Wall clock time and date at job start Wed Apr 1 2020 04:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30005 * 127.33641 * 2 1 4 4 O 1.20660 * 112.29948 * 179.97438 * 3 2 1 5 5 C 1.33493 * 113.15906 * 359.71749 * 4 3 2 6 6 C 1.50699 * 126.83277 * 180.30816 * 5 4 3 7 7 C 1.52997 * 109.46985 * 300.17515 * 6 5 4 8 8 C 1.53010 * 109.46947 * 60.17067 * 6 5 4 9 9 C 1.37358 * 106.33746 * 0.45163 * 5 4 3 10 10 C 1.47395 * 128.56346 * 179.85238 * 9 5 4 11 11 O 1.21608 * 120.00256 * 269.70476 * 10 9 5 12 12 N 1.34778 * 120.00138 * 89.70586 * 10 9 5 13 13 C 1.46496 * 120.00171 * 180.02562 * 12 10 9 14 14 C 1.53154 * 109.43475 * 120.08627 * 13 12 10 15 15 C 1.53696 * 108.87549 * 66.17453 * 14 13 12 16 16 H 1.09006 * 112.58167 * 187.92588 * 15 14 13 17 17 C 1.54602 * 107.83366 * 312.22873 * 15 14 13 18 18 C 1.54307 * 104.85160 * 88.61348 * 17 15 14 19 19 C 1.54869 * 104.62880 * 0.08297 * 18 17 15 20 20 H 1.08997 * 112.70495 * 147.03216 * 19 18 17 21 21 C 1.53148 * 109.43351 * 240.30651 * 13 12 10 22 22 N 1.48296 * 104.30194 * 25.05999 * 19 18 17 23 23 C 1.36936 * 128.20857 * 138.39772 * 22 19 18 24 24 H 1.08003 * 120.00296 * 192.93683 * 23 22 19 25 25 C 1.38812 * 120.00080 * 12.94726 * 23 22 19 26 26 N 1.31624 * 120.00093 * 4.63150 * 25 23 22 27 27 Si 1.86802 * 119.99987 * 184.62542 * 25 23 22 28 28 H 1.48505 * 109.46760 * 94.98518 * 27 25 23 29 29 H 1.48504 * 109.47287 * 214.97903 * 27 25 23 30 30 H 1.48497 * 109.47415 * 334.98502 * 27 25 23 31 31 H 1.08997 * 109.47084 * 270.03973 * 1 2 3 32 32 H 1.09002 * 109.46997 * 30.03495 * 1 2 3 33 33 H 1.08994 * 109.47526 * 150.03710 * 1 2 3 34 34 H 1.08997 * 109.47250 * 180.17089 * 6 5 4 35 35 H 1.08997 * 109.47160 * 60.00158 * 7 6 5 36 36 H 1.09010 * 109.46860 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.47219 * 299.99338 * 7 6 5 38 38 H 1.09000 * 109.46663 * 59.99769 * 8 6 5 39 39 H 1.08995 * 109.46853 * 179.97438 * 8 6 5 40 40 H 1.09003 * 109.47115 * 300.00546 * 8 6 5 41 41 H 0.96999 * 119.99834 * 359.97438 * 12 10 9 42 42 H 1.09004 * 109.40200 * 0.19677 * 13 12 10 43 43 H 1.08994 * 109.57261 * 306.35278 * 14 13 12 44 44 H 1.08998 * 109.56442 * 185.99190 * 14 13 12 45 45 H 1.09001 * 110.38366 * 207.49030 * 17 15 14 46 46 H 1.08998 * 110.38057 * 329.73699 * 17 15 14 47 47 H 1.09002 * 110.38419 * 118.87360 * 18 17 15 48 48 H 1.08999 * 110.38376 * 241.23497 * 18 17 15 49 49 H 1.09001 * 109.56645 * 174.00558 * 21 13 12 50 50 H 1.08999 * 109.66974 * 53.70191 * 21 13 12 51 51 H 0.96993 * 120.00165 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7206 0.0005 5 6 3.6494 -0.6009 0.0070 6 6 4.9711 -1.3248 0.0159 7 6 5.7721 -0.9392 -1.2293 8 6 5.7576 -0.9351 1.2692 9 6 2.3991 -1.1697 0.0006 10 6 2.0400 -2.5992 0.0008 11 8 1.8927 -3.1893 -1.0523 12 7 1.8748 -3.2524 1.1680 13 6 1.5184 -4.6734 1.1682 14 6 2.6058 -5.4714 1.8937 15 6 2.6095 -5.0716 3.3777 16 1 3.4495 -5.4999 3.9246 17 6 2.5906 -3.5275 3.4521 18 6 1.0946 -3.1494 3.4438 19 6 0.3490 -4.5046 3.3671 20 1 -0.6023 -4.4921 3.8990 21 6 0.1768 -4.8621 1.8823 22 7 1.3028 -5.4807 3.9473 23 6 1.0395 -6.5145 4.8059 24 1 1.8511 -7.0166 5.3116 25 6 -0.2705 -6.9172 5.0262 26 7 -1.2518 -6.3678 4.3424 27 14 -0.6408 -8.2392 6.2931 28 1 -0.9936 -7.6003 7.5864 29 1 -1.7794 -9.0692 5.8242 30 1 0.5562 -9.0988 6.4759 31 1 -0.3633 0.0007 1.0276 32 1 -0.3633 0.8897 -0.5144 33 1 -0.3634 -0.8902 -0.5132 34 1 4.7961 -2.4007 0.0166 35 1 5.9471 0.1366 -1.2299 36 1 6.7284 -1.4625 -1.2226 37 1 5.2119 -1.2168 -2.1221 38 1 5.1868 -1.2097 2.1563 39 1 6.7133 -1.4590 1.2758 40 1 5.9325 0.1408 1.2685 41 1 1.9926 -2.7819 2.0080 42 1 1.4348 -5.0259 0.1401 43 1 3.5775 -5.2486 1.4531 44 1 2.3978 -6.5375 1.8033 45 1 3.0634 -3.1859 4.3729 46 1 3.0951 -3.0995 2.5859 47 1 0.8312 -2.6218 4.3606 48 1 0.8626 -2.5370 2.5725 49 1 -0.1422 -5.9004 1.7914 50 1 -0.5724 -4.2094 1.4342 51 1 -2.1672 -6.6489 4.4965 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021287049.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:10 Heat of formation + Delta-G solvation = 111.908911 kcal Electronic energy + Delta-G solvation = -33224.908721 eV Core-core repulsion = 29130.914676 eV Total energy + Delta-G solvation = -4093.994045 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.93587 -41.09787 -38.38532 -36.26082 -34.60471 -34.23387 -32.21423 -31.55716 -30.81055 -30.29529 -29.07682 -28.80408 -27.48262 -25.26937 -24.12866 -23.37224 -23.08874 -21.62127 -20.52748 -19.74495 -19.62239 -19.19542 -17.97365 -17.72725 -16.96299 -16.44738 -15.75041 -15.23635 -14.93495 -14.37278 -14.26026 -14.09236 -13.71323 -13.62465 -13.40385 -13.33721 -13.17623 -12.99019 -12.95036 -12.80209 -12.50253 -12.21980 -12.17743 -11.75161 -11.70541 -11.61040 -11.57671 -11.56078 -11.04483 -11.01187 -10.94345 -10.72371 -10.47455 -10.34308 -10.07997 -10.02970 -9.87839 -9.65722 -9.54858 -9.46155 -9.42014 -8.71596 -8.29090 -6.91294 -5.80976 -3.19202 1.24580 1.86241 2.56843 2.78069 3.34223 3.40506 3.42075 3.55434 4.02941 4.13349 4.40042 4.58370 4.68742 4.72640 5.00248 5.06371 5.10430 5.25785 5.28444 5.32767 5.36881 5.38756 5.48148 5.50206 5.54125 5.54936 5.57750 5.59856 5.71499 5.72126 5.79026 5.89914 5.92349 5.92742 5.94408 5.97656 6.11100 6.25332 6.45929 6.46775 6.49465 6.54597 6.71410 6.81616 6.92698 7.04237 7.41528 7.51125 7.69317 7.78797 8.15171 8.18369 8.41150 9.07217 9.68795 10.44892 11.28857 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017666 B = 0.003308 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.582746 B = 8461.489231 C = 9009.703129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.053 3.947 3 N -0.358 5.358 4 O 0.097 5.903 5 C 0.019 3.981 6 C -0.016 4.016 7 C -0.149 4.149 8 C -0.150 4.150 9 C -0.242 4.242 10 C 0.579 3.421 11 O -0.541 6.541 12 N -0.721 5.721 13 C 0.140 3.860 14 C -0.137 4.137 15 C 0.151 3.849 16 H 0.069 0.931 17 C -0.162 4.162 18 C -0.174 4.174 19 C 0.176 3.824 20 H 0.125 0.875 21 C -0.125 4.125 22 N -0.583 5.583 23 C -0.222 4.222 24 H 0.077 0.923 25 C -0.005 4.005 26 N -0.914 5.914 27 Si 0.912 3.088 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.430 0.570 42 H 0.084 0.916 43 H 0.048 0.952 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.075 0.925 47 H 0.060 0.940 48 H 0.075 0.925 49 H 0.082 0.918 50 H 0.045 0.955 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.483 11.911 -7.108 17.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 N -0.065 5.065 4 O 0.036 5.964 5 C -0.044 4.044 6 C -0.036 4.036 7 C -0.206 4.206 8 C -0.208 4.208 9 C -0.249 4.249 10 C 0.362 3.638 11 O -0.419 6.419 12 N -0.394 5.394 13 C 0.037 3.963 14 C -0.177 4.177 15 C 0.042 3.958 16 H 0.087 0.913 17 C -0.201 4.201 18 C -0.214 4.214 19 C 0.069 3.931 20 H 0.143 0.857 21 C -0.165 4.165 22 N -0.304 5.304 23 C -0.350 4.350 24 H 0.094 0.906 25 C -0.202 4.202 26 N -0.561 5.561 27 Si 0.742 3.258 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.290 0.710 42 H 0.102 0.898 43 H 0.067 0.933 44 H 0.094 0.906 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.078 0.922 48 H 0.093 0.907 49 H 0.101 0.899 50 H 0.063 0.937 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.993 12.640 -7.633 17.829 hybrid contribution -0.363 -1.248 0.832 1.543 sum 9.630 11.392 -6.801 16.394 Atomic orbital electron populations 1.20253 0.85131 1.04290 1.04051 1.24762 0.98615 0.86585 1.00904 1.73598 0.89164 1.23374 1.20371 1.84481 1.21418 1.22555 1.67981 1.24607 0.96872 0.83685 0.99280 1.19909 0.87006 0.98795 0.97862 1.21874 1.00007 1.02434 0.96279 1.21905 1.00258 1.02539 0.96051 1.22135 0.92617 0.95851 1.14279 1.17182 0.77454 0.83865 0.85274 1.90773 1.51321 1.67769 1.32054 1.49161 1.67972 1.12894 1.09325 1.21181 0.95948 0.78746 1.00431 1.22494 0.96740 1.00543 0.97938 1.21520 0.91093 0.91486 0.91673 0.91286 1.23274 0.96745 0.99439 1.00675 1.23486 0.95747 1.01490 1.00659 1.21774 0.95998 0.83878 0.91459 0.85746 1.22384 0.93239 1.02750 0.98088 1.45167 1.01325 1.32194 1.51690 1.19025 0.92391 1.07476 1.16117 0.90556 1.24808 0.95888 0.99568 0.99891 1.69748 0.99071 1.44815 1.42496 0.86106 0.77673 0.81157 0.80827 1.21719 1.21720 1.20661 0.89402 0.90019 0.89562 0.87849 0.91671 0.91002 0.91886 0.91780 0.90904 0.91604 0.70978 0.89769 0.93315 0.90635 0.92089 0.90682 0.92166 0.90713 0.89902 0.93652 0.93603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.49 36.01 0.38 -0.51 16 2 C 0.05 0.73 7.59 -79.77 -0.61 0.13 16 3 N -0.36 -4.98 12.01 34.78 0.42 -4.56 16 4 O 0.10 1.25 11.06 18.65 0.21 1.45 16 5 C 0.02 0.23 6.06 -34.63 -0.21 0.03 16 6 C -0.02 -0.15 3.33 -91.77 -0.31 -0.46 16 7 C -0.15 -1.19 9.17 37.16 0.34 -0.85 16 8 C -0.15 -1.16 9.18 37.16 0.34 -0.82 16 9 C -0.24 -3.45 6.24 -102.89 -0.64 -4.10 16 10 C 0.58 9.40 7.30 -12.53 -0.09 9.31 16 11 O -0.54 -10.55 16.43 5.27 0.09 -10.46 16 12 N -0.72 -11.29 2.77 -54.74 -0.15 -11.45 16 13 C 0.14 2.49 3.15 -67.78 -0.21 2.28 16 14 C -0.14 -2.38 5.49 -26.29 -0.14 -2.52 16 15 C 0.15 2.79 4.32 -65.74 -0.28 2.50 16 16 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 17 C -0.16 -2.56 5.75 -25.21 -0.14 -2.70 16 18 C -0.17 -3.01 5.77 -25.06 -0.14 -3.15 16 19 C 0.18 3.75 3.23 -65.59 -0.21 3.54 16 20 H 0.13 3.10 5.97 -51.93 -0.31 2.79 16 21 C -0.12 -2.50 5.49 -26.29 -0.14 -2.65 16 22 N -0.58 -13.27 2.83 -152.61 -0.43 -13.71 16 23 C -0.22 -5.69 10.40 -15.06 -0.16 -5.84 16 24 H 0.08 1.92 7.83 -52.48 -0.41 1.50 16 25 C 0.00 -0.13 5.47 -17.43 -0.10 -0.22 16 26 N -0.91 -24.64 10.53 55.49 0.58 -24.06 16 27 Si 0.91 20.97 29.56 -169.99 -5.02 15.95 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 29 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 30 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.10 1.07 7.70 -51.93 -0.40 0.67 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.43 6.36 1.88 -65.98 -0.12 6.24 16 42 H 0.08 1.58 6.89 -51.93 -0.36 1.22 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 45 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.08 1.05 5.27 -51.93 -0.27 0.78 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.08 1.19 5.26 -51.93 -0.27 0.91 16 49 H 0.08 1.91 8.14 -51.93 -0.42 1.49 16 50 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 51 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 394.34 15.07 5.94 5.94 Total: -1.00 -29.36 394.34 -8.75 -38.11 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -8.05 Total: 8.83 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -2.33 Total: -6.05 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.42 Total: -53.77 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.29 Total: -9.01 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.36 -8.75 -38.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021287049.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.019 kcal (2) G-P(sol) polarization free energy of solvation -29.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds