Wall clock time and date at job start Wed Apr 1 2020 04:39:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 N 1.30010 * 127.33734 * 2 1
4 4 O 1.20653 * 112.30404 * 180.02562 * 3 2 1
5 5 C 1.33496 * 113.15500 * 359.72497 * 4 3 2
6 6 C 1.50700 * 126.83292 * 180.33288 * 5 4 3
7 7 C 1.53005 * 109.46970 * 300.14119 * 6 5 4
8 8 C 1.53009 * 109.47110 * 60.13623 * 6 5 4
9 9 C 1.37359 * 106.34261 * 0.44348 * 5 4 3
10 10 C 1.47388 * 128.56878 * 179.85858 * 9 5 4
11 11 O 1.21616 * 120.00339 * 269.70922 * 10 9 5
12 12 N 1.34777 * 120.00374 * 89.97979 * 10 9 5
13 13 C 1.46500 * 120.00553 * 179.72791 * 12 10 9
14 14 H 1.08995 * 115.55020 * 350.57883 * 13 12 10
15 15 C 1.53031 * 117.50483 * 136.26706 * 13 12 10
16 16 C 1.52814 * 117.50063 * 204.89574 * 13 12 10
17 17 C 1.53192 * 117.71275 * 144.89827 * 16 13 12
18 18 C 1.53340 * 108.77067 * 158.88912 * 17 16 13
19 19 N 1.46838 * 108.81721 * 51.30897 * 18 17 16
20 20 C 1.36933 * 120.38530 * 123.12616 * 19 18 17
21 21 H 1.08011 * 119.99790 * 331.79610 * 20 19 18
22 22 C 1.38808 * 120.00340 * 151.79811 * 20 19 18
23 23 N 1.31621 * 120.00103 * 159.29622 * 22 20 19
24 24 Si 1.86796 * 120.00150 * 339.29717 * 22 20 19
25 25 H 1.48500 * 109.47264 * 94.24672 * 24 22 20
26 26 H 1.48496 * 109.47499 * 214.24706 * 24 22 20
27 27 H 1.48498 * 109.46900 * 334.24724 * 24 22 20
28 28 C 1.46850 * 119.23332 * 303.09907 * 19 18 17
29 29 C 1.53180 * 117.71943 * 0.14153 * 16 13 12
30 30 H 1.09005 * 109.46757 * 269.95563 * 1 2 3
31 31 H 1.08999 * 109.46856 * 29.94875 * 1 2 3
32 32 H 1.08998 * 109.47605 * 149.95357 * 1 2 3
33 33 H 1.08994 * 109.47363 * 180.13616 * 6 5 4
34 34 H 1.09005 * 109.46663 * 299.99687 * 7 6 5
35 35 H 1.08998 * 109.47336 * 59.99098 * 7 6 5
36 36 H 1.08997 * 109.47407 * 180.02562 * 7 6 5
37 37 H 1.08995 * 109.46783 * 60.00098 * 8 6 5
38 38 H 1.08997 * 109.46880 * 180.02562 * 8 6 5
39 39 H 1.09006 * 109.46563 * 300.00221 * 8 6 5
40 40 H 0.97008 * 119.99619 * 359.72125 * 12 10 9
41 41 H 1.08997 * 117.50291 * 214.95798 * 15 13 12
42 42 H 1.09005 * 117.49789 * 0.02562 * 15 13 12
43 43 H 1.08995 * 109.58563 * 278.67888 * 17 16 13
44 44 H 1.09000 * 109.58514 * 39.10048 * 17 16 13
45 45 H 1.09002 * 109.58192 * 291.50645 * 18 17 16
46 46 H 1.08998 * 109.58265 * 171.11122 * 18 17 16
47 47 H 0.97003 * 120.00072 * 179.97438 * 23 22 20
48 48 H 1.09005 * 109.57762 * 297.10550 * 28 19 18
49 49 H 1.09000 * 109.58190 * 176.70409 * 28 19 18
50 50 H 1.09000 * 109.58446 * 320.90399 * 29 16 13
51 51 H 1.09002 * 109.58777 * 81.32458 * 29 16 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2955 1.0337 0.0000
4 8 3.4608 0.7207 -0.0005
5 6 3.6494 -0.6008 0.0050
6 6 4.9711 -1.3248 0.0130
7 6 5.7715 -0.9389 -1.2326
8 6 5.7583 -0.9353 1.2659
9 6 2.3991 -1.1697 -0.0008
10 6 2.0400 -2.5992 -0.0011
11 8 1.8919 -3.1888 -1.0544
12 7 1.8703 -3.2517 1.1659
13 6 1.5075 -4.6711 1.1656
14 1 1.2374 -5.0870 0.1950
15 6 2.2392 -5.5878 2.1484
16 6 0.7770 -5.2129 2.3935
17 6 -0.2818 -6.2976 2.1716
18 6 -0.4961 -7.0547 3.4878
19 7 -0.7475 -6.0816 4.5583
20 6 -1.8944 -6.1523 5.3031
21 1 -2.7919 -6.5732 4.8741
22 6 -1.9037 -5.6831 6.6095
23 7 -3.0434 -5.3672 7.1872
24 14 -0.2988 -5.4999 7.5475
25 1 0.1992 -4.1077 7.4094
26 1 -0.5269 -5.8038 8.9831
27 1 0.7073 -6.4425 6.9959
28 6 0.2454 -5.0322 4.8214
29 6 0.4746 -4.2340 3.5323
30 1 -0.3633 -0.0008 1.0277
31 1 -0.3633 0.8904 -0.5130
32 1 -0.3634 -0.8895 -0.5145
33 1 4.7962 -2.4006 0.0137
34 1 5.2107 -1.2163 -2.1251
35 1 5.9464 0.1370 -1.2332
36 1 6.7273 -1.4628 -1.2270
37 1 5.1881 -1.2102 2.1532
38 1 6.7144 -1.4586 1.2715
39 1 5.9332 0.1406 1.2652
40 1 1.9885 -2.7815 2.0061
41 1 2.4501 -6.6069 1.8246
42 1 2.9903 -5.1346 2.7956
43 1 -1.2183 -5.8356 1.8591
44 1 0.0605 -6.9905 1.4029
45 1 0.3953 -7.6357 3.7242
46 1 -1.3534 -7.7207 3.3907
47 1 -3.0499 -5.0396 8.1003
48 1 1.1828 -5.4880 5.1404
49 1 -0.1240 -4.3672 5.6020
50 1 1.3187 -3.5576 3.6664
51 1 -0.4212 -3.6608 3.2932
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001016668092.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:39:26
Heat of formation + Delta-G solvation = 61.695560 kcal
Electronic energy + Delta-G solvation = -31452.089789 eV
Core-core repulsion = 27355.918329 eV
Total energy + Delta-G solvation = -4096.171460 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-45.15269 -40.13672 -38.63625 -36.47612 -35.81100 -34.81959 -33.26958 -31.78053
-31.11749 -30.60101 -29.05904 -28.72002 -27.66355 -25.23949 -24.23104 -23.29793
-23.09570 -22.14775 -21.24255 -20.56854 -19.70641 -18.57923 -18.11804 -17.91936
-16.76854 -16.63884 -16.15653 -15.91898 -15.30724 -14.74273 -14.61150 -14.30286
-14.12771 -13.97573 -13.80144 -13.79840 -13.53351 -13.50351 -13.11513 -13.02956
-12.81286 -12.67499 -12.48407 -12.08691 -12.03288 -11.92724 -11.78833 -11.77963
-11.77017 -11.31813 -11.20651 -10.83655 -10.64913 -10.52689 -10.34225 -10.13665
-10.05650 -9.83776 -9.72870 -9.58402 -9.49171 -8.83955 -8.54029 -6.98460
-5.98458 -3.34389 1.00928 1.64729 2.12885 2.49520 2.99855 3.26616
3.44749 3.47393 3.79896 3.86046 3.95121 4.35808 4.41815 4.48895
4.52903 4.65632 4.72628 4.81495 4.86728 4.90897 5.05646 5.07125
5.15690 5.24675 5.25182 5.30286 5.32714 5.36680 5.37616 5.39253
5.52820 5.64143 5.73723 5.74590 5.78916 5.80032 5.84230 5.87749
5.99421 6.10548 6.25977 6.29392 6.34520 6.38698 6.56055 6.63599
6.65344 6.90693 7.24857 7.92385 7.94555 7.95474 8.30419 8.91989
9.69030 10.06929 11.17581
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013596 B = 0.002754 C = 0.002703
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2058.864626 B =10165.671753 C =10355.119985
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 C 0.058 3.942
3 N -0.356 5.356
4 O 0.100 5.900
5 C 0.027 3.973
6 C -0.017 4.017
7 C -0.150 4.150
8 C -0.150 4.150
9 C -0.250 4.250
10 C 0.603 3.397
11 O -0.526 6.526
12 N -0.683 5.683
13 C 0.072 3.928
14 H 0.136 0.864
15 C -0.182 4.182
16 C -0.099 4.099
17 C -0.099 4.099
18 C 0.152 3.848
19 N -0.604 5.604
20 C -0.261 4.261
21 H 0.085 0.915
22 C 0.023 3.977
23 N -0.908 5.908
24 Si 0.882 3.118
25 H -0.290 1.290
26 H -0.303 1.303
27 H -0.270 1.270
28 C 0.132 3.868
29 C -0.099 4.099
30 H 0.089 0.911
31 H 0.083 0.917
32 H 0.085 0.915
33 H 0.103 0.897
34 H 0.063 0.937
35 H 0.066 0.934
36 H 0.072 0.928
37 H 0.062 0.938
38 H 0.072 0.928
39 H 0.066 0.934
40 H 0.404 0.596
41 H 0.101 0.899
42 H 0.093 0.907
43 H 0.069 0.931
44 H 0.058 0.942
45 H 0.024 0.976
46 H 0.065 0.935
47 H 0.262 0.738
48 H 0.026 0.974
49 H 0.072 0.928
50 H 0.047 0.953
51 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.180 8.453 -14.943 24.288
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.104 4.104
3 N -0.062 5.062
4 O 0.038 5.962
5 C -0.037 4.037
6 C -0.036 4.036
7 C -0.207 4.207
8 C -0.207 4.207
9 C -0.257 4.257
10 C 0.388 3.612
11 O -0.401 6.401
12 N -0.332 5.332
13 C -0.033 4.033
14 H 0.154 0.846
15 C -0.221 4.221
16 C -0.101 4.101
17 C -0.138 4.138
18 C 0.026 3.974
19 N -0.327 5.327
20 C -0.389 4.389
21 H 0.103 0.897
22 C -0.176 4.176
23 N -0.551 5.551
24 Si 0.712 3.288
25 H -0.218 1.218
26 H -0.232 1.232
27 H -0.195 1.195
28 C 0.007 3.993
29 C -0.138 4.138
30 H 0.108 0.892
31 H 0.102 0.898
32 H 0.104 0.896
33 H 0.121 0.879
34 H 0.082 0.918
35 H 0.085 0.915
36 H 0.091 0.909
37 H 0.081 0.919
38 H 0.091 0.909
39 H 0.085 0.915
40 H 0.240 0.760
41 H 0.120 0.880
42 H 0.112 0.888
43 H 0.087 0.913
44 H 0.077 0.923
45 H 0.042 0.958
46 H 0.084 0.916
47 H 0.072 0.928
48 H 0.044 0.956
49 H 0.090 0.910
50 H 0.066 0.934
51 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 16.772 9.387 -15.552 24.725
hybrid contribution 0.797 -0.320 1.106 1.400
sum 17.569 9.067 -14.447 24.487
Atomic orbital electron populations
1.20276 0.84913 1.04419 1.04221 1.24780 0.98672 0.86335 1.00588
1.73632 0.89087 1.23275 1.20215 1.84512 1.21480 1.22399 1.67768
1.24648 0.96776 0.83832 0.98463 1.19931 0.87001 0.98648 0.98036
1.21883 1.00056 1.02607 0.96138 1.21903 1.00230 1.02737 0.95872
1.21910 0.92845 0.95261 1.15712 1.16803 0.76691 0.83753 0.83986
1.90822 1.50247 1.67857 1.31219 1.45381 1.69085 1.10569 1.08213
1.21923 1.04468 0.79875 0.97065 0.84637 1.23593 0.95755 1.00286
1.02432 1.21952 0.93171 0.99366 0.95562 1.21688 0.97174 0.95748
0.99196 1.20879 0.98827 0.90945 0.86709 1.44274 1.21317 1.28800
1.38299 1.18941 0.87799 1.39182 0.92961 0.89728 1.25304 0.96278
0.99425 0.96572 1.69841 1.25149 1.45745 1.14324 0.86947 0.85395
0.77457 0.78959 1.21779 1.23161 1.19486 1.21270 0.92464 0.90853
0.94756 1.21638 1.00303 0.96300 0.95564 0.89247 0.89817 0.89585
0.87923 0.91828 0.91538 0.90904 0.91884 0.90854 0.91476 0.76039
0.88041 0.88837 0.91281 0.92335 0.95791 0.91645 0.92770 0.95602
0.91000 0.93430 0.90963
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.79 10.49 36.01 0.38 -0.41 16
2 C 0.06 0.70 7.59 -79.77 -0.61 0.09 16
3 N -0.36 -4.42 12.01 34.78 0.42 -4.00 16
4 O 0.10 1.11 11.06 18.64 0.21 1.32 16
5 C 0.03 0.27 6.06 -34.63 -0.21 0.06 16
6 C -0.02 -0.12 3.33 -91.76 -0.31 -0.43 16
7 C -0.15 -0.94 9.18 37.16 0.34 -0.60 16
8 C -0.15 -0.89 9.18 37.16 0.34 -0.55 16
9 C -0.25 -2.96 6.24 -102.90 -0.64 -3.60 16
10 C 0.60 7.86 7.30 -12.54 -0.09 7.77 16
11 O -0.53 -8.52 16.67 5.26 0.09 -8.44 16
12 N -0.68 -8.02 5.34 -54.97 -0.29 -8.31 16
13 C 0.07 0.91 6.13 -68.01 -0.42 0.49 16
14 H 0.14 1.82 7.40 -51.93 -0.38 1.43 16
15 C -0.18 -2.19 9.87 -26.75 -0.26 -2.46 16
16 C -0.10 -1.42 1.94 -154.45 -0.30 -1.72 16
17 C -0.10 -1.51 5.83 -26.46 -0.15 -1.67 16
18 C 0.15 2.84 6.51 -3.68 -0.02 2.81 16
19 N -0.60 -13.73 2.71 -172.27 -0.47 -14.19 16
20 C -0.26 -7.09 10.00 -15.06 -0.15 -7.24 16
21 H 0.09 2.47 8.06 -52.48 -0.42 2.04 16
22 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16
23 N -0.91 -27.42 13.97 55.49 0.78 -26.65 16
24 Si 0.88 21.84 24.40 -169.99 -4.15 17.69 16
25 H -0.29 -6.89 6.66 56.52 0.38 -6.51 16
26 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16
27 H -0.27 -6.55 6.65 56.52 0.38 -6.17 16
28 C 0.13 2.73 4.23 -3.67 -0.02 2.71 16
29 C -0.10 -1.60 5.37 -26.46 -0.14 -1.74 16
30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16
31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16
32 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16
33 H 0.10 0.80 7.70 -51.93 -0.40 0.40 16
34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
36 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16
37 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16
38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16
39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16
40 H 0.40 4.25 7.10 -40.82 -0.29 3.96 16
41 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16
42 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16
43 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16
44 H 0.06 0.76 8.10 -51.93 -0.42 0.33 16
45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
46 H 0.07 1.22 7.92 -51.93 -0.41 0.81 16
47 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16
48 H 0.03 0.53 7.27 -51.93 -0.38 0.15 16
49 H 0.07 1.65 4.31 -51.93 -0.22 1.42 16
50 H 0.05 0.64 6.75 -51.93 -0.35 0.29 16
51 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16
LS Contribution 407.97 15.07 6.15 6.15
Total: -1.00 -32.52 407.97 -8.01 -40.53
By element:
Atomic # 1 Polarization: 10.19 SS G_CDS: -8.39 Total: 1.81 kcal
Atomic # 6 Polarization: -3.56 SS G_CDS: -2.35 Total: -5.91 kcal
Atomic # 7 Polarization: -53.59 SS G_CDS: 0.43 Total: -53.15 kcal
Atomic # 8 Polarization: -7.41 SS G_CDS: 0.29 Total: -7.12 kcal
Atomic # 14 Polarization: 21.84 SS G_CDS: -4.15 Total: 17.69 kcal
Total LS contribution 6.15 Total: 6.15 kcal
Total: -32.52 -8.01 -40.53 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001016668092.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 102.230 kcal
(2) G-P(sol) polarization free energy of solvation -32.524 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.706 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.535 kcal
(6) G-S(sol) free energy of system = (1) + (5) 61.696 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds