.27 -2.39 -0.01 2.38 16 39 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 41 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.03 1.43 7.05 -2.39 -0.02 1.41 16 43 H -0.01 -0.31 8.02 -2.39 -0.02 -0.33 16 44 H 0.24 14.57 8.31 -92.72 -0.77 13.80 16 45 H 0.07 1.79 7.57 -2.38 -0.02 1.77 16 46 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.15 3.74 4.03 -26.46 -0.11 3.64 16 48 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 49 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 51 H 0.09 1.91 6.64 -2.39 -0.02 1.90 16 Total: -1.00 -73.16 391.76 3.50 -69.66 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.84 Total: 17.02 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 6.95 Total: 12.69 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -6.26 Total: -124.00 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.06 Total: -23.91 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -73.16 3.50 -69.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004585605.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.943 kcal (2) G-P(sol) polarization free energy of solvation -73.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds