Wall clock time and date at job start Wed Apr 1 2020 04:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30010 * 127.33288 * 2 1 4 4 O 1.20652 * 112.30026 * 180.30043 * 3 2 1 5 5 C 1.33497 * 113.15928 * 359.71083 * 4 3 2 6 6 C 1.50697 * 126.83077 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47336 * 300.02640 * 6 5 4 8 8 C 1.52997 * 109.46902 * 60.03024 * 6 5 4 9 9 C 1.37367 * 106.33703 * 0.02562 * 5 4 3 10 10 C 1.47399 * 128.56183 * 179.97438 * 9 5 4 11 11 O 1.21600 * 120.00210 * 89.99811 * 10 9 5 12 12 N 1.34781 * 119.99630 * 269.99808 * 10 9 5 13 13 C 1.46499 * 119.99611 * 180.02562 * 12 10 9 14 14 H 1.08997 * 115.56887 * 9.28931 * 13 12 10 15 15 C 1.53040 * 117.49670 * 223.58139 * 13 12 10 16 16 C 1.52822 * 117.49888 * 154.99881 * 13 12 10 17 17 C 1.53178 * 117.71571 * 359.85967 * 16 13 12 18 18 C 1.53354 * 108.76913 * 158.87857 * 17 16 13 19 19 N 1.46839 * 108.81141 * 51.30384 * 18 17 16 20 20 C 1.36943 * 120.37901 * 123.11274 * 19 18 17 21 21 H 1.07999 * 119.99950 * 331.22649 * 20 19 18 22 22 C 1.38811 * 120.00018 * 151.22549 * 20 19 18 23 23 N 1.31621 * 119.99864 * 342.28973 * 22 20 19 24 24 Si 1.86795 * 119.99850 * 162.29129 * 22 20 19 25 25 H 1.48495 * 109.47250 * 179.97438 * 24 22 20 26 26 H 1.48500 * 109.47165 * 299.99963 * 24 22 20 27 27 H 1.48504 * 109.47405 * 60.00149 * 24 22 20 28 28 C 1.46844 * 119.24249 * 303.37737 * 19 18 17 29 29 C 1.52871 * 109.07030 * 56.58865 * 28 19 18 30 30 H 1.08996 * 109.47476 * 270.14597 * 1 2 3 31 31 H 1.09000 * 109.47051 * 30.15048 * 1 2 3 32 32 H 1.09004 * 109.46998 * 150.14453 * 1 2 3 33 33 H 1.09007 * 109.46810 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.47307 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.46706 * 300.00120 * 7 6 5 36 36 H 1.08999 * 109.47112 * 59.99905 * 7 6 5 37 37 H 1.08996 * 109.47818 * 59.99754 * 8 6 5 38 38 H 1.09001 * 109.46777 * 179.97438 * 8 6 5 39 39 H 1.09005 * 109.47369 * 299.99202 * 8 6 5 40 40 H 0.97000 * 119.99862 * 359.97438 * 12 10 9 41 41 H 1.09003 * 117.50143 * 145.04778 * 15 13 12 42 42 H 1.08991 * 117.53174 * 359.97438 * 15 13 12 43 43 H 1.09003 * 109.59144 * 39.08914 * 17 16 13 44 44 H 1.09007 * 109.58622 * 278.65860 * 17 16 13 45 45 H 1.08997 * 109.57212 * 291.50879 * 18 17 16 46 46 H 1.08995 * 109.58051 * 171.10607 * 18 17 16 47 47 H 0.97000 * 119.99597 * 180.02562 * 23 22 20 48 48 H 1.09000 * 109.57737 * 176.41847 * 28 19 18 49 49 H 1.08990 * 109.58155 * 296.82534 * 28 19 18 50 50 H 1.09009 * 109.66214 * 189.04410 * 29 28 19 51 51 H 1.09001 * 109.45030 * 68.65491 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4607 0.7208 -0.0059 5 6 3.6494 -0.6007 -0.0046 6 6 4.9712 -1.3245 -0.0112 7 6 5.7578 -0.9386 -1.2654 8 6 5.7719 -0.9352 1.2330 9 6 2.3991 -1.1696 0.0026 10 6 2.0401 -2.5992 0.0062 11 8 1.8975 -3.1876 1.0607 12 7 1.8698 -3.2542 -1.1594 13 6 1.5125 -4.6749 -1.1558 14 1 1.2487 -5.0911 -0.1836 15 6 2.2427 -5.5897 -2.1417 16 6 0.7786 -5.2210 -2.3800 17 6 0.4675 -4.2445 -3.5184 18 6 0.2358 -5.0451 -4.8057 19 7 -0.7516 -6.0982 -4.5371 20 6 -1.9017 -6.1742 -5.2767 21 1 -2.3271 -5.2796 -5.7068 22 6 -2.5205 -7.4011 -5.4735 23 7 -1.8524 -8.5160 -5.2658 24 14 -4.3013 -7.4697 -6.0331 25 1 -4.7232 -8.8870 -6.1690 26 1 -5.1616 -6.7906 -5.0311 27 1 -4.4348 -6.7861 -7.3446 28 6 -0.4945 -7.0654 -3.4625 29 6 -0.2749 -6.3094 -2.1521 30 1 -0.3634 0.0026 1.0276 31 1 -0.3633 0.8886 -0.5162 32 1 -0.3633 -0.8913 -0.5116 33 1 4.7963 -2.4004 -0.0087 34 1 6.7137 -1.4624 -1.2704 35 1 5.1873 -1.2160 -2.1518 36 1 5.9327 0.1373 -1.2679 37 1 5.2116 -1.2101 2.1266 38 1 6.7278 -1.4591 1.2285 39 1 5.9469 0.1407 1.2306 40 1 1.9832 -2.7846 -2.0006 41 1 2.4592 -6.6078 -1.8180 42 1 2.9886 -5.1348 -2.7933 43 1 1.3083 -3.5649 -3.6571 44 1 -0.4296 -3.6746 -3.2761 45 1 1.1736 -5.4973 -5.1282 46 1 -0.1397 -4.3825 -5.5854 47 1 -2.2848 -9.3732 -5.4036 48 1 -1.3507 -7.7320 -3.3585 49 1 0.3966 -7.6464 -3.6995 50 1 0.0735 -7.0002 -1.3841 51 1 -1.2119 -5.8508 -1.8362 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016668090.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:22 Heat of formation + Delta-G solvation = 38.482350 kcal Electronic energy + Delta-G solvation = -31245.394683 eV Core-core repulsion = 27148.216623 eV Total energy + Delta-G solvation = -4097.178060 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.00798 -41.18467 -39.75377 -37.17805 -37.04053 -35.68647 -34.51593 -33.36842 -32.00126 -31.61738 -29.99297 -29.79261 -28.10032 -26.32413 -26.04253 -24.05916 -23.93838 -23.23006 -22.48359 -21.66761 -20.47481 -19.81301 -19.12224 -18.82116 -18.25727 -17.53922 -17.28233 -16.76676 -16.63915 -15.82634 -15.61687 -15.48553 -15.28001 -15.04456 -14.85211 -14.67430 -14.41932 -14.30457 -14.15808 -14.12936 -13.82550 -13.80980 -13.30492 -13.10603 -13.06886 -12.88087 -12.62445 -12.56879 -12.55788 -12.35841 -12.28385 -12.25649 -12.03422 -11.86499 -11.77857 -11.53431 -11.39891 -11.23597 -11.01015 -10.73720 -10.53147 -10.45707 -9.76854 -8.61108 -7.85534 -5.31296 0.20438 0.77202 1.14751 1.46889 1.49375 1.55721 1.65000 2.10328 2.52163 2.89969 3.01481 3.10907 3.29441 3.57551 3.64802 3.71822 3.79554 3.85878 3.96350 3.98347 4.03340 4.12316 4.13724 4.39034 4.51716 4.52536 4.54265 4.60987 4.66859 4.74169 4.77161 4.85217 4.87080 4.88766 4.90900 4.94921 5.03074 5.03527 5.06660 5.09349 5.16464 5.28290 5.31572 5.32868 5.39149 5.40214 5.56179 5.66804 5.79549 6.31458 6.42286 6.96874 7.11856 7.17817 7.90446 8.40652 9.19464 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017501 B = 0.002418 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.505625 B =11575.752014 C =12143.298354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.052 3.948 3 N -0.373 5.373 4 O 0.098 5.902 5 C 0.044 3.956 6 C -0.018 4.018 7 C -0.146 4.146 8 C -0.148 4.148 9 C -0.273 4.273 10 C 0.611 3.389 11 O -0.563 6.563 12 N -0.670 5.670 13 C 0.083 3.917 14 H 0.125 0.875 15 C -0.163 4.163 16 C -0.113 4.113 17 C -0.084 4.084 18 C 0.146 3.854 19 N -0.608 5.608 20 C -0.263 4.263 21 H 0.064 0.936 22 C -0.049 4.049 23 N -0.932 5.932 24 Si 0.962 3.038 25 H -0.295 1.295 26 H -0.280 1.280 27 H -0.275 1.275 28 C 0.181 3.819 29 C -0.094 4.094 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.413 0.587 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.082 0.918 44 H 0.056 0.944 45 H 0.019 0.981 46 H 0.053 0.947 47 H 0.250 0.750 48 H 0.052 0.948 49 H 0.000 1.000 50 H 0.069 0.931 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.928 16.564 10.555 25.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 N -0.081 5.081 4 O 0.039 5.961 5 C -0.020 4.020 6 C -0.038 4.038 7 C -0.204 4.204 8 C -0.205 4.205 9 C -0.280 4.280 10 C 0.396 3.604 11 O -0.441 6.441 12 N -0.319 5.319 13 C -0.022 4.022 14 H 0.142 0.858 15 C -0.201 4.201 16 C -0.115 4.115 17 C -0.123 4.123 18 C 0.020 3.980 19 N -0.331 5.331 20 C -0.394 4.394 21 H 0.082 0.918 22 C -0.244 4.244 23 N -0.578 5.578 24 Si 0.790 3.210 25 H -0.221 1.221 26 H -0.206 1.206 27 H -0.201 1.201 28 C 0.055 3.945 29 C -0.133 4.133 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.251 0.749 41 H 0.123 0.877 42 H 0.131 0.869 43 H 0.101 0.899 44 H 0.075 0.925 45 H 0.037 0.963 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.071 0.929 49 H 0.018 0.982 50 H 0.087 0.913 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.597 17.325 11.254 25.886 hybrid contribution -1.374 -1.152 -0.725 1.934 sum 14.223 16.174 10.530 23.974 Atomic orbital electron populations 1.20348 0.83811 1.05025 1.04610 1.25114 0.99547 0.86206 1.00119 1.73619 0.89508 1.23711 1.21265 1.84491 1.21124 1.22799 1.67711 1.25149 0.97402 0.83350 0.96088 1.20120 0.86017 0.98111 0.99520 1.21905 1.00712 1.03149 0.94601 1.21896 1.00581 1.03179 0.94883 1.21834 0.93730 0.94567 1.17901 1.16885 0.75866 0.84051 0.83594 1.90805 1.52015 1.68876 1.32437 1.45255 1.68406 1.09883 1.08363 1.21732 1.03996 0.80420 0.96071 0.85768 1.23636 0.94444 1.00565 1.01502 1.21801 0.94048 0.99224 0.96418 1.21455 1.00866 0.96028 0.93928 1.20986 0.91509 0.90214 0.95263 1.44208 1.19746 1.32980 1.36175 1.19456 1.00568 0.92184 1.27153 0.91849 1.25749 1.02363 0.95404 1.00910 1.70169 1.36282 0.97012 1.54339 0.85424 0.80946 0.76161 0.78428 1.22088 1.20650 1.20098 1.20423 0.97872 0.90599 0.85589 1.21558 0.97052 0.96393 0.98333 0.88984 0.88478 0.89592 0.88192 0.89048 0.92050 0.91207 0.93234 0.88863 0.91064 0.74902 0.87721 0.86947 0.89937 0.92524 0.96305 0.92885 0.94132 0.92928 0.98158 0.91279 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 10.49 71.24 0.75 -0.68 16 2 C 0.05 1.16 7.59 45.16 0.34 1.51 16 3 N -0.37 -8.66 12.01 -44.80 -0.54 -9.20 16 4 O 0.10 2.03 11.06 76.96 0.85 2.88 16 5 C 0.04 0.82 6.06 25.48 0.15 0.98 16 6 C -0.02 -0.23 3.33 -11.54 -0.04 -0.27 16 7 C -0.15 -1.28 9.18 71.98 0.66 -0.62 16 8 C -0.15 -1.57 9.18 71.98 0.66 -0.91 16 9 C -0.27 -6.11 6.24 -18.74 -0.12 -6.22 16 10 C 0.61 15.41 7.30 86.65 0.63 16.04 16 11 O -0.56 -18.46 16.67 -4.03 -0.07 -18.53 16 12 N -0.67 -14.59 5.34 -446.05 -2.38 -16.98 16 13 C 0.08 2.09 6.14 44.95 0.28 2.37 16 14 H 0.12 3.49 7.40 -2.39 -0.02 3.47 16 15 C -0.16 -3.91 9.87 30.56 0.30 -3.61 16 16 C -0.11 -3.33 1.94 -52.17 -0.10 -3.43 16 17 C -0.08 -2.47 5.37 30.77 0.17 -2.30 16 18 C 0.15 5.63 6.52 86.43 0.56 6.19 16 19 N -0.61 -29.59 2.94 -699.85 -2.06 -31.65 16 20 C -0.26 -14.26 9.54 84.03 0.80 -13.46 16 21 H 0.06 3.35 7.89 -2.91 -0.02 3.33 16 22 C -0.05 -2.69 4.89 84.86 0.41 -2.28 16 23 N -0.93 -54.62 11.23 21.65 0.24 -54.37 16 24 Si 0.96 44.55 29.59 68.60 2.03 46.58 16 25 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 27 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 28 C 0.18 8.48 5.37 86.27 0.46 8.94 16 29 C -0.09 -3.42 5.81 30.61 0.18 -3.24 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.10 1.38 7.71 -2.38 -0.02 1.36 16 34 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 40 H 0.41 7.37 7.10 -92.71 -0.66 6.71 16 41 H 0.10 2.48 8.14 -2.39 -0.02 2.47 16 42 H 0.11 2.28 8.14 -2.39 -0.02 2.27 16 43 H 0.08 1.81 6.75 -2.39 -0.02 1.80 16 44 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 45 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.05 2.02 7.92 -2.39 -0.02 2.00 16 47 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 48 H 0.05 2.84 5.94 -2.39 -0.01 2.83 16 49 H 0.00 0.01 8.14 -2.39 -0.02 0.00 16 50 H 0.07 2.24 8.10 -2.38 -0.02 2.23 16 51 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -69.18 414.21 4.45 -64.72 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.27 Total: 17.56 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 6.10 Total: -1.01 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -4.74 Total: -112.20 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: 0.78 Total: -15.65 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -69.18 4.45 -64.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016668090.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.204 kcal (2) G-P(sol) polarization free energy of solvation -69.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds