Wall clock time and date at job start Wed Apr 1 2020 05:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29932 * 125.37909 * 2 1 4 4 C 1.36069 * 108.47633 * 179.97438 * 3 2 1 5 5 C 1.47421 * 126.44735 * 180.02562 * 4 3 2 6 6 O 1.21610 * 120.00163 * 174.55570 * 5 4 3 7 7 N 1.34776 * 119.99740 * 354.55626 * 5 4 3 8 8 C 1.46927 * 120.62636 * 173.62638 * 7 5 4 9 9 C 1.53191 * 108.77822 * 126.66480 * 8 7 5 10 10 C 1.53042 * 109.31175 * 54.63126 * 9 8 7 11 11 C 1.53005 * 109.45838 * 178.61858 * 10 9 8 12 12 H 1.08995 * 109.87318 * 305.22438 * 11 10 9 13 13 C 1.54316 * 109.88377 * 66.40434 * 11 10 9 14 14 C 1.55156 * 102.94498 * 141.61219 * 13 11 10 15 15 C 1.54915 * 101.57713 * 324.49515 * 14 13 11 16 16 N 1.47026 * 109.88070 * 184.21440 * 11 10 9 17 17 C 1.36934 * 125.65220 * 61.67150 * 16 11 10 18 18 H 1.08006 * 119.99816 * 6.71650 * 17 16 11 19 19 C 1.38805 * 120.00244 * 186.71410 * 17 16 11 20 20 N 1.31618 * 119.99970 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00096 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47293 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47507 * 119.99970 * 21 19 17 24 24 H 1.48506 * 109.47005 * 239.99767 * 21 19 17 25 25 C 1.53039 * 109.53917 * 298.63819 * 10 9 8 26 26 C 1.46924 * 120.63574 * 353.89937 * 7 5 4 27 27 C 1.36092 * 107.10346 * 0.25873 * 4 3 2 28 28 C 1.50697 * 126.52516 * 179.74287 * 27 4 3 29 29 O 1.34049 * 125.37874 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.46674 * 90.00246 * 1 2 3 31 31 H 1.08994 * 109.47210 * 210.00066 * 1 2 3 32 32 H 1.08995 * 109.46814 * 330.00551 * 1 2 3 33 33 H 1.08999 * 109.58698 * 246.45051 * 8 7 5 34 34 H 1.09003 * 109.58838 * 6.87484 * 8 7 5 35 35 H 1.09000 * 109.49440 * 294.68561 * 9 8 7 36 36 H 1.09002 * 109.52557 * 174.60077 * 9 8 7 37 37 H 1.09002 * 109.46081 * 58.65923 * 10 9 8 38 38 H 1.09003 * 110.71880 * 259.96846 * 13 11 10 39 39 H 1.09000 * 110.72107 * 23.24350 * 13 11 10 40 40 H 1.09003 * 111.00430 * 206.42347 * 14 13 11 41 41 H 1.08995 * 111.03998 * 82.58314 * 14 13 11 42 42 H 1.08999 * 110.36686 * 278.17200 * 15 14 13 43 43 H 1.08999 * 110.45709 * 155.89591 * 15 14 13 44 44 H 0.96997 * 120.00153 * 180.02562 * 20 19 17 45 45 H 1.09005 * 109.49828 * 301.41321 * 25 10 9 46 46 H 1.08996 * 109.52214 * 181.33797 * 25 10 9 47 47 H 1.09006 * 109.58490 * 353.12909 * 26 7 5 48 48 H 1.09002 * 109.58214 * 113.54600 * 26 7 5 49 49 H 1.08997 * 109.46967 * 90.00179 * 28 27 4 50 50 H 1.09000 * 109.46970 * 209.99632 * 28 27 4 51 51 H 1.09001 * 109.47185 * 330.00173 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2594 1.0594 0.0000 4 6 3.5613 0.6638 0.0006 5 6 4.7440 1.5438 0.0013 6 8 5.8577 1.0656 0.1017 7 7 4.5911 2.8782 -0.1093 8 6 5.7445 3.7778 0.0293 9 6 5.8090 4.6898 -1.1999 10 6 4.4682 5.4081 -1.3682 11 6 4.5403 6.3460 -2.5750 12 1 5.3859 7.0251 -2.4665 13 6 4.6873 5.5224 -3.8717 14 6 3.8044 6.3027 -4.8811 15 6 2.6489 6.7899 -3.9715 16 7 3.2922 7.1153 -2.6856 17 6 2.8080 7.9896 -1.7496 18 1 3.4064 8.2434 -0.8871 19 6 1.5481 8.5498 -1.9094 20 7 0.8190 8.2409 -2.9608 21 14 0.8878 9.7431 -0.6329 22 1 1.8943 9.9228 0.4441 23 1 0.6110 11.0528 -1.2759 24 1 -0.3671 9.2020 -0.0518 25 6 3.3593 4.3769 -1.5895 26 6 3.2670 3.4615 -0.3647 27 6 3.5660 -0.6971 -0.0049 28 6 4.7802 -1.5898 -0.0120 29 8 2.2832 -1.0930 0.0005 30 1 -0.3632 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5137 33 1 5.6294 4.3837 0.9280 34 1 6.6601 3.1903 0.0969 35 1 6.0145 4.0906 -2.0870 36 1 6.6018 5.4258 -1.0663 37 1 4.2514 5.9875 -0.4707 38 1 5.7261 5.5045 -4.2015 39 1 4.3090 4.5099 -3.7305 40 1 3.4327 5.6438 -5.6658 41 1 4.3485 7.1457 -5.3068 42 1 1.9120 5.9980 -3.8374 43 1 2.1785 7.6770 -4.3955 44 1 -0.0613 8.6327 -3.0726 45 1 3.5879 3.7806 -2.4729 46 1 2.4083 4.8898 -1.7329 47 1 2.5479 2.6651 -0.5570 48 1 2.9499 4.0415 0.5020 49 1 5.0757 -1.8092 1.0140 50 1 4.5442 -2.5200 -0.5289 51 1 5.5987 -1.0859 -0.5260 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004585607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:17 Heat of formation + Delta-G solvation = 18.988320 kcal Electronic energy + Delta-G solvation = -32261.294106 eV Core-core repulsion = 28163.270722 eV Total energy + Delta-G solvation = -4098.023385 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.64608 -39.97536 -38.34673 -36.31176 -35.17615 -33.27016 -32.96014 -32.07410 -30.70393 -30.29114 -29.31197 -27.80471 -26.35351 -24.67340 -24.07884 -23.17373 -22.80572 -21.69587 -20.91259 -20.02215 -19.38013 -18.38673 -17.30652 -17.25095 -16.57045 -16.13141 -15.77712 -15.04816 -14.96951 -14.58088 -14.43970 -14.22297 -13.85874 -13.79815 -13.73259 -13.53202 -13.19081 -13.06199 -12.98393 -12.85181 -12.64572 -12.45077 -12.03335 -11.98937 -11.83456 -11.54555 -11.34723 -11.19823 -10.95485 -10.91928 -10.77914 -10.66085 -10.24828 -10.09271 -9.98146 -9.82568 -9.71409 -9.53437 -9.47226 -9.21440 -8.97398 -8.56601 -8.35706 -6.74846 -5.64887 -3.00832 0.94328 1.84670 2.27204 3.05589 3.26901 3.41013 3.47452 3.49116 3.71061 4.40871 4.52518 4.53538 4.83829 5.09364 5.12640 5.15100 5.17971 5.22507 5.24092 5.36835 5.42233 5.52308 5.52527 5.58648 5.65669 5.67874 5.78048 5.78739 5.81169 5.86805 5.93274 5.99536 6.06013 6.25614 6.29957 6.30732 6.44287 6.50490 6.56393 6.66574 6.70631 6.80531 6.84313 7.00592 7.12315 7.22191 7.30432 7.58905 7.63684 7.67510 7.89762 8.18767 8.37442 9.27203 9.88966 10.56430 11.43497 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011873 B = 0.003287 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.816391 B = 8515.145729 C = 9421.369137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.193 3.807 3 N -0.451 5.451 4 C -0.066 4.066 5 C 0.599 3.401 6 O -0.549 6.549 7 N -0.585 5.585 8 C 0.112 3.888 9 C -0.127 4.127 10 C -0.095 4.095 11 C 0.167 3.833 12 H 0.030 0.970 13 C -0.130 4.130 14 C -0.150 4.150 15 C 0.166 3.834 16 N -0.594 5.594 17 C -0.216 4.216 18 H 0.075 0.925 19 C -0.009 4.009 20 N -0.921 5.921 21 Si 0.907 3.093 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.116 4.116 26 C 0.076 3.924 27 C 0.034 3.966 28 C -0.072 4.072 29 O -0.198 6.198 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.016 0.984 43 H 0.086 0.914 44 H 0.250 0.750 45 H 0.055 0.945 46 H 0.090 0.910 47 H 0.134 0.866 48 H 0.061 0.939 49 H 0.090 0.910 50 H 0.078 0.922 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.633 -18.754 4.160 19.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.015 4.015 3 N -0.181 5.181 4 C -0.186 4.186 5 C 0.386 3.614 6 O -0.429 6.429 7 N -0.316 5.316 8 C -0.010 4.010 9 C -0.165 4.165 10 C -0.116 4.116 11 C 0.060 3.940 12 H 0.048 0.952 13 C -0.168 4.168 14 C -0.188 4.188 15 C 0.042 3.958 16 N -0.318 5.318 17 C -0.345 4.345 18 H 0.093 0.907 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.153 4.153 26 C -0.046 4.046 27 C -0.022 4.022 28 C -0.128 4.128 29 O -0.086 6.086 30 H 0.115 0.885 31 H 0.107 0.893 32 H 0.124 0.876 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.034 0.966 43 H 0.104 0.896 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.108 0.892 47 H 0.151 0.849 48 H 0.080 0.920 49 H 0.109 0.891 50 H 0.097 0.903 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.773 -18.225 4.255 19.092 hybrid contribution -0.323 0.168 0.726 0.813 sum 3.450 -18.057 4.982 19.047 Atomic orbital electron populations 1.20352 0.80768 1.05403 1.05143 1.26462 0.96599 0.78382 1.00057 1.70659 1.00899 1.28435 1.18140 1.21507 0.92129 0.92166 1.12777 1.16762 0.85995 0.81723 0.76882 1.90735 1.24533 1.74916 1.52669 1.47966 1.10651 1.04638 1.68304 1.21680 0.88877 0.91856 0.98555 1.21966 0.99022 0.98200 0.97344 1.21613 0.92745 0.96208 1.00995 1.20906 0.90455 0.90854 0.91808 0.95198 1.22709 0.98640 0.99207 0.96252 1.23010 0.99467 0.98745 0.97605 1.21608 0.90573 0.99419 0.84249 1.44534 1.21614 1.47294 1.18315 1.19027 0.98055 1.16520 1.00876 0.90744 1.24750 0.96644 1.00888 0.98212 1.69918 1.11474 1.47202 1.28295 0.86110 0.78721 0.80629 0.80729 1.20623 1.21941 1.21870 1.21888 1.01202 0.96235 0.96022 1.22817 0.83526 0.99792 0.98470 1.23660 0.83838 0.94445 1.00303 1.20539 0.90195 0.97552 1.04551 1.84309 1.16381 1.37987 1.69920 0.88527 0.89267 0.87616 0.91577 0.89489 0.91874 0.91173 0.91227 0.92901 0.91434 0.92813 0.92608 0.96634 0.89574 0.93959 0.92613 0.89174 0.84930 0.92039 0.89115 0.90286 0.87142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.51 36.01 0.38 -0.01 16 2 C 0.19 2.15 8.30 -13.08 -0.11 2.04 16 3 N -0.45 -6.30 7.78 -7.65 -0.06 -6.36 16 4 C -0.07 -0.97 6.69 -83.02 -0.56 -1.52 16 5 C 0.60 9.58 7.68 -12.52 -0.10 9.48 16 6 O -0.55 -9.26 14.30 5.27 0.08 -9.18 16 7 N -0.59 -9.23 2.97 -174.04 -0.52 -9.75 16 8 C 0.11 1.64 6.44 -3.71 -0.02 1.62 16 9 C -0.13 -1.90 5.18 -26.61 -0.14 -2.03 16 10 C -0.09 -1.70 1.95 -90.58 -0.18 -1.88 16 11 C 0.17 3.37 2.88 -66.95 -0.19 3.17 16 12 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 13 C -0.13 -2.33 5.39 -24.90 -0.13 -2.46 16 14 C -0.15 -2.89 7.09 -24.58 -0.17 -3.06 16 15 C 0.17 3.98 5.63 -2.53 -0.01 3.97 16 16 N -0.59 -14.50 2.55 -162.57 -0.41 -14.91 16 17 C -0.22 -5.81 9.76 -15.06 -0.15 -5.95 16 18 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 19 C -0.01 -0.26 5.48 -17.43 -0.10 -0.35 16 20 N -0.92 -26.40 10.27 55.49 0.57 -25.83 16 21 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 C -0.12 -2.08 4.87 -26.62 -0.13 -2.21 16 26 C 0.08 1.24 6.13 -3.72 -0.02 1.21 16 27 C 0.03 0.41 7.44 -35.08 -0.26 0.15 16 28 C -0.07 -0.65 9.82 36.00 0.35 -0.30 16 29 O -0.20 -2.26 10.73 6.52 0.07 -2.19 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 1.25 7.00 -51.93 -0.36 0.88 16 35 H 0.06 0.96 7.50 -51.93 -0.39 0.57 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 1.39 7.87 -51.93 -0.41 0.98 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.18 5.39 -51.93 -0.28 0.90 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 2.33 6.34 -51.93 -0.33 2.00 16 44 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.06 1.00 5.88 -51.93 -0.31 0.69 16 46 H 0.09 1.93 7.71 -51.93 -0.40 1.53 16 47 H 0.13 2.15 4.02 -64.60 -0.26 1.89 16 48 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 49 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.11 1.14 6.62 -51.93 -0.34 0.79 16 LS Contribution 391.02 15.07 5.89 5.89 Total: -1.00 -31.59 391.02 -9.07 -40.65 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -8.12 Total: 2.94 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -1.54 Total: 1.87 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.42 Total: -56.84 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.15 Total: -11.37 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.59 -9.07 -40.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004585607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.642 kcal (2) G-P(sol) polarization free energy of solvation -31.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds