Wall clock time and date at job start Wed Apr 1 2020 04:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30181 * 126.79606 * 2 1 4 4 O 1.20926 * 111.60027 * 180.25072 * 3 2 1 5 5 C 1.34046 * 111.56803 * 359.74846 * 4 3 2 6 6 C 1.50700 * 126.77628 * 179.97438 * 5 4 3 7 7 C 1.35450 * 106.44327 * 359.97438 * 5 4 3 8 8 C 1.50702 * 128.00333 * 179.97438 * 7 5 4 9 9 H 1.08995 * 109.47482 * 4.70309 * 8 7 5 10 10 C 1.52999 * 109.47173 * 244.69734 * 8 7 5 11 11 C 1.50698 * 109.46788 * 124.70304 * 8 7 5 12 12 O 1.21281 * 120.00359 * 359.97438 * 11 8 7 13 13 N 1.34780 * 120.00104 * 180.02562 * 11 8 7 14 14 C 1.46504 * 120.00315 * 180.02562 * 13 11 8 15 15 H 1.08997 * 115.55999 * 350.70585 * 14 13 11 16 16 C 1.53039 * 117.50155 * 136.41194 * 14 13 11 17 17 C 1.52819 * 117.50038 * 204.99691 * 14 13 11 18 18 C 1.53187 * 117.70911 * 144.89781 * 17 14 13 19 19 C 1.53348 * 108.76576 * 158.88191 * 18 17 14 20 20 N 1.46845 * 108.81390 * 51.30679 * 19 18 17 21 21 C 1.36933 * 120.37756 * 123.11185 * 20 19 18 22 22 H 1.07996 * 120.00294 * 331.05063 * 21 20 19 23 23 C 1.38815 * 120.00170 * 151.05169 * 21 20 19 24 24 N 1.31621 * 120.00070 * 345.15677 * 23 21 20 25 25 Si 1.86798 * 120.00098 * 165.15524 * 23 21 20 26 26 H 1.48503 * 109.46989 * 180.02562 * 25 23 21 27 27 H 1.48491 * 109.47352 * 300.00208 * 25 23 21 28 28 H 1.48498 * 109.47052 * 60.00280 * 25 23 21 29 29 C 1.46839 * 119.24162 * 303.38003 * 20 19 18 30 30 C 1.52867 * 109.07746 * 56.58301 * 29 20 19 31 31 H 1.09003 * 109.47484 * 275.34651 * 1 2 3 32 32 H 1.08998 * 109.47501 * 35.35092 * 1 2 3 33 33 H 1.08996 * 109.47025 * 155.34770 * 1 2 3 34 34 H 1.08997 * 109.47262 * 269.99372 * 6 5 4 35 35 H 1.08999 * 109.47118 * 29.99789 * 6 5 4 36 36 H 1.09008 * 109.46481 * 149.99597 * 6 5 4 37 37 H 1.09000 * 109.46993 * 182.78971 * 10 8 7 38 38 H 1.08998 * 109.47451 * 302.79462 * 10 8 7 39 39 H 1.09000 * 109.46840 * 62.79432 * 10 8 7 40 40 H 0.97002 * 119.99843 * 359.97438 * 13 11 8 41 41 H 1.08994 * 117.50593 * 0.02562 * 16 14 13 42 42 H 1.08998 * 117.52459 * 214.94256 * 16 14 13 43 43 H 1.08997 * 109.58498 * 39.09934 * 18 17 14 44 44 H 1.08994 * 109.58676 * 278.66399 * 18 17 14 45 45 H 1.09003 * 109.58294 * 291.51427 * 19 18 17 46 46 H 1.08995 * 109.58507 * 171.10567 * 19 18 17 47 47 H 0.96996 * 120.00476 * 179.97438 * 24 23 21 48 48 H 1.08997 * 109.58302 * 176.42177 * 29 20 19 49 49 H 1.08998 * 109.58103 * 296.82141 * 29 20 19 50 50 H 1.08999 * 109.67107 * 189.04946 * 30 29 20 51 51 H 1.08995 * 109.44617 * 68.65145 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2867 1.0425 0.0000 4 8 3.4537 0.7255 -0.0049 5 6 3.6025 -0.6067 -0.0035 6 6 4.9022 -1.3694 -0.0088 7 6 2.3540 -1.1319 0.0038 8 6 1.9592 -2.5863 0.0077 9 1 2.8528 -3.2052 0.0880 10 6 1.2237 -2.9186 -1.2921 11 6 1.0531 -2.8576 1.1809 12 8 0.7575 -1.9587 1.9395 13 7 0.5721 -4.0995 1.3878 14 6 -0.3092 -4.3632 2.5281 15 1 -0.4028 -3.5502 3.2480 16 6 -1.5432 -5.2340 2.2809 17 6 -0.3572 -5.7924 3.0671 18 6 -0.5298 -5.9784 4.5778 19 6 -1.0729 -7.3879 4.8424 20 7 -0.2273 -8.3610 4.1394 21 6 0.3830 -9.3742 4.8295 22 1 0.6522 -9.2358 5.8661 23 6 0.6556 -10.5792 4.1965 24 7 0.0815 -10.8632 3.0466 25 14 1.8372 -11.7976 4.9766 26 1 1.9569 -12.9963 4.1083 27 1 3.1711 -11.1639 5.1313 28 1 1.3232 -12.2011 6.3101 29 6 -0.0387 -8.2316 2.6889 30 6 0.5204 -6.8429 2.3796 31 1 -0.3634 0.0958 1.0232 32 1 -0.3634 0.8381 -0.5946 33 1 -0.3633 -0.9340 -0.4286 34 1 5.2103 -1.5551 -1.0377 35 1 5.6686 -0.7848 0.5001 36 1 4.7677 -2.3200 0.5074 37 1 0.8948 -3.9575 -1.2681 38 1 0.3574 -2.2655 -1.3967 39 1 1.8951 -2.7696 -2.1378 40 1 0.8088 -4.8186 0.7814 41 1 -1.6990 -5.6110 1.2702 42 1 -2.4487 -4.9944 2.8384 43 1 -1.2332 -5.2382 4.9591 44 1 0.4338 -5.8592 5.0731 45 1 -2.0963 -7.4602 4.4742 46 1 -1.0525 -7.5923 5.9128 47 1 0.2722 -11.7050 2.6042 48 1 0.6622 -8.9911 2.3425 49 1 -0.9961 -8.3576 2.1834 50 1 0.5139 -6.6763 1.3025 51 1 1.5405 -6.7703 2.7566 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016872974.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:18 Heat of formation + Delta-G solvation = 60.845835 kcal Electronic energy + Delta-G solvation = -31264.674646 eV Core-core repulsion = 27168.466339 eV Total energy + Delta-G solvation = -4096.208307 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.05156 -40.21192 -38.62425 -35.94883 -35.41087 -34.00971 -33.34227 -32.06397 -31.21253 -30.17087 -28.85266 -28.26502 -27.83504 -25.23914 -24.37593 -23.10086 -22.48299 -21.57896 -20.74569 -20.33057 -20.07718 -18.27373 -17.86148 -17.41223 -16.79067 -16.59982 -15.94229 -15.44467 -14.89060 -14.73444 -14.36031 -14.12908 -14.03978 -13.67397 -13.61367 -13.44095 -13.41538 -13.21152 -13.04790 -12.95550 -12.72437 -12.63520 -12.55237 -12.31170 -12.16079 -11.85331 -11.73337 -11.53383 -11.37727 -10.99983 -10.94953 -10.75345 -10.53940 -10.32283 -10.03051 -9.96991 -9.84459 -9.74593 -9.61368 -9.42110 -9.27091 -8.50215 -8.47686 -6.66182 -5.81347 -3.26260 1.28502 2.06678 2.50691 2.91134 3.09441 3.35557 3.41129 3.42525 4.00988 4.13626 4.25784 4.35201 4.46585 4.52799 4.71260 4.80311 4.91669 4.96002 5.06294 5.08800 5.10710 5.11873 5.23872 5.33264 5.37172 5.43213 5.48116 5.48864 5.53562 5.60344 5.63520 5.70799 5.78651 5.85752 6.01639 6.07033 6.08406 6.09338 6.25176 6.41425 6.52879 6.55074 6.62569 6.68827 6.80307 6.96973 7.32026 7.46355 7.64492 7.75738 8.16208 8.17581 8.44232 9.19501 9.82403 10.38690 11.26070 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017631 B = 0.002320 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.746746 B =12066.281642 C =12773.858326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.055 3.945 3 N -0.374 5.374 4 O 0.093 5.907 5 C -0.028 4.028 6 C -0.075 4.075 7 C -0.181 4.181 8 C -0.032 4.032 9 H 0.109 0.891 10 C -0.145 4.145 11 C 0.519 3.481 12 O -0.531 6.531 13 N -0.693 5.693 14 C 0.070 3.930 15 H 0.130 0.870 16 C -0.182 4.182 17 C -0.097 4.097 18 C -0.098 4.098 19 C 0.149 3.851 20 N -0.590 5.590 21 C -0.251 4.251 22 H 0.064 0.936 23 C 0.002 3.998 24 N -0.905 5.905 25 Si 0.903 3.097 26 H -0.290 1.290 27 H -0.284 1.284 28 H -0.283 1.283 29 C 0.172 3.828 30 C -0.104 4.104 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.401 0.599 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.020 0.980 46 H 0.055 0.945 47 H 0.254 0.746 48 H 0.094 0.906 49 H 0.016 0.984 50 H 0.043 0.957 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.379 17.114 -10.488 20.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.104 4.104 3 N -0.081 5.081 4 O 0.031 5.969 5 C -0.092 4.092 6 C -0.133 4.133 7 C -0.185 4.185 8 C -0.054 4.054 9 H 0.127 0.873 10 C -0.202 4.202 11 C 0.305 3.695 12 O -0.407 6.407 13 N -0.343 5.343 14 C -0.036 4.036 15 H 0.148 0.852 16 C -0.221 4.221 17 C -0.099 4.099 18 C -0.137 4.137 19 C 0.023 3.977 20 N -0.312 5.312 21 C -0.381 4.381 22 H 0.082 0.918 23 C -0.197 4.197 24 N -0.549 5.549 25 Si 0.733 3.267 26 H -0.216 1.216 27 H -0.211 1.211 28 H -0.209 1.209 29 C 0.046 3.954 30 C -0.143 4.143 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.237 0.763 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.038 0.962 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.112 0.888 49 H 0.035 0.965 50 H 0.062 0.938 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.979 18.921 -10.032 21.783 hybrid contribution 0.568 -1.841 0.073 1.927 sum 4.547 17.081 -9.958 20.288 Atomic orbital electron populations 1.20209 0.86145 1.02690 1.03883 1.23254 0.98808 0.87948 1.00414 1.73814 0.89183 1.23855 1.21290 1.84794 1.21789 1.22129 1.68220 1.24173 0.97882 0.84155 1.02960 1.20363 0.90155 0.98696 1.04046 1.20240 0.91820 0.95821 1.10624 1.19536 0.99462 0.91353 0.95005 0.87296 1.21855 1.00927 1.02375 0.95068 1.20327 0.80693 0.82483 0.86033 1.90696 1.58933 1.44084 1.47010 1.45383 1.49248 1.10400 1.29234 1.21867 0.94464 0.95941 0.91297 0.85212 1.23521 0.93160 1.03670 1.01703 1.21964 0.99226 0.92500 0.96178 1.21687 1.00922 0.99392 0.91744 1.20859 0.92889 0.87738 0.96261 1.43943 1.53826 1.29697 1.03719 1.19173 1.31744 0.91091 0.96108 0.91829 1.25066 1.00042 0.96633 0.97927 1.69982 1.43448 1.23673 1.17819 0.86359 0.81258 0.80521 0.78559 1.21631 1.21050 1.20876 1.20689 0.98685 0.91728 0.84300 1.21734 0.98435 0.97649 0.96499 0.89409 0.91190 0.90584 0.89309 0.89675 0.89091 0.91133 0.91499 0.91052 0.76276 0.88935 0.88540 0.92904 0.91882 0.96245 0.92688 0.93591 0.88848 0.96547 0.93811 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 9.00 36.00 0.32 -0.46 16 2 C 0.05 0.70 6.70 -82.10 -0.55 0.14 16 3 N -0.37 -5.15 12.07 33.42 0.40 -4.75 16 4 O 0.09 1.14 11.20 17.16 0.19 1.34 16 5 C -0.03 -0.28 7.49 -35.30 -0.26 -0.54 16 6 C -0.08 -0.43 10.20 36.01 0.37 -0.06 16 7 C -0.18 -1.99 4.54 -104.42 -0.47 -2.47 16 8 C -0.03 -0.29 2.99 -92.92 -0.28 -0.57 16 9 H 0.11 0.77 7.10 -51.93 -0.37 0.40 16 10 C -0.14 -1.02 9.06 37.16 0.34 -0.68 16 11 C 0.52 6.31 6.81 -10.99 -0.07 6.23 16 12 O -0.53 -8.33 13.48 5.56 0.07 -8.25 16 13 N -0.69 -8.06 5.22 -53.88 -0.28 -8.34 16 14 C 0.07 0.95 6.14 -68.00 -0.42 0.54 16 15 H 0.13 1.93 7.40 -51.93 -0.38 1.54 16 16 C -0.18 -2.48 9.87 -26.79 -0.26 -2.75 16 17 C -0.10 -1.52 1.94 -154.48 -0.30 -1.82 16 18 C -0.10 -1.65 5.83 -26.45 -0.15 -1.80 16 19 C 0.15 3.02 6.52 -3.67 -0.02 3.00 16 20 N -0.59 -14.22 2.95 -172.56 -0.51 -14.72 16 21 C -0.25 -6.71 9.56 -15.06 -0.14 -6.85 16 22 H 0.06 1.67 7.87 -52.49 -0.41 1.26 16 23 C 0.00 0.04 4.96 -17.43 -0.09 -0.04 16 24 N -0.90 -25.40 11.05 55.49 0.61 -24.78 16 25 Si 0.90 21.16 29.58 -169.99 -5.03 16.13 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 29 C 0.17 3.86 5.35 -3.93 -0.02 3.83 16 30 C -0.10 -1.79 5.36 -26.70 -0.14 -1.94 16 31 H 0.09 1.07 7.68 -51.93 -0.40 0.68 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.74 5.74 -51.93 -0.30 0.44 16 34 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.46 7.33 -51.92 -0.38 0.08 16 37 H 0.07 0.42 7.49 -51.93 -0.39 0.03 16 38 H 0.07 0.51 5.87 -51.93 -0.30 0.21 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.40 3.98 6.50 -40.82 -0.27 3.71 16 41 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.05 0.78 8.10 -51.93 -0.42 0.35 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.05 1.10 7.92 -51.93 -0.41 0.69 16 47 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 48 H 0.09 2.37 5.85 -51.93 -0.30 2.06 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.04 0.63 6.75 -51.93 -0.35 0.28 16 51 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 400.51 15.07 6.04 6.04 Total: -1.00 -32.28 400.51 -8.72 -40.99 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -8.05 Total: 2.59 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -2.17 Total: -6.24 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 0.23 Total: -52.60 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: 0.27 Total: -6.91 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.28 -8.72 -40.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016872974.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.840 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds