Wall clock time and date at job start Wed Apr 1 2020 04:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30010 * 127.33288 * 2 1 4 4 O 1.20652 * 112.30026 * 180.30043 * 3 2 1 5 5 C 1.33497 * 113.15928 * 359.71083 * 4 3 2 6 6 C 1.50697 * 126.83077 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47336 * 300.02640 * 6 5 4 8 8 C 1.52997 * 109.46902 * 60.03024 * 6 5 4 9 9 C 1.37367 * 106.33703 * 0.02562 * 5 4 3 10 10 C 1.47399 * 128.56183 * 179.97438 * 9 5 4 11 11 O 1.21600 * 120.00210 * 89.99811 * 10 9 5 12 12 N 1.34781 * 119.99630 * 269.99808 * 10 9 5 13 13 C 1.46499 * 119.99611 * 180.02562 * 12 10 9 14 14 H 1.08997 * 115.56887 * 9.28931 * 13 12 10 15 15 C 1.53040 * 117.49670 * 223.58139 * 13 12 10 16 16 C 1.52822 * 117.49888 * 154.99881 * 13 12 10 17 17 C 1.53178 * 117.71571 * 359.85967 * 16 13 12 18 18 C 1.53354 * 108.76913 * 158.87857 * 17 16 13 19 19 N 1.46839 * 108.81141 * 51.30384 * 18 17 16 20 20 C 1.36943 * 120.37901 * 123.11274 * 19 18 17 21 21 H 1.07999 * 119.99950 * 331.22649 * 20 19 18 22 22 C 1.38811 * 120.00018 * 151.22549 * 20 19 18 23 23 N 1.31621 * 119.99864 * 342.28973 * 22 20 19 24 24 Si 1.86795 * 119.99850 * 162.29129 * 22 20 19 25 25 H 1.48495 * 109.47250 * 179.97438 * 24 22 20 26 26 H 1.48500 * 109.47165 * 299.99963 * 24 22 20 27 27 H 1.48504 * 109.47405 * 60.00149 * 24 22 20 28 28 C 1.46844 * 119.24249 * 303.37737 * 19 18 17 29 29 C 1.52871 * 109.07030 * 56.58865 * 28 19 18 30 30 H 1.08996 * 109.47476 * 270.14597 * 1 2 3 31 31 H 1.09000 * 109.47051 * 30.15048 * 1 2 3 32 32 H 1.09004 * 109.46998 * 150.14453 * 1 2 3 33 33 H 1.09007 * 109.46810 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.47307 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.46706 * 300.00120 * 7 6 5 36 36 H 1.08999 * 109.47112 * 59.99905 * 7 6 5 37 37 H 1.08996 * 109.47818 * 59.99754 * 8 6 5 38 38 H 1.09001 * 109.46777 * 179.97438 * 8 6 5 39 39 H 1.09005 * 109.47369 * 299.99202 * 8 6 5 40 40 H 0.97000 * 119.99862 * 359.97438 * 12 10 9 41 41 H 1.09003 * 117.50143 * 145.04778 * 15 13 12 42 42 H 1.08991 * 117.53174 * 359.97438 * 15 13 12 43 43 H 1.09003 * 109.59144 * 39.08914 * 17 16 13 44 44 H 1.09007 * 109.58622 * 278.65860 * 17 16 13 45 45 H 1.08997 * 109.57212 * 291.50879 * 18 17 16 46 46 H 1.08995 * 109.58051 * 171.10607 * 18 17 16 47 47 H 0.97000 * 119.99597 * 180.02562 * 23 22 20 48 48 H 1.09000 * 109.57737 * 176.41847 * 28 19 18 49 49 H 1.08990 * 109.58155 * 296.82534 * 28 19 18 50 50 H 1.09009 * 109.66214 * 189.04410 * 29 28 19 51 51 H 1.09001 * 109.45030 * 68.65491 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4607 0.7208 -0.0059 5 6 3.6494 -0.6007 -0.0046 6 6 4.9712 -1.3245 -0.0112 7 6 5.7578 -0.9386 -1.2654 8 6 5.7719 -0.9352 1.2330 9 6 2.3991 -1.1696 0.0026 10 6 2.0401 -2.5992 0.0062 11 8 1.8975 -3.1876 1.0607 12 7 1.8698 -3.2542 -1.1594 13 6 1.5125 -4.6749 -1.1558 14 1 1.2487 -5.0911 -0.1836 15 6 2.2427 -5.5897 -2.1417 16 6 0.7786 -5.2210 -2.3800 17 6 0.4675 -4.2445 -3.5184 18 6 0.2358 -5.0451 -4.8057 19 7 -0.7516 -6.0982 -4.5371 20 6 -1.9017 -6.1742 -5.2767 21 1 -2.3271 -5.2796 -5.7068 22 6 -2.5205 -7.4011 -5.4735 23 7 -1.8524 -8.5160 -5.2658 24 14 -4.3013 -7.4697 -6.0331 25 1 -4.7232 -8.8870 -6.1690 26 1 -5.1616 -6.7906 -5.0311 27 1 -4.4348 -6.7861 -7.3446 28 6 -0.4945 -7.0654 -3.4625 29 6 -0.2749 -6.3094 -2.1521 30 1 -0.3634 0.0026 1.0276 31 1 -0.3633 0.8886 -0.5162 32 1 -0.3633 -0.8913 -0.5116 33 1 4.7963 -2.4004 -0.0087 34 1 6.7137 -1.4624 -1.2704 35 1 5.1873 -1.2160 -2.1518 36 1 5.9327 0.1373 -1.2679 37 1 5.2116 -1.2101 2.1266 38 1 6.7278 -1.4591 1.2285 39 1 5.9469 0.1407 1.2306 40 1 1.9832 -2.7846 -2.0006 41 1 2.4592 -6.6078 -1.8180 42 1 2.9886 -5.1348 -2.7933 43 1 1.3083 -3.5649 -3.6571 44 1 -0.4296 -3.6746 -3.2761 45 1 1.1736 -5.4973 -5.1282 46 1 -0.1397 -4.3825 -5.5854 47 1 -2.2848 -9.3732 -5.4036 48 1 -1.3507 -7.7320 -3.3585 49 1 0.3966 -7.6464 -3.6995 50 1 0.0735 -7.0002 -1.3841 51 1 -1.2119 -5.8508 -1.8362 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016668090.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:23 Heat of formation + Delta-G solvation = 55.681792 kcal Electronic energy + Delta-G solvation = -31244.648859 eV Core-core repulsion = 27148.216623 eV Total energy + Delta-G solvation = -4096.432236 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.14154 -40.03210 -38.46244 -36.44972 -35.54272 -34.81184 -33.17604 -31.69497 -31.09835 -30.06573 -29.04349 -28.33087 -27.64252 -25.19245 -24.37315 -23.27811 -22.52174 -22.06344 -21.03078 -20.50795 -19.67486 -18.35580 -18.08874 -17.90185 -16.68866 -16.50871 -16.13853 -15.87648 -14.91947 -14.68164 -14.55201 -14.16038 -14.07492 -13.78966 -13.57190 -13.54102 -13.49535 -13.40479 -13.16421 -13.10314 -12.74816 -12.65485 -12.30106 -11.91089 -11.80105 -11.74912 -11.70894 -11.63608 -11.38783 -11.20933 -11.00911 -10.74460 -10.49806 -10.43993 -10.36703 -10.12693 -9.98618 -9.75013 -9.70027 -9.67262 -9.41406 -8.57534 -8.47141 -6.67086 -5.81446 -3.24772 1.02665 1.65424 2.18611 2.51818 3.05409 3.36578 3.42816 3.44037 3.81289 3.89240 4.08964 4.38663 4.44165 4.47637 4.55270 4.69252 4.84795 4.89737 5.05822 5.07087 5.08082 5.17829 5.23068 5.31655 5.34623 5.36630 5.37785 5.40051 5.43842 5.54979 5.59189 5.74546 5.75951 5.78180 5.79816 5.98229 6.02043 6.02226 6.24311 6.38257 6.45003 6.57097 6.59316 6.66423 6.78692 6.92168 7.31437 7.34199 7.64087 7.77015 7.96142 7.98924 8.44047 9.19332 9.82770 10.39080 11.26435 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017501 B = 0.002418 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.505625 B =11575.752014 C =12143.298354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.057 3.943 3 N -0.356 5.356 4 O 0.099 5.901 5 C 0.027 3.973 6 C -0.017 4.017 7 C -0.150 4.150 8 C -0.150 4.150 9 C -0.249 4.249 10 C 0.601 3.399 11 O -0.525 6.525 12 N -0.682 5.682 13 C 0.065 3.935 14 H 0.134 0.866 15 C -0.180 4.180 16 C -0.094 4.094 17 C -0.098 4.098 18 C 0.150 3.850 19 N -0.589 5.589 20 C -0.255 4.255 21 H 0.064 0.936 22 C 0.004 3.996 23 N -0.901 5.901 24 Si 0.901 3.099 25 H -0.290 1.290 26 H -0.284 1.284 27 H -0.283 1.283 28 C 0.173 3.827 29 C -0.106 4.106 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.403 0.597 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.044 0.956 44 H 0.064 0.936 45 H 0.019 0.981 46 H 0.054 0.946 47 H 0.255 0.745 48 H 0.090 0.910 49 H 0.018 0.982 50 H 0.052 0.948 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.334 14.879 10.397 23.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 N -0.063 5.063 4 O 0.038 5.962 5 C -0.037 4.037 6 C -0.036 4.036 7 C -0.207 4.207 8 C -0.207 4.207 9 C -0.256 4.256 10 C 0.385 3.615 11 O -0.401 6.401 12 N -0.331 5.331 13 C -0.040 4.040 14 H 0.152 0.848 15 C -0.218 4.218 16 C -0.095 4.095 17 C -0.138 4.138 18 C 0.024 3.976 19 N -0.311 5.311 20 C -0.385 4.385 21 H 0.081 0.919 22 C -0.195 4.195 23 N -0.545 5.545 24 Si 0.731 3.269 25 H -0.216 1.216 26 H -0.210 1.210 27 H -0.209 1.209 28 C 0.047 3.953 29 C -0.145 4.145 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.121 0.879 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.238 0.762 41 H 0.119 0.881 42 H 0.110 0.890 43 H 0.063 0.937 44 H 0.083 0.917 45 H 0.037 0.963 46 H 0.073 0.927 47 H 0.065 0.935 48 H 0.108 0.892 49 H 0.036 0.964 50 H 0.071 0.929 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.980 15.595 11.117 23.711 hybrid contribution -0.946 -0.654 -0.674 1.333 sum 13.034 14.940 10.443 22.409 Atomic orbital electron populations 1.20257 0.84969 1.04415 1.04059 1.24770 0.98647 0.86397 1.00687 1.73626 0.89108 1.23290 1.20245 1.84507 1.21458 1.22447 1.67792 1.24648 0.96797 0.83769 0.98487 1.19934 0.86979 0.98705 0.98024 1.21898 1.00258 1.02688 0.95859 1.21881 1.00075 1.02555 0.96174 1.21941 0.92818 0.95317 1.15540 1.16809 0.76836 0.83721 0.84084 1.90820 1.50270 1.67935 1.31105 1.45384 1.69157 1.10515 1.08070 1.21991 1.05098 0.79597 0.97286 0.84813 1.23542 0.95904 1.00195 1.02195 1.21972 0.93293 0.99229 0.95027 1.21644 0.99658 0.96239 0.96217 1.20826 0.92733 0.91018 0.93058 1.43945 1.19280 1.31965 1.35907 1.19134 0.99472 0.92210 1.27689 0.91868 1.25042 0.98898 0.95616 0.99939 1.70023 1.35007 0.96822 1.52635 0.86393 0.85255 0.76608 0.78655 1.21621 1.21010 1.20886 1.20661 1.00428 0.90697 0.83506 1.21813 0.96321 0.95642 1.00736 0.89528 0.89775 0.89556 0.87871 0.90844 0.91877 0.91511 0.91837 0.90889 0.91567 0.76160 0.88139 0.88973 0.93701 0.91716 0.96297 0.92735 0.93546 0.89172 0.96377 0.92906 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.49 36.01 0.38 -0.38 16 2 C 0.06 0.67 7.59 -79.77 -0.61 0.07 16 3 N -0.36 -4.36 12.01 34.78 0.42 -3.94 16 4 O 0.10 1.10 11.06 18.64 0.21 1.30 16 5 C 0.03 0.27 6.06 -34.63 -0.21 0.06 16 6 C -0.02 -0.13 3.33 -91.78 -0.31 -0.43 16 7 C -0.15 -0.88 9.18 37.16 0.34 -0.54 16 8 C -0.15 -0.96 9.18 37.16 0.34 -0.62 16 9 C -0.25 -2.97 6.24 -102.89 -0.64 -3.61 16 10 C 0.60 8.06 7.30 -12.53 -0.09 7.97 16 11 O -0.53 -8.86 16.67 5.28 0.09 -8.77 16 12 N -0.68 -8.28 5.34 -54.96 -0.29 -8.57 16 13 C 0.07 0.90 6.14 -68.00 -0.42 0.48 16 14 H 0.13 1.99 7.40 -51.93 -0.38 1.61 16 15 C -0.18 -2.42 9.87 -26.78 -0.26 -2.68 16 16 C -0.09 -1.46 1.94 -154.49 -0.30 -1.76 16 17 C -0.10 -1.55 5.37 -26.46 -0.14 -1.70 16 18 C 0.15 2.98 6.52 -3.67 -0.02 2.95 16 19 N -0.59 -14.18 2.94 -172.56 -0.51 -14.69 16 20 C -0.26 -6.83 9.54 -15.06 -0.14 -6.97 16 21 H 0.06 1.66 7.89 -52.49 -0.41 1.25 16 22 C 0.00 0.10 4.89 -17.43 -0.09 0.02 16 23 N -0.90 -25.62 11.23 55.49 0.62 -25.00 16 24 Si 0.90 21.33 29.59 -169.99 -5.03 16.30 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 28 C 0.17 3.96 5.37 -3.92 -0.02 3.94 16 29 C -0.11 -1.93 5.81 -26.71 -0.16 -2.09 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.10 0.83 7.71 -51.92 -0.40 0.43 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.40 4.26 7.10 -40.82 -0.29 3.97 16 41 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 42 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.04 0.58 6.75 -51.93 -0.35 0.23 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.05 1.06 7.92 -51.93 -0.41 0.65 16 47 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 48 H 0.09 2.34 5.94 -51.93 -0.31 2.03 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.05 0.87 8.10 -51.92 -0.42 0.45 16 51 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 414.21 15.07 6.24 6.24 Total: -1.00 -31.30 414.21 -9.06 -40.36 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -8.46 Total: 2.05 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -2.35 Total: -5.28 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.24 Total: -52.21 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: 0.29 Total: -7.47 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -31.30 -9.06 -40.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016668090.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.043 kcal (2) G-P(sol) polarization free energy of solvation -31.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds