Wall clock time and date at job start Wed Apr 1 2020 04:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30180 * 126.80090 * 2 1 4 4 O 1.20925 * 111.60096 * 180.25583 * 3 2 1 5 5 C 1.34043 * 111.56914 * 359.74518 * 4 3 2 6 6 C 1.50700 * 126.77569 * 180.02562 * 5 4 3 7 7 C 1.35444 * 106.44722 * 359.97438 * 5 4 3 8 8 C 1.50698 * 128.01118 * 179.97438 * 7 5 4 9 9 C 1.50709 * 109.46942 * 90.00170 * 8 7 5 10 10 O 1.21284 * 119.99507 * 0.02562 * 9 8 7 11 11 N 1.34766 * 119.99842 * 180.02562 * 9 8 7 12 12 C 1.46951 * 120.85009 * 0.02562 * 11 9 8 13 13 C 1.53198 * 109.03741 * 234.00314 * 12 11 9 14 14 C 1.53115 * 109.44693 * 305.93519 * 13 12 11 15 15 C 1.52852 * 109.36727 * 60.63969 * 14 13 12 16 16 H 1.09003 * 109.25062 * 57.50307 * 15 14 13 17 17 C 1.52776 * 110.20338 * 177.54750 * 15 14 13 18 18 N 1.46889 * 109.19174 * 67.35649 * 17 15 14 19 19 C 1.36939 * 120.77201 * 233.36308 * 18 17 15 20 20 H 1.07995 * 119.99702 * 151.95240 * 19 18 17 21 21 C 1.38807 * 120.00312 * 331.95557 * 19 18 17 22 22 N 1.31628 * 119.99794 * 343.12785 * 21 19 18 23 23 Si 1.86798 * 120.00185 * 163.13550 * 21 19 18 24 24 H 1.48497 * 109.47297 * 89.99564 * 23 21 19 25 25 H 1.48498 * 109.46962 * 209.99901 * 23 21 19 26 26 H 1.48504 * 109.46974 * 329.99651 * 23 21 19 27 27 C 1.46976 * 118.44957 * 53.34916 * 18 17 15 28 28 C 1.53093 * 108.61760 * 305.67475 * 27 18 17 29 29 C 1.47315 * 120.84443 * 180.02562 * 11 9 8 30 30 H 1.08992 * 110.67449 * 4.58003 * 29 11 9 31 31 H 1.08998 * 109.46991 * 270.16508 * 1 2 3 32 32 H 1.08997 * 109.47308 * 30.16261 * 1 2 3 33 33 H 1.09000 * 109.46883 * 150.16864 * 1 2 3 34 34 H 1.08996 * 109.47038 * 270.00107 * 6 5 4 35 35 H 1.09001 * 109.47151 * 30.00104 * 6 5 4 36 36 H 1.08999 * 109.47231 * 149.99618 * 6 5 4 37 37 H 1.09005 * 109.46642 * 330.00858 * 8 7 5 38 38 H 1.08992 * 109.47691 * 210.00586 * 8 7 5 39 39 H 1.08999 * 109.53818 * 353.86809 * 12 11 9 40 40 H 1.08995 * 109.54745 * 114.04555 * 12 11 9 41 41 H 1.08992 * 109.50223 * 185.92864 * 13 12 11 42 42 H 1.09004 * 109.46042 * 65.91701 * 13 12 11 43 43 H 1.09000 * 109.49366 * 300.66635 * 14 13 12 44 44 H 1.09001 * 109.49279 * 180.61454 * 14 13 12 45 45 H 1.09005 * 109.51291 * 187.27211 * 17 15 14 46 46 H 1.09000 * 109.52144 * 307.43834 * 17 15 14 47 47 H 0.97002 * 119.99493 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.61639 * 65.41908 * 27 18 17 49 49 H 1.09007 * 109.60928 * 185.94645 * 27 18 17 50 50 H 1.09001 * 109.45252 * 175.38123 * 28 27 18 51 51 H 1.09001 * 109.45433 * 295.34259 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7253 -0.0050 5 6 3.6024 -0.6068 -0.0036 6 6 4.9022 -1.3695 -0.0080 7 6 2.3540 -1.1320 0.0038 8 6 1.9590 -2.5863 0.0077 9 6 1.8350 -3.0693 1.4299 10 8 2.0460 -2.3073 2.3496 11 7 1.4895 -4.3478 1.6796 12 6 1.2302 -5.2869 0.5795 13 6 -0.1533 -5.9154 0.7747 14 6 -0.2390 -6.5354 2.1721 15 6 -0.0344 -5.4453 3.2238 16 1 -0.7827 -4.6652 3.0831 17 6 -0.1767 -6.0325 4.6270 18 7 0.9385 -6.9546 4.8798 19 6 0.7054 -8.2398 5.2911 20 1 1.4126 -9.0200 5.0516 21 6 -0.4400 -8.5398 6.0156 22 7 -1.1259 -7.5752 6.5914 23 14 -1.0077 -10.3124 6.1736 24 1 -0.3869 -10.9258 7.3751 25 1 -2.4862 -10.3485 6.3073 26 1 -0.6013 -11.0720 4.9640 27 6 2.3102 -6.4657 4.6809 28 6 2.4265 -5.8996 3.2632 29 6 1.3623 -4.8395 3.0625 30 1 1.5015 -4.0261 3.7745 31 1 -0.3633 0.0030 1.0277 32 1 -0.3634 0.8885 -0.5163 33 1 -0.3633 -0.8915 -0.5112 34 1 5.2111 -1.5550 -1.0366 35 1 5.6682 -0.7851 0.5017 36 1 4.7673 -2.3202 0.5080 37 1 2.7201 -3.1708 -0.5094 38 1 1.0023 -2.7045 -0.5009 39 1 1.2572 -4.7524 -0.3700 40 1 1.9903 -6.0681 0.5800 41 1 -0.3106 -6.6893 0.0235 42 1 -0.9192 -5.1469 0.6706 43 1 0.5348 -7.2954 2.2809 44 1 -1.2192 -6.9924 2.3078 45 1 -0.1578 -5.2279 5.3621 46 1 -1.1203 -6.5730 4.7017 47 1 -1.9265 -7.7849 7.0974 48 1 2.5283 -5.6823 5.4067 49 1 3.0136 -7.2891 4.8048 50 1 3.4142 -5.4589 3.1282 51 1 2.2849 -6.7021 2.5391 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021733484.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:27 Heat of formation + Delta-G solvation = 40.256491 kcal Electronic energy + Delta-G solvation = -32346.337466 eV Core-core repulsion = 28249.236338 eV Total energy + Delta-G solvation = -4097.101128 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.98897 -40.45070 -38.24070 -35.59425 -35.35764 -33.78224 -32.69980 -32.63475 -30.58130 -30.03107 -29.24175 -28.75065 -27.30720 -25.61886 -24.82041 -22.78520 -22.16508 -21.86721 -21.26850 -20.33100 -19.07638 -17.89237 -17.80109 -17.13634 -16.99941 -16.58588 -15.59789 -15.46047 -15.10654 -14.49525 -14.43197 -14.09123 -13.94668 -13.62580 -13.59403 -13.49868 -13.28497 -13.17828 -13.06261 -12.85153 -12.69543 -12.64058 -12.44115 -12.28950 -12.24949 -12.05031 -11.57843 -11.15201 -11.06863 -10.98309 -10.76005 -10.65640 -10.49474 -10.14836 -10.10004 -10.02520 -10.01087 -9.74188 -9.63134 -9.46460 -9.13140 -8.52928 -8.28677 -6.69578 -5.81744 -3.24091 1.36028 2.07537 2.71697 2.97977 3.19093 3.34688 3.42163 3.43313 4.05173 4.30878 4.46554 4.54141 4.59350 4.70113 4.90649 5.03640 5.09705 5.13062 5.14539 5.18337 5.25532 5.35235 5.36572 5.43039 5.44369 5.47689 5.52348 5.55649 5.59161 5.65312 5.73355 5.78847 5.85518 6.02321 6.03636 6.06537 6.19181 6.28668 6.39632 6.44944 6.51268 6.65658 6.75124 6.88587 6.93139 7.00393 7.28880 7.56384 7.64863 7.76637 8.20401 8.30821 8.41647 9.17953 9.81240 10.38806 11.26886 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022127 B = 0.002645 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.097532 B =10584.016037 C =10768.256482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.034 3.966 3 N -0.370 5.370 4 O 0.095 5.905 5 C -0.019 4.019 6 C -0.074 4.074 7 C -0.181 4.181 8 C -0.062 4.062 9 C 0.512 3.488 10 O -0.537 6.537 11 N -0.606 5.606 12 C 0.107 3.893 13 C -0.135 4.135 14 C -0.104 4.104 15 C -0.114 4.114 16 H 0.056 0.944 17 C 0.177 3.823 18 N -0.588 5.588 19 C -0.250 4.250 20 H 0.065 0.935 21 C 0.004 3.996 22 N -0.902 5.902 23 Si 0.900 3.100 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.146 3.854 28 C -0.141 4.141 29 C 0.157 3.843 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.019 0.981 46 H 0.091 0.909 47 H 0.254 0.746 48 H 0.019 0.981 49 H 0.056 0.944 50 H 0.050 0.950 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.435 8.473 -18.553 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.125 4.125 3 N -0.076 5.076 4 O 0.031 5.969 5 C -0.082 4.082 6 C -0.131 4.131 7 C -0.185 4.185 8 C -0.102 4.102 9 C 0.299 3.701 10 O -0.414 6.414 11 N -0.339 5.339 12 C -0.016 4.016 13 C -0.173 4.173 14 C -0.141 4.141 15 C -0.135 4.135 16 H 0.075 0.925 17 C 0.051 3.949 18 N -0.311 5.311 19 C -0.380 4.380 20 H 0.083 0.917 21 C -0.195 4.195 22 N -0.546 5.546 23 Si 0.729 3.271 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.019 3.981 28 C -0.181 4.181 29 C 0.055 3.945 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.037 0.963 46 H 0.109 0.891 47 H 0.064 0.936 48 H 0.037 0.963 49 H 0.074 0.926 50 H 0.069 0.931 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.193 10.180 -17.943 21.539 hybrid contribution -0.550 -1.712 0.143 1.804 sum 5.643 8.468 -17.800 20.503 Atomic orbital electron populations 1.20162 0.86127 1.03348 1.03708 1.23343 0.98801 0.88398 1.01946 1.73802 0.89233 1.23857 1.20755 1.84772 1.21686 1.22377 1.68057 1.24147 0.98053 0.83844 1.02198 1.20333 0.90203 0.98853 1.03707 1.20245 0.91878 0.96026 1.10399 1.19945 1.04049 0.90302 0.95913 1.20374 0.77250 0.81735 0.90746 1.90716 1.50020 1.54267 1.46349 1.48614 1.67638 1.09435 1.08232 1.21723 0.97856 0.93001 0.89041 1.21976 0.96072 1.00087 0.99195 1.21430 1.02777 0.98187 0.91740 1.22009 0.94642 0.97095 0.99799 0.92518 1.20699 0.93774 0.92228 0.88220 1.44024 0.98950 1.10473 1.77624 1.19116 1.06690 0.84211 1.27971 0.91742 1.25035 1.00320 0.97143 0.97013 1.70031 1.18919 1.30809 1.34828 0.86345 0.77822 0.84942 0.77945 1.21436 1.21612 1.20504 1.20877 0.88640 0.96693 0.91907 1.22129 0.96900 0.98109 1.00967 1.21084 0.95986 0.96331 0.81067 0.88869 0.89907 0.90590 0.90277 0.89453 0.89671 0.89190 0.87869 0.87789 0.90638 0.91164 0.91262 0.92154 0.90479 0.92075 0.96301 0.89053 0.93617 0.96288 0.92550 0.93108 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.39 36.00 0.37 -0.39 16 2 C 0.03 0.44 7.33 -82.10 -0.60 -0.16 16 3 N -0.37 -5.30 12.07 33.42 0.40 -4.90 16 4 O 0.09 1.25 11.20 17.17 0.19 1.44 16 5 C -0.02 -0.21 7.49 -35.31 -0.26 -0.48 16 6 C -0.07 -0.54 10.25 36.01 0.37 -0.17 16 7 C -0.18 -2.16 4.81 -104.42 -0.50 -2.66 16 8 C -0.06 -0.61 4.31 -29.03 -0.12 -0.73 16 9 C 0.51 7.16 7.70 -10.99 -0.08 7.07 16 10 O -0.54 -9.91 15.51 5.55 0.09 -9.83 16 11 N -0.61 -8.24 2.62 -165.80 -0.43 -8.67 16 12 C 0.11 1.11 5.84 -3.69 -0.02 1.09 16 13 C -0.14 -1.56 6.08 -26.57 -0.16 -1.72 16 14 C -0.10 -1.65 4.86 -26.75 -0.13 -1.78 16 15 C -0.11 -2.06 2.50 -90.76 -0.23 -2.29 16 16 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 17 C 0.18 4.05 4.68 -3.94 -0.02 4.03 16 18 N -0.59 -13.93 2.63 -172.62 -0.45 -14.38 16 19 C -0.25 -6.53 9.60 -15.06 -0.14 -6.68 16 20 H 0.06 1.66 7.88 -52.49 -0.41 1.24 16 21 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 22 N -0.90 -25.49 11.20 55.49 0.62 -24.87 16 23 Si 0.90 21.01 29.59 -169.99 -5.03 15.98 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 C 0.15 2.96 6.50 -3.73 -0.02 2.93 16 28 C -0.14 -2.35 4.93 -27.42 -0.14 -2.49 16 29 C 0.16 2.66 2.55 -68.17 -0.17 2.48 16 30 H 0.09 1.84 7.10 -51.93 -0.37 1.47 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.63 7.65 -51.93 -0.40 0.23 16 34 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.67 8.05 -51.93 -0.42 0.26 16 37 H 0.10 0.73 7.88 -51.93 -0.41 0.32 16 38 H 0.10 0.82 7.22 -51.93 -0.37 0.44 16 39 H 0.08 0.55 5.96 -51.93 -0.31 0.24 16 40 H 0.07 0.71 7.18 -51.93 -0.37 0.34 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.08 1.35 6.17 -51.93 -0.32 1.03 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.09 2.33 6.06 -51.93 -0.31 2.02 16 47 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.06 1.11 7.94 -51.93 -0.41 0.70 16 50 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 51 H 0.07 1.07 5.26 -51.93 -0.27 0.80 16 LS Contribution 393.10 15.07 5.92 5.92 Total: -1.00 -32.50 393.10 -8.82 -41.32 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -8.17 Total: -0.09 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -1.96 Total: -1.93 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.14 Total: -52.82 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.28 Total: -8.38 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.50 -8.82 -41.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021733484.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.579 kcal (2) G-P(sol) polarization free energy of solvation -32.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds