Wall clock time and date at job start Wed Apr 1 2020 04:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30181 * 126.79606 * 2 1 4 4 O 1.20926 * 111.60027 * 180.25072 * 3 2 1 5 5 C 1.34046 * 111.56803 * 359.74846 * 4 3 2 6 6 C 1.50700 * 126.77628 * 179.97438 * 5 4 3 7 7 C 1.35450 * 106.44327 * 359.97438 * 5 4 3 8 8 C 1.50702 * 128.00333 * 179.97438 * 7 5 4 9 9 H 1.08995 * 109.47482 * 4.70309 * 8 7 5 10 10 C 1.52999 * 109.47173 * 244.69734 * 8 7 5 11 11 C 1.50698 * 109.46788 * 124.70304 * 8 7 5 12 12 O 1.21281 * 120.00359 * 359.97438 * 11 8 7 13 13 N 1.34780 * 120.00104 * 180.02562 * 11 8 7 14 14 C 1.46504 * 120.00315 * 180.02562 * 13 11 8 15 15 H 1.08997 * 115.55999 * 350.70585 * 14 13 11 16 16 C 1.53039 * 117.50155 * 136.41194 * 14 13 11 17 17 C 1.52819 * 117.50038 * 204.99691 * 14 13 11 18 18 C 1.53187 * 117.70911 * 144.89781 * 17 14 13 19 19 C 1.53348 * 108.76576 * 158.88191 * 18 17 14 20 20 N 1.46845 * 108.81390 * 51.30679 * 19 18 17 21 21 C 1.36933 * 120.37756 * 123.11185 * 20 19 18 22 22 H 1.07996 * 120.00294 * 331.05063 * 21 20 19 23 23 C 1.38815 * 120.00170 * 151.05169 * 21 20 19 24 24 N 1.31621 * 120.00070 * 345.15677 * 23 21 20 25 25 Si 1.86798 * 120.00098 * 165.15524 * 23 21 20 26 26 H 1.48503 * 109.46989 * 180.02562 * 25 23 21 27 27 H 1.48491 * 109.47352 * 300.00208 * 25 23 21 28 28 H 1.48498 * 109.47052 * 60.00280 * 25 23 21 29 29 C 1.46839 * 119.24162 * 303.38003 * 20 19 18 30 30 C 1.52867 * 109.07746 * 56.58301 * 29 20 19 31 31 H 1.09003 * 109.47484 * 275.34651 * 1 2 3 32 32 H 1.08998 * 109.47501 * 35.35092 * 1 2 3 33 33 H 1.08996 * 109.47025 * 155.34770 * 1 2 3 34 34 H 1.08997 * 109.47262 * 269.99372 * 6 5 4 35 35 H 1.08999 * 109.47118 * 29.99789 * 6 5 4 36 36 H 1.09008 * 109.46481 * 149.99597 * 6 5 4 37 37 H 1.09000 * 109.46993 * 182.78971 * 10 8 7 38 38 H 1.08998 * 109.47451 * 302.79462 * 10 8 7 39 39 H 1.09000 * 109.46840 * 62.79432 * 10 8 7 40 40 H 0.97002 * 119.99843 * 359.97438 * 13 11 8 41 41 H 1.08994 * 117.50593 * 0.02562 * 16 14 13 42 42 H 1.08998 * 117.52459 * 214.94256 * 16 14 13 43 43 H 1.08997 * 109.58498 * 39.09934 * 18 17 14 44 44 H 1.08994 * 109.58676 * 278.66399 * 18 17 14 45 45 H 1.09003 * 109.58294 * 291.51427 * 19 18 17 46 46 H 1.08995 * 109.58507 * 171.10567 * 19 18 17 47 47 H 0.96996 * 120.00476 * 179.97438 * 24 23 21 48 48 H 1.08997 * 109.58302 * 176.42177 * 29 20 19 49 49 H 1.08998 * 109.58103 * 296.82141 * 29 20 19 50 50 H 1.08999 * 109.67107 * 189.04946 * 30 29 20 51 51 H 1.08995 * 109.44617 * 68.65145 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2867 1.0425 0.0000 4 8 3.4537 0.7255 -0.0049 5 6 3.6025 -0.6067 -0.0035 6 6 4.9022 -1.3694 -0.0088 7 6 2.3540 -1.1319 0.0038 8 6 1.9592 -2.5863 0.0077 9 1 2.8528 -3.2052 0.0880 10 6 1.2237 -2.9186 -1.2921 11 6 1.0531 -2.8576 1.1809 12 8 0.7575 -1.9587 1.9395 13 7 0.5721 -4.0995 1.3878 14 6 -0.3092 -4.3632 2.5281 15 1 -0.4028 -3.5502 3.2480 16 6 -1.5432 -5.2340 2.2809 17 6 -0.3572 -5.7924 3.0671 18 6 -0.5298 -5.9784 4.5778 19 6 -1.0729 -7.3879 4.8424 20 7 -0.2273 -8.3610 4.1394 21 6 0.3830 -9.3742 4.8295 22 1 0.6522 -9.2358 5.8661 23 6 0.6556 -10.5792 4.1965 24 7 0.0815 -10.8632 3.0466 25 14 1.8372 -11.7976 4.9766 26 1 1.9569 -12.9963 4.1083 27 1 3.1711 -11.1639 5.1313 28 1 1.3232 -12.2011 6.3101 29 6 -0.0387 -8.2316 2.6889 30 6 0.5204 -6.8429 2.3796 31 1 -0.3634 0.0958 1.0232 32 1 -0.3634 0.8381 -0.5946 33 1 -0.3633 -0.9340 -0.4286 34 1 5.2103 -1.5551 -1.0377 35 1 5.6686 -0.7848 0.5001 36 1 4.7677 -2.3200 0.5074 37 1 0.8948 -3.9575 -1.2681 38 1 0.3574 -2.2655 -1.3967 39 1 1.8951 -2.7696 -2.1378 40 1 0.8088 -4.8186 0.7814 41 1 -1.6990 -5.6110 1.2702 42 1 -2.4487 -4.9944 2.8384 43 1 -1.2332 -5.2382 4.9591 44 1 0.4338 -5.8592 5.0731 45 1 -2.0963 -7.4602 4.4742 46 1 -1.0525 -7.5923 5.9128 47 1 0.2722 -11.7050 2.6042 48 1 0.6622 -8.9911 2.3425 49 1 -0.9961 -8.3576 2.1834 50 1 0.5139 -6.6763 1.3025 51 1 1.5405 -6.7703 2.7566 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016872974.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:17 Heat of formation + Delta-G solvation = 42.109771 kcal Electronic energy + Delta-G solvation = -31265.487102 eV Core-core repulsion = 27168.466339 eV Total energy + Delta-G solvation = -4097.020763 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -45.91576 -41.24337 -39.86195 -37.21942 -36.55592 -34.89149 -34.46224 -33.43107 -32.31739 -31.74311 -29.85622 -29.71375 -28.44584 -26.24081 -25.90914 -24.14496 -23.91459 -22.92151 -22.04235 -21.19166 -20.96819 -19.79616 -18.78090 -18.49450 -18.08536 -17.66786 -17.07463 -16.78112 -16.26387 -15.69617 -15.65657 -15.32717 -15.13515 -15.00375 -14.80255 -14.61669 -14.33960 -14.14837 -13.92997 -13.85292 -13.75246 -13.67591 -13.39383 -13.29687 -13.22944 -12.98878 -12.89171 -12.84751 -12.55004 -12.49388 -12.42982 -12.30413 -11.96275 -11.76729 -11.75355 -11.35043 -11.22669 -10.90801 -10.79389 -10.63317 -10.45645 -10.07101 -9.61932 -8.58315 -7.83237 -5.31072 0.50543 1.19399 1.48843 1.50019 1.56965 1.58071 2.11318 2.25702 2.53250 2.98412 3.21463 3.31392 3.54016 3.55502 3.67938 3.83850 3.86385 3.90243 4.01628 4.02523 4.15766 4.16857 4.29683 4.44929 4.55379 4.58194 4.63421 4.70199 4.72029 4.74060 4.75044 4.84905 4.89240 4.89713 4.93205 4.96285 5.01975 5.02955 5.10276 5.14115 5.23531 5.24468 5.33856 5.36574 5.39787 5.55441 5.58714 5.67838 5.84948 6.44475 6.55475 7.19911 7.24912 7.33987 7.91695 8.41733 9.20952 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017631 B = 0.002320 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.746746 B =12066.281642 C =12773.858326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.038 3.962 3 N -0.407 5.407 4 O 0.081 5.919 5 C -0.021 4.021 6 C -0.076 4.076 7 C -0.197 4.197 8 C -0.024 4.024 9 H 0.136 0.864 10 C -0.143 4.143 11 C 0.519 3.481 12 O -0.569 6.569 13 N -0.686 5.686 14 C 0.090 3.910 15 H 0.121 0.879 16 C -0.169 4.169 17 C -0.118 4.118 18 C -0.087 4.087 19 C 0.146 3.854 20 N -0.609 5.609 21 C -0.263 4.263 22 H 0.061 0.939 23 C -0.048 4.048 24 N -0.932 5.932 25 Si 0.964 3.036 26 H -0.293 1.293 27 H -0.278 1.278 28 H -0.279 1.279 29 C 0.178 3.822 30 C -0.087 4.087 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.086 0.914 40 H 0.412 0.588 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.077 0.923 44 H 0.052 0.948 45 H 0.017 0.983 46 H 0.049 0.951 47 H 0.250 0.750 48 H 0.060 0.940 49 H -0.003 1.003 50 H 0.075 0.925 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.409 17.440 -11.527 21.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.120 4.120 3 N -0.117 5.117 4 O 0.020 5.980 5 C -0.085 4.085 6 C -0.133 4.133 7 C -0.202 4.202 8 C -0.045 4.045 9 H 0.154 0.846 10 C -0.200 4.200 11 C 0.306 3.694 12 O -0.447 6.447 13 N -0.336 5.336 14 C -0.017 4.017 15 H 0.139 0.861 16 C -0.208 4.208 17 C -0.119 4.119 18 C -0.126 4.126 19 C 0.020 3.980 20 N -0.332 5.332 21 C -0.393 4.393 22 H 0.079 0.921 23 C -0.243 4.243 24 N -0.578 5.578 25 Si 0.793 3.207 26 H -0.219 1.219 27 H -0.205 1.205 28 H -0.205 1.205 29 C 0.052 3.948 30 C -0.126 4.126 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.131 0.869 35 H 0.113 0.887 36 H 0.121 0.879 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.105 0.895 40 H 0.250 0.750 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.096 0.904 44 H 0.071 0.929 45 H 0.035 0.965 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.078 0.922 49 H 0.015 0.985 50 H 0.093 0.907 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.019 19.259 -11.078 22.778 hybrid contribution 0.224 -1.918 0.432 1.979 sum 5.244 17.342 -10.646 21.013 Atomic orbital electron populations 1.20194 0.85620 1.03715 1.03002 1.23637 0.99531 0.88607 1.00249 1.73795 0.89898 1.24983 1.22994 1.84744 1.21282 1.23531 1.68451 1.24953 0.99371 0.83327 1.00849 1.20622 0.88180 0.98570 1.05914 1.20511 0.91880 0.96411 1.11378 1.19606 0.99928 0.90587 0.94411 0.84618 1.21887 1.00757 1.03026 0.94340 1.20880 0.80351 0.81844 0.86296 1.90694 1.60284 1.45192 1.48562 1.45315 1.48777 1.10819 1.28697 1.21608 0.94555 0.94006 0.91482 0.86093 1.23597 0.92997 1.02334 1.01860 1.21813 1.01113 0.93583 0.95426 1.21510 1.00723 0.97420 0.92991 1.20971 0.92414 0.88983 0.95604 1.44216 1.54599 1.29947 1.04452 1.19458 1.31657 0.91936 0.96286 0.92150 1.25755 1.01696 0.98287 0.98610 1.70134 1.44781 1.23896 1.19032 0.85390 0.79431 0.78262 0.77641 1.21877 1.20453 1.20491 1.20504 0.97013 0.93920 0.83345 1.21454 0.97676 0.94869 0.98612 0.91134 0.90295 0.89454 0.86858 0.88724 0.87884 0.89627 0.92357 0.89492 0.74986 0.87888 0.87675 0.90408 0.92944 0.96492 0.93212 0.94064 0.92202 0.98463 0.90665 0.93192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.47 9.00 71.23 0.64 -0.83 16 2 C 0.04 0.95 6.70 43.57 0.29 1.25 16 3 N -0.41 -11.24 12.07 -49.55 -0.60 -11.84 16 4 O 0.08 1.94 11.20 71.57 0.80 2.74 16 5 C -0.02 -0.39 7.49 25.04 0.19 -0.20 16 6 C -0.08 -0.63 10.20 71.24 0.73 0.10 16 7 C -0.20 -4.00 4.54 -19.74 -0.09 -4.09 16 8 C -0.02 -0.36 2.99 -12.29 -0.04 -0.40 16 9 H 0.14 1.35 7.10 -2.39 -0.02 1.33 16 10 C -0.14 -1.54 9.06 71.98 0.65 -0.89 16 11 C 0.52 11.41 6.81 87.66 0.60 12.01 16 12 O -0.57 -17.17 13.48 -3.03 -0.04 -17.21 16 13 N -0.69 -13.96 5.22 -442.75 -2.31 -16.27 16 14 C 0.09 2.23 6.14 44.94 0.28 2.51 16 15 H 0.12 3.35 7.40 -2.39 -0.02 3.33 16 16 C -0.17 -4.15 9.87 30.56 0.30 -3.85 16 17 C -0.12 -3.46 1.94 -52.17 -0.10 -3.56 16 18 C -0.09 -2.83 5.83 30.77 0.18 -2.65 16 19 C 0.15 5.90 6.52 86.43 0.56 6.46 16 20 N -0.61 -29.67 2.95 -699.86 -2.06 -31.73 16 21 C -0.26 -14.22 9.56 84.03 0.80 -13.41 16 22 H 0.06 3.22 7.87 -2.91 -0.02 3.20 16 23 C -0.05 -2.62 4.96 84.86 0.42 -2.20 16 24 N -0.93 -53.38 11.05 21.65 0.24 -53.14 16 25 Si 0.96 43.86 29.58 68.60 2.03 45.89 16 26 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 27 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 28 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 29 C 0.18 8.03 5.35 86.27 0.46 8.49 16 30 C -0.09 -2.88 5.36 30.61 0.16 -2.71 16 31 H 0.07 1.76 7.68 -2.39 -0.02 1.75 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.09 1.62 5.74 -2.39 -0.01 1.61 16 34 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.10 0.64 7.33 -2.38 -0.02 0.62 16 37 H 0.08 0.68 7.49 -2.39 -0.02 0.66 16 38 H 0.06 0.74 5.87 -2.39 -0.01 0.73 16 39 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.41 6.64 6.50 -92.71 -0.60 6.03 16 41 H 0.10 2.34 8.14 -2.39 -0.02 2.33 16 42 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.08 2.12 8.10 -2.39 -0.02 2.10 16 44 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.05 2.01 7.92 -2.39 -0.02 1.99 16 47 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 48 H 0.06 3.10 5.85 -2.39 -0.01 3.09 16 49 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 50 H 0.07 1.98 6.75 -2.39 -0.02 1.96 16 51 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -72.41 400.51 4.44 -67.97 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.35 Total: 17.60 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 6.04 Total: -3.99 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -4.73 Total: -112.99 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: 0.76 Total: -14.47 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -72.41 4.44 -67.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016872974.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.078 kcal (2) G-P(sol) polarization free energy of solvation -72.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds