Wall clock time and date at job start Wed Apr 1 2020 04:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30005 * 127.33641 * 2 1 4 4 O 1.20660 * 112.29948 * 179.97438 * 3 2 1 5 5 C 1.33493 * 113.15906 * 359.71749 * 4 3 2 6 6 C 1.50699 * 126.83277 * 180.30816 * 5 4 3 7 7 C 1.52997 * 109.46985 * 300.17515 * 6 5 4 8 8 C 1.53010 * 109.46947 * 60.17067 * 6 5 4 9 9 C 1.37358 * 106.33746 * 0.45163 * 5 4 3 10 10 C 1.47395 * 128.56346 * 179.85238 * 9 5 4 11 11 O 1.21608 * 120.00256 * 269.70476 * 10 9 5 12 12 N 1.34778 * 120.00138 * 89.70586 * 10 9 5 13 13 C 1.46496 * 120.00171 * 180.02562 * 12 10 9 14 14 C 1.53154 * 109.43475 * 120.08627 * 13 12 10 15 15 C 1.53696 * 108.87549 * 66.17453 * 14 13 12 16 16 H 1.09006 * 112.58167 * 187.92588 * 15 14 13 17 17 C 1.54602 * 107.83366 * 312.22873 * 15 14 13 18 18 C 1.54307 * 104.85160 * 88.61348 * 17 15 14 19 19 C 1.54869 * 104.62880 * 0.08297 * 18 17 15 20 20 H 1.08997 * 112.70495 * 147.03216 * 19 18 17 21 21 C 1.53148 * 109.43351 * 240.30651 * 13 12 10 22 22 N 1.48296 * 104.30194 * 25.05999 * 19 18 17 23 23 C 1.36936 * 128.20857 * 138.39772 * 22 19 18 24 24 H 1.08003 * 120.00296 * 192.93683 * 23 22 19 25 25 C 1.38812 * 120.00080 * 12.94726 * 23 22 19 26 26 N 1.31624 * 120.00093 * 4.63150 * 25 23 22 27 27 Si 1.86802 * 119.99987 * 184.62542 * 25 23 22 28 28 H 1.48505 * 109.46760 * 94.98518 * 27 25 23 29 29 H 1.48504 * 109.47287 * 214.97903 * 27 25 23 30 30 H 1.48497 * 109.47415 * 334.98502 * 27 25 23 31 31 H 1.08997 * 109.47084 * 270.03973 * 1 2 3 32 32 H 1.09002 * 109.46997 * 30.03495 * 1 2 3 33 33 H 1.08994 * 109.47526 * 150.03710 * 1 2 3 34 34 H 1.08997 * 109.47250 * 180.17089 * 6 5 4 35 35 H 1.08997 * 109.47160 * 60.00158 * 7 6 5 36 36 H 1.09010 * 109.46860 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.47219 * 299.99338 * 7 6 5 38 38 H 1.09000 * 109.46663 * 59.99769 * 8 6 5 39 39 H 1.08995 * 109.46853 * 179.97438 * 8 6 5 40 40 H 1.09003 * 109.47115 * 300.00546 * 8 6 5 41 41 H 0.96999 * 119.99834 * 359.97438 * 12 10 9 42 42 H 1.09004 * 109.40200 * 0.19677 * 13 12 10 43 43 H 1.08994 * 109.57261 * 306.35278 * 14 13 12 44 44 H 1.08998 * 109.56442 * 185.99190 * 14 13 12 45 45 H 1.09001 * 110.38366 * 207.49030 * 17 15 14 46 46 H 1.08998 * 110.38057 * 329.73699 * 17 15 14 47 47 H 1.09002 * 110.38419 * 118.87360 * 18 17 15 48 48 H 1.08999 * 110.38376 * 241.23497 * 18 17 15 49 49 H 1.09001 * 109.56645 * 174.00558 * 21 13 12 50 50 H 1.08999 * 109.66974 * 53.70191 * 21 13 12 51 51 H 0.96993 * 120.00165 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7206 0.0005 5 6 3.6494 -0.6009 0.0070 6 6 4.9711 -1.3248 0.0159 7 6 5.7721 -0.9392 -1.2293 8 6 5.7576 -0.9351 1.2692 9 6 2.3991 -1.1697 0.0006 10 6 2.0400 -2.5992 0.0008 11 8 1.8927 -3.1893 -1.0523 12 7 1.8748 -3.2524 1.1680 13 6 1.5184 -4.6734 1.1682 14 6 2.6058 -5.4714 1.8937 15 6 2.6095 -5.0716 3.3777 16 1 3.4495 -5.4999 3.9246 17 6 2.5906 -3.5275 3.4521 18 6 1.0946 -3.1494 3.4438 19 6 0.3490 -4.5046 3.3671 20 1 -0.6023 -4.4921 3.8990 21 6 0.1768 -4.8621 1.8823 22 7 1.3028 -5.4807 3.9473 23 6 1.0395 -6.5145 4.8059 24 1 1.8511 -7.0166 5.3116 25 6 -0.2705 -6.9172 5.0262 26 7 -1.2518 -6.3678 4.3424 27 14 -0.6408 -8.2392 6.2931 28 1 -0.9936 -7.6003 7.5864 29 1 -1.7794 -9.0692 5.8242 30 1 0.5562 -9.0988 6.4759 31 1 -0.3633 0.0007 1.0276 32 1 -0.3633 0.8897 -0.5144 33 1 -0.3634 -0.8902 -0.5132 34 1 4.7961 -2.4007 0.0166 35 1 5.9471 0.1366 -1.2299 36 1 6.7284 -1.4625 -1.2226 37 1 5.2119 -1.2168 -2.1221 38 1 5.1868 -1.2097 2.1563 39 1 6.7133 -1.4590 1.2758 40 1 5.9325 0.1408 1.2685 41 1 1.9926 -2.7819 2.0080 42 1 1.4348 -5.0259 0.1401 43 1 3.5775 -5.2486 1.4531 44 1 2.3978 -6.5375 1.8033 45 1 3.0634 -3.1859 4.3729 46 1 3.0951 -3.0995 2.5859 47 1 0.8312 -2.6218 4.3606 48 1 0.8626 -2.5370 2.5725 49 1 -0.1422 -5.9004 1.7914 50 1 -0.5724 -4.2094 1.4342 51 1 -2.1672 -6.6489 4.4965 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021287049.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:09 Heat of formation + Delta-G solvation = 97.573727 kcal Electronic energy + Delta-G solvation = -33225.530342 eV Core-core repulsion = 29130.914676 eV Total energy + Delta-G solvation = -4094.615666 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.95900 -42.56152 -39.79402 -37.02814 -35.87912 -35.61870 -33.93554 -32.90570 -32.02250 -31.77103 -30.72248 -29.77915 -28.06308 -26.80391 -25.57798 -24.86813 -23.89320 -23.10457 -21.85246 -21.22939 -21.00222 -20.35269 -19.29949 -18.83192 -18.48336 -17.56867 -16.84341 -16.66897 -16.43576 -15.99673 -15.43921 -15.32139 -14.90386 -14.70332 -14.56863 -14.46134 -14.38030 -14.29227 -14.09840 -13.84656 -13.77942 -13.71421 -13.31753 -13.19018 -13.03029 -12.80815 -12.66376 -12.54694 -12.41387 -12.32355 -12.22109 -12.03828 -11.97204 -11.82275 -11.73867 -11.52983 -11.17280 -11.13605 -11.03564 -10.94857 -10.58056 -10.46157 -9.73652 -8.75213 -7.77401 -5.15229 0.25780 0.81879 1.30572 1.49577 1.50919 1.58566 1.76346 2.32427 2.52825 3.07805 3.15255 3.38040 3.54690 3.70443 3.77489 3.91484 3.93683 4.03821 4.07260 4.14116 4.16770 4.26025 4.28734 4.40067 4.43189 4.48589 4.55500 4.59770 4.67215 4.69026 4.78475 4.80690 4.90837 4.94626 4.95167 5.00399 5.01645 5.07102 5.09032 5.10367 5.24841 5.28237 5.31186 5.37146 5.41747 5.55233 5.58196 5.77251 5.86438 6.33052 6.46271 7.09991 7.13560 7.15362 7.79795 8.57694 9.30453 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017666 B = 0.003308 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.582746 B = 8461.489231 C = 9009.703129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.049 3.951 3 N -0.371 5.371 4 O 0.100 5.900 5 C 0.040 3.960 6 C -0.020 4.020 7 C -0.147 4.147 8 C -0.148 4.148 9 C -0.272 4.272 10 C 0.589 3.411 11 O -0.575 6.575 12 N -0.710 5.710 13 C 0.152 3.848 14 C -0.129 4.129 15 C 0.144 3.856 16 H 0.077 0.923 17 C -0.149 4.149 18 C -0.165 4.165 19 C 0.170 3.830 20 H 0.085 0.915 21 C -0.114 4.114 22 N -0.604 5.604 23 C -0.226 4.226 24 H 0.079 0.921 25 C -0.058 4.058 26 N -0.937 5.937 27 Si 0.968 3.032 28 H -0.292 1.292 29 H -0.301 1.301 30 H -0.272 1.272 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.435 0.565 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.055 0.945 45 H 0.077 0.923 46 H 0.101 0.899 47 H 0.062 0.938 48 H 0.091 0.909 49 H 0.044 0.956 50 H 0.046 0.954 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.120 13.455 -6.977 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 N -0.079 5.079 4 O 0.040 5.960 5 C -0.024 4.024 6 C -0.039 4.039 7 C -0.204 4.204 8 C -0.205 4.205 9 C -0.279 4.279 10 C 0.375 3.625 11 O -0.455 6.455 12 N -0.382 5.382 13 C 0.048 3.952 14 C -0.169 4.169 15 C 0.037 3.963 16 H 0.095 0.905 17 C -0.189 4.189 18 C -0.204 4.204 19 C 0.063 3.937 20 H 0.103 0.897 21 C -0.155 4.155 22 N -0.325 5.325 23 C -0.355 4.355 24 H 0.097 0.903 25 C -0.251 4.251 26 N -0.586 5.586 27 Si 0.798 3.202 28 H -0.219 1.219 29 H -0.228 1.228 30 H -0.196 1.196 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.111 0.889 40 H 0.090 0.910 41 H 0.297 0.703 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.074 0.926 45 H 0.096 0.904 46 H 0.118 0.882 47 H 0.081 0.919 48 H 0.109 0.891 49 H 0.063 0.937 50 H 0.065 0.935 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.674 14.214 -7.494 20.465 hybrid contribution -1.145 -1.712 0.748 2.191 sum 11.530 12.502 -6.746 18.296 Atomic orbital electron populations 1.20361 0.83881 1.04703 1.04981 1.25107 0.99577 0.86255 1.00331 1.73594 0.89487 1.23566 1.21222 1.84474 1.21097 1.22696 1.67757 1.25126 0.97387 0.83354 0.96508 1.20130 0.86044 0.98068 0.99665 1.21888 1.00509 1.03233 0.94763 1.21927 1.00750 1.03243 0.94579 1.21946 0.93861 0.94778 1.17348 1.17303 0.76282 0.84447 0.84494 1.90760 1.52730 1.68805 1.33224 1.48980 1.67765 1.11862 1.09625 1.20875 0.94780 0.80103 0.99446 1.22397 0.97882 0.99224 0.97425 1.21766 0.89385 0.93333 0.91827 0.90454 1.23183 0.95748 0.97177 1.02746 1.23365 0.96316 0.99129 1.01633 1.21626 0.94887 0.86030 0.91136 0.89731 1.22188 0.94827 1.00339 0.98122 1.45353 1.03383 1.31991 1.51770 1.19324 0.92400 1.07745 1.16055 0.90349 1.25462 0.96085 1.01714 1.01881 1.69962 0.98741 1.46001 1.43893 0.85212 0.77191 0.79107 0.78685 1.21919 1.22771 1.19643 0.88162 0.88490 0.90273 0.88403 0.90937 0.88815 0.93331 0.92100 0.88895 0.91012 0.70303 0.90701 0.90293 0.92639 0.90397 0.88183 0.91888 0.89113 0.93731 0.93548 0.94591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.72 10.49 71.24 0.75 -0.97 16 2 C 0.05 1.27 7.59 45.16 0.34 1.61 16 3 N -0.37 -9.60 12.01 -44.80 -0.54 -10.14 16 4 O 0.10 2.33 11.06 76.98 0.85 3.18 16 5 C 0.04 0.89 6.06 25.48 0.15 1.05 16 6 C -0.02 -0.31 3.33 -11.54 -0.04 -0.35 16 7 C -0.15 -1.93 9.17 71.98 0.66 -1.27 16 8 C -0.15 -1.71 9.18 71.99 0.66 -1.05 16 9 C -0.27 -7.29 6.24 -18.75 -0.12 -7.40 16 10 C 0.59 18.30 7.30 86.65 0.63 18.93 16 11 O -0.57 -22.04 16.43 -4.06 -0.07 -22.10 16 12 N -0.71 -20.98 2.77 -445.35 -1.23 -22.22 16 13 C 0.15 5.32 3.15 45.09 0.14 5.46 16 14 C -0.13 -4.31 5.49 30.88 0.17 -4.14 16 15 C 0.14 5.07 4.32 45.43 0.20 5.26 16 16 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 17 C -0.15 -4.27 5.75 31.58 0.18 -4.09 16 18 C -0.16 -5.43 5.77 31.68 0.18 -5.25 16 19 C 0.17 7.36 3.23 45.52 0.15 7.50 16 20 H 0.08 4.39 5.97 -2.39 -0.01 4.37 16 21 C -0.11 -4.73 5.49 30.88 0.17 -4.56 16 22 N -0.60 -27.52 2.83 -636.74 -1.80 -29.32 16 23 C -0.23 -11.68 10.40 84.03 0.87 -10.81 16 24 H 0.08 3.92 7.83 -2.91 -0.02 3.89 16 25 C -0.06 -3.08 5.47 84.86 0.46 -2.61 16 26 N -0.94 -52.56 10.53 21.65 0.23 -52.33 16 27 Si 0.97 43.96 29.56 68.60 2.03 45.99 16 28 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 29 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 30 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 31 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 34 H 0.10 1.72 7.70 -2.39 -0.02 1.70 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.43 11.76 1.88 -116.34 -0.22 11.54 16 42 H 0.07 2.81 6.89 -2.39 -0.02 2.80 16 43 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.10 2.41 5.27 -2.39 -0.01 2.39 16 47 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 48 H 0.09 2.70 5.26 -2.39 -0.01 2.69 16 49 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 50 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.24 13.60 8.31 -92.71 -0.77 12.83 16 Total: -1.00 -65.30 394.34 5.76 -59.54 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 0.72 Total: 30.09 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 5.57 Total: -2.69 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -3.34 Total: -114.01 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.78 Total: -18.92 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -65.30 5.76 -59.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021287049.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.116 kcal (2) G-P(sol) polarization free energy of solvation -65.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds