Wall clock time and date at job start Wed Apr 1 2020 04:39:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 N 1.30010 * 127.33734 * 2 1
4 4 O 1.20653 * 112.30404 * 180.02562 * 3 2 1
5 5 C 1.33496 * 113.15500 * 359.72497 * 4 3 2
6 6 C 1.50700 * 126.83292 * 180.33288 * 5 4 3
7 7 C 1.53005 * 109.46970 * 300.14119 * 6 5 4
8 8 C 1.53009 * 109.47110 * 60.13623 * 6 5 4
9 9 C 1.37359 * 106.34261 * 0.44348 * 5 4 3
10 10 C 1.47388 * 128.56878 * 179.85858 * 9 5 4
11 11 O 1.21616 * 120.00339 * 269.70922 * 10 9 5
12 12 N 1.34777 * 120.00374 * 89.97979 * 10 9 5
13 13 C 1.46500 * 120.00553 * 179.72791 * 12 10 9
14 14 H 1.08995 * 115.55020 * 350.57883 * 13 12 10
15 15 C 1.53031 * 117.50483 * 136.26706 * 13 12 10
16 16 C 1.52814 * 117.50063 * 204.89574 * 13 12 10
17 17 C 1.53192 * 117.71275 * 144.89827 * 16 13 12
18 18 C 1.53340 * 108.77067 * 158.88912 * 17 16 13
19 19 N 1.46838 * 108.81721 * 51.30897 * 18 17 16
20 20 C 1.36933 * 120.38530 * 123.12616 * 19 18 17
21 21 H 1.08011 * 119.99790 * 331.79610 * 20 19 18
22 22 C 1.38808 * 120.00340 * 151.79811 * 20 19 18
23 23 N 1.31621 * 120.00103 * 159.29622 * 22 20 19
24 24 Si 1.86796 * 120.00150 * 339.29717 * 22 20 19
25 25 H 1.48500 * 109.47264 * 94.24672 * 24 22 20
26 26 H 1.48496 * 109.47499 * 214.24706 * 24 22 20
27 27 H 1.48498 * 109.46900 * 334.24724 * 24 22 20
28 28 C 1.46850 * 119.23332 * 303.09907 * 19 18 17
29 29 C 1.53180 * 117.71943 * 0.14153 * 16 13 12
30 30 H 1.09005 * 109.46757 * 269.95563 * 1 2 3
31 31 H 1.08999 * 109.46856 * 29.94875 * 1 2 3
32 32 H 1.08998 * 109.47605 * 149.95357 * 1 2 3
33 33 H 1.08994 * 109.47363 * 180.13616 * 6 5 4
34 34 H 1.09005 * 109.46663 * 299.99687 * 7 6 5
35 35 H 1.08998 * 109.47336 * 59.99098 * 7 6 5
36 36 H 1.08997 * 109.47407 * 180.02562 * 7 6 5
37 37 H 1.08995 * 109.46783 * 60.00098 * 8 6 5
38 38 H 1.08997 * 109.46880 * 180.02562 * 8 6 5
39 39 H 1.09006 * 109.46563 * 300.00221 * 8 6 5
40 40 H 0.97008 * 119.99619 * 359.72125 * 12 10 9
41 41 H 1.08997 * 117.50291 * 214.95798 * 15 13 12
42 42 H 1.09005 * 117.49789 * 0.02562 * 15 13 12
43 43 H 1.08995 * 109.58563 * 278.67888 * 17 16 13
44 44 H 1.09000 * 109.58514 * 39.10048 * 17 16 13
45 45 H 1.09002 * 109.58192 * 291.50645 * 18 17 16
46 46 H 1.08998 * 109.58265 * 171.11122 * 18 17 16
47 47 H 0.97003 * 120.00072 * 179.97438 * 23 22 20
48 48 H 1.09005 * 109.57762 * 297.10550 * 28 19 18
49 49 H 1.09000 * 109.58190 * 176.70409 * 28 19 18
50 50 H 1.09000 * 109.58446 * 320.90399 * 29 16 13
51 51 H 1.09002 * 109.58777 * 81.32458 * 29 16 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2955 1.0337 0.0000
4 8 3.4608 0.7207 -0.0005
5 6 3.6494 -0.6008 0.0050
6 6 4.9711 -1.3248 0.0130
7 6 5.7715 -0.9389 -1.2326
8 6 5.7583 -0.9353 1.2659
9 6 2.3991 -1.1697 -0.0008
10 6 2.0400 -2.5992 -0.0011
11 8 1.8919 -3.1888 -1.0544
12 7 1.8703 -3.2517 1.1659
13 6 1.5075 -4.6711 1.1656
14 1 1.2374 -5.0870 0.1950
15 6 2.2392 -5.5878 2.1484
16 6 0.7770 -5.2129 2.3935
17 6 -0.2818 -6.2976 2.1716
18 6 -0.4961 -7.0547 3.4878
19 7 -0.7475 -6.0816 4.5583
20 6 -1.8944 -6.1523 5.3031
21 1 -2.7919 -6.5732 4.8741
22 6 -1.9037 -5.6831 6.6095
23 7 -3.0434 -5.3672 7.1872
24 14 -0.2988 -5.4999 7.5475
25 1 0.1992 -4.1077 7.4094
26 1 -0.5269 -5.8038 8.9831
27 1 0.7073 -6.4425 6.9959
28 6 0.2454 -5.0322 4.8214
29 6 0.4746 -4.2340 3.5323
30 1 -0.3633 -0.0008 1.0277
31 1 -0.3633 0.8904 -0.5130
32 1 -0.3634 -0.8895 -0.5145
33 1 4.7962 -2.4006 0.0137
34 1 5.2107 -1.2163 -2.1251
35 1 5.9464 0.1370 -1.2332
36 1 6.7273 -1.4628 -1.2270
37 1 5.1881 -1.2102 2.1532
38 1 6.7144 -1.4586 1.2715
39 1 5.9332 0.1406 1.2652
40 1 1.9885 -2.7815 2.0061
41 1 2.4501 -6.6069 1.8246
42 1 2.9903 -5.1346 2.7956
43 1 -1.2183 -5.8356 1.8591
44 1 0.0605 -6.9905 1.4029
45 1 0.3953 -7.6357 3.7242
46 1 -1.3534 -7.7207 3.3907
47 1 -3.0499 -5.0396 8.1003
48 1 1.1828 -5.4880 5.1404
49 1 -0.1240 -4.3672 5.6020
50 1 1.3187 -3.5576 3.6664
51 1 -0.4212 -3.6608 3.2932
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001016668092.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:39:25
Heat of formation + Delta-G solvation = 41.835801 kcal
Electronic energy + Delta-G solvation = -31452.950972 eV
Core-core repulsion = 27355.918329 eV
Total energy + Delta-G solvation = -4097.032644 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-46.02624 -41.21944 -39.85065 -37.33688 -37.06786 -35.69918 -34.58427 -33.54619
-32.08184 -31.93803 -30.27484 -29.83383 -28.11353 -26.25143 -25.93294 -24.54613
-23.95572 -23.25694 -22.61158 -21.65238 -20.50650 -19.93881 -19.12354 -18.84590
-18.38471 -17.55970 -17.38748 -17.03324 -16.66075 -15.93511 -15.67802 -15.49975
-15.40688 -15.31282 -14.91094 -14.44543 -14.42700 -14.35012 -14.28335 -14.23903
-14.14916 -13.85493 -13.64742 -13.46888 -13.08336 -12.99940 -12.68552 -12.60382
-12.44094 -12.35934 -12.27434 -12.26102 -12.09348 -11.88058 -11.61083 -11.56298
-11.48303 -11.27847 -11.02263 -10.80652 -10.64621 -10.53472 -9.78585 -8.85084
-8.15405 -5.46796 0.19139 0.75596 1.12983 1.29707 1.42662 1.52005
1.64968 2.09524 2.42755 2.86854 2.99607 3.07803 3.09299 3.37212
3.58102 3.69360 3.69935 3.80180 3.91437 3.95117 4.01834 4.02068
4.11483 4.37212 4.38671 4.49029 4.50419 4.54347 4.60883 4.63818
4.70889 4.75797 4.80994 4.84354 4.86407 4.89249 4.93369 4.96176
4.98340 5.00849 5.05070 5.14599 5.22615 5.27532 5.31061 5.31458
5.39102 5.53051 5.89699 6.14739 6.28830 6.94571 6.95802 7.10628
7.66029 8.05638 9.04808
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013596 B = 0.002754 C = 0.002703
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2058.864626 B =10165.671753 C =10355.119985
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 C 0.051 3.949
3 N -0.374 5.374
4 O 0.098 5.902
5 C 0.043 3.957
6 C -0.017 4.017
7 C -0.148 4.148
8 C -0.147 4.147
9 C -0.273 4.273
10 C 0.612 3.388
11 O -0.560 6.560
12 N -0.674 5.674
13 C 0.082 3.918
14 H 0.131 0.869
15 C -0.158 4.158
16 C -0.119 4.119
17 C -0.089 4.089
18 C 0.148 3.852
19 N -0.619 5.619
20 C -0.248 4.248
21 H 0.047 0.953
22 C -0.038 4.038
23 N -0.960 5.960
24 Si 0.949 3.051
25 H -0.274 1.274
26 H -0.315 1.315
27 H -0.257 1.257
28 C 0.127 3.873
29 C -0.089 4.089
30 H 0.097 0.903
31 H 0.094 0.906
32 H 0.082 0.918
33 H 0.102 0.898
34 H 0.049 0.951
35 H 0.069 0.931
36 H 0.093 0.907
37 H 0.059 0.941
38 H 0.092 0.908
39 H 0.067 0.933
40 H 0.412 0.588
41 H 0.118 0.882
42 H 0.109 0.891
43 H 0.049 0.951
44 H 0.089 0.911
45 H 0.041 0.959
46 H 0.052 0.948
47 H 0.261 0.739
48 H 0.039 0.961
49 H 0.045 0.955
50 H 0.080 0.920
51 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.997 8.587 -15.764 27.625
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.111 4.111
3 N -0.082 5.082
4 O 0.038 5.962
5 C -0.021 4.021
6 C -0.037 4.037
7 C -0.205 4.205
8 C -0.204 4.204
9 C -0.281 4.281
10 C 0.397 3.603
11 O -0.439 6.439
12 N -0.323 5.323
13 C -0.023 4.023
14 H 0.149 0.851
15 C -0.197 4.197
16 C -0.121 4.121
17 C -0.128 4.128
18 C 0.023 3.977
19 N -0.343 5.343
20 C -0.378 4.378
21 H 0.065 0.935
22 C -0.233 4.233
23 N -0.606 5.606
24 Si 0.778 3.222
25 H -0.201 1.201
26 H -0.244 1.244
27 H -0.181 1.181
28 C 0.002 3.998
29 C -0.128 4.128
30 H 0.116 0.884
31 H 0.112 0.888
32 H 0.100 0.900
33 H 0.120 0.880
34 H 0.069 0.931
35 H 0.088 0.912
36 H 0.112 0.888
37 H 0.078 0.922
38 H 0.111 0.889
39 H 0.087 0.913
40 H 0.249 0.751
41 H 0.137 0.863
42 H 0.127 0.873
43 H 0.067 0.933
44 H 0.108 0.892
45 H 0.059 0.941
46 H 0.071 0.929
47 H 0.069 0.931
48 H 0.057 0.943
49 H 0.064 0.936
50 H 0.098 0.902
51 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges 20.640 9.526 -16.397 28.029
hybrid contribution -0.427 -0.389 1.259 1.385
sum 20.213 9.137 -15.138 26.855
Atomic orbital electron populations
1.20344 0.83921 1.04750 1.04824 1.25113 0.99511 0.86313 1.00162
1.73623 0.89540 1.23765 1.21269 1.84491 1.21086 1.22887 1.67695
1.25189 0.97482 0.83342 0.96117 1.20125 0.85912 0.98172 0.99455
1.21897 1.00612 1.03146 0.94871 1.21910 1.00748 1.03106 0.94656
1.21860 0.93646 0.94714 1.17846 1.16837 0.75869 0.83947 0.83616
1.90805 1.51952 1.68696 1.32443 1.45301 1.68303 1.10368 1.08281
1.21799 1.03922 0.80365 0.96234 0.85139 1.23713 0.93784 1.01049
1.01107 1.21792 0.94712 0.99461 0.96099 1.21532 0.97088 0.96332
0.97861 1.21048 0.98963 0.90656 0.87050 1.44412 1.20502 1.30734
1.38666 1.18872 0.88417 1.37200 0.93283 0.93482 1.25959 0.99458
1.00256 0.97595 1.69986 1.27632 1.48398 1.14609 0.85849 0.81408
0.78413 0.76499 1.20059 1.24383 1.18076 1.21324 0.91841 0.90327
0.96322 1.21451 1.00836 0.96461 0.94039 0.88448 0.88766 0.89967
0.87972 0.93140 0.91194 0.88782 0.92172 0.88930 0.91347 0.75110
0.86338 0.87304 0.93256 0.89230 0.94068 0.92906 0.93054 0.94266
0.93636 0.90203 0.92939
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.52 10.49 71.24 0.75 -0.77 16
2 C 0.05 1.17 7.59 45.16 0.34 1.51 16
3 N -0.37 -8.97 12.01 -44.78 -0.54 -9.50 16
4 O 0.10 2.07 11.06 76.96 0.85 2.92 16
5 C 0.04 0.80 6.06 25.48 0.15 0.95 16
6 C -0.02 -0.21 3.33 -11.54 -0.04 -0.25 16
7 C -0.15 -1.51 9.18 71.98 0.66 -0.85 16
8 C -0.15 -1.28 9.18 71.99 0.66 -0.62 16
9 C -0.27 -6.12 6.24 -18.75 -0.12 -6.23 16
10 C 0.61 14.92 7.30 86.65 0.63 15.56 16
11 O -0.56 -17.52 16.67 -4.08 -0.07 -17.59 16
12 N -0.67 -14.01 5.34 -446.08 -2.38 -16.40 16
13 C 0.08 1.81 6.13 44.94 0.28 2.08 16
14 H 0.13 3.13 7.40 -2.39 -0.02 3.11 16
15 C -0.16 -3.06 9.87 30.58 0.30 -2.75 16
16 C -0.12 -3.05 1.94 -52.14 -0.10 -3.15 16
17 C -0.09 -2.56 5.83 30.77 0.18 -2.38 16
18 C 0.15 5.31 6.51 86.43 0.56 5.87 16
19 N -0.62 -27.86 2.71 -698.93 -1.89 -29.75 16
20 C -0.25 -13.87 10.00 84.03 0.84 -13.03 16
21 H 0.05 2.91 8.06 -2.90 -0.02 2.89 16
22 C -0.04 -2.21 5.23 84.86 0.44 -1.77 16
23 N -0.96 -60.22 13.97 21.65 0.30 -59.92 16
24 Si 0.95 45.48 24.40 68.60 1.67 47.15 16
25 H -0.27 -12.26 6.66 99.48 0.66 -11.60 16
26 H -0.31 -15.51 7.11 99.48 0.71 -14.81 16
27 H -0.26 -11.57 6.65 99.48 0.66 -10.91 16
28 C 0.13 4.97 4.23 86.43 0.37 5.34 16
29 C -0.09 -2.67 5.37 30.77 0.17 -2.50 16
30 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16
31 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16
32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16
33 H 0.10 1.32 7.70 -2.39 -0.02 1.30 16
34 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16
35 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16
36 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16
37 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16
38 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16
39 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16
40 H 0.41 7.36 7.10 -92.70 -0.66 6.70 16
41 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16
42 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16
43 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16
44 H 0.09 2.02 8.10 -2.39 -0.02 2.00 16
45 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16
46 H 0.05 1.99 7.92 -2.39 -0.02 1.97 16
47 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16
48 H 0.04 1.45 7.27 -2.38 -0.02 1.43 16
49 H 0.05 2.02 4.31 -2.39 -0.01 2.01 16
50 H 0.08 1.87 6.75 -2.39 -0.02 1.85 16
51 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16
Total: -1.00 -72.99 407.97 4.21 -68.78
By element:
Atomic # 1 Polarization: 17.12 SS G_CDS: 0.19 Total: 17.31 kcal
Atomic # 6 Polarization: -9.08 SS G_CDS: 6.08 Total: -3.01 kcal
Atomic # 7 Polarization: -111.06 SS G_CDS: -4.51 Total: -115.57 kcal
Atomic # 8 Polarization: -15.45 SS G_CDS: 0.78 Total: -14.67 kcal
Atomic # 14 Polarization: 45.48 SS G_CDS: 1.67 Total: 47.15 kcal
Total: -72.99 4.21 -68.78 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001016668092.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 110.614 kcal
(2) G-P(sol) polarization free energy of solvation -72.990 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.624 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.212 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.779 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.836 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds