Wall clock time and date at job start Wed Apr 1 2020 04:41:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50696 * 1
3 3 N 1.30180 * 126.80090 * 2 1
4 4 O 1.20925 * 111.60096 * 180.25583 * 3 2 1
5 5 C 1.34043 * 111.56914 * 359.74518 * 4 3 2
6 6 C 1.50700 * 126.77569 * 180.02562 * 5 4 3
7 7 C 1.35444 * 106.44722 * 359.97438 * 5 4 3
8 8 C 1.50698 * 128.01118 * 179.97438 * 7 5 4
9 9 C 1.50709 * 109.46942 * 90.00170 * 8 7 5
10 10 O 1.21284 * 119.99507 * 0.02562 * 9 8 7
11 11 N 1.34766 * 119.99842 * 180.02562 * 9 8 7
12 12 C 1.46951 * 120.85009 * 0.02562 * 11 9 8
13 13 C 1.53198 * 109.03741 * 234.00314 * 12 11 9
14 14 C 1.53115 * 109.44693 * 305.93519 * 13 12 11
15 15 C 1.52852 * 109.36727 * 60.63969 * 14 13 12
16 16 H 1.09003 * 109.25062 * 57.50307 * 15 14 13
17 17 C 1.52776 * 110.20338 * 177.54750 * 15 14 13
18 18 N 1.46889 * 109.19174 * 67.35649 * 17 15 14
19 19 C 1.36939 * 120.77201 * 233.36308 * 18 17 15
20 20 H 1.07995 * 119.99702 * 151.95240 * 19 18 17
21 21 C 1.38807 * 120.00312 * 331.95557 * 19 18 17
22 22 N 1.31628 * 119.99794 * 343.12785 * 21 19 18
23 23 Si 1.86798 * 120.00185 * 163.13550 * 21 19 18
24 24 H 1.48497 * 109.47297 * 89.99564 * 23 21 19
25 25 H 1.48498 * 109.46962 * 209.99901 * 23 21 19
26 26 H 1.48504 * 109.46974 * 329.99651 * 23 21 19
27 27 C 1.46976 * 118.44957 * 53.34916 * 18 17 15
28 28 C 1.53093 * 108.61760 * 305.67475 * 27 18 17
29 29 C 1.47315 * 120.84443 * 180.02562 * 11 9 8
30 30 H 1.08992 * 110.67449 * 4.58003 * 29 11 9
31 31 H 1.08998 * 109.46991 * 270.16508 * 1 2 3
32 32 H 1.08997 * 109.47308 * 30.16261 * 1 2 3
33 33 H 1.09000 * 109.46883 * 150.16864 * 1 2 3
34 34 H 1.08996 * 109.47038 * 270.00107 * 6 5 4
35 35 H 1.09001 * 109.47151 * 30.00104 * 6 5 4
36 36 H 1.08999 * 109.47231 * 149.99618 * 6 5 4
37 37 H 1.09005 * 109.46642 * 330.00858 * 8 7 5
38 38 H 1.08992 * 109.47691 * 210.00586 * 8 7 5
39 39 H 1.08999 * 109.53818 * 353.86809 * 12 11 9
40 40 H 1.08995 * 109.54745 * 114.04555 * 12 11 9
41 41 H 1.08992 * 109.50223 * 185.92864 * 13 12 11
42 42 H 1.09004 * 109.46042 * 65.91701 * 13 12 11
43 43 H 1.09000 * 109.49366 * 300.66635 * 14 13 12
44 44 H 1.09001 * 109.49279 * 180.61454 * 14 13 12
45 45 H 1.09005 * 109.51291 * 187.27211 * 17 15 14
46 46 H 1.09000 * 109.52144 * 307.43834 * 17 15 14
47 47 H 0.97002 * 119.99493 * 179.97438 * 22 21 19
48 48 H 1.08996 * 109.61639 * 65.41908 * 27 18 17
49 49 H 1.09007 * 109.60928 * 185.94645 * 27 18 17
50 50 H 1.09001 * 109.45252 * 175.38123 * 28 27 18
51 51 H 1.09001 * 109.45433 * 295.34259 * 28 27 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2868 1.0424 0.0000
4 8 3.4537 0.7253 -0.0050
5 6 3.6024 -0.6068 -0.0036
6 6 4.9022 -1.3695 -0.0080
7 6 2.3540 -1.1320 0.0038
8 6 1.9590 -2.5863 0.0077
9 6 1.8350 -3.0693 1.4299
10 8 2.0460 -2.3073 2.3496
11 7 1.4895 -4.3478 1.6796
12 6 1.2302 -5.2869 0.5795
13 6 -0.1533 -5.9154 0.7747
14 6 -0.2390 -6.5354 2.1721
15 6 -0.0344 -5.4453 3.2238
16 1 -0.7827 -4.6652 3.0831
17 6 -0.1767 -6.0325 4.6270
18 7 0.9385 -6.9546 4.8798
19 6 0.7054 -8.2398 5.2911
20 1 1.4126 -9.0200 5.0516
21 6 -0.4400 -8.5398 6.0156
22 7 -1.1259 -7.5752 6.5914
23 14 -1.0077 -10.3124 6.1736
24 1 -0.3869 -10.9258 7.3751
25 1 -2.4862 -10.3485 6.3073
26 1 -0.6013 -11.0720 4.9640
27 6 2.3102 -6.4657 4.6809
28 6 2.4265 -5.8996 3.2632
29 6 1.3623 -4.8395 3.0625
30 1 1.5015 -4.0261 3.7745
31 1 -0.3633 0.0030 1.0277
32 1 -0.3634 0.8885 -0.5163
33 1 -0.3633 -0.8915 -0.5112
34 1 5.2111 -1.5550 -1.0366
35 1 5.6682 -0.7851 0.5017
36 1 4.7673 -2.3202 0.5080
37 1 2.7201 -3.1708 -0.5094
38 1 1.0023 -2.7045 -0.5009
39 1 1.2572 -4.7524 -0.3700
40 1 1.9903 -6.0681 0.5800
41 1 -0.3106 -6.6893 0.0235
42 1 -0.9192 -5.1469 0.6706
43 1 0.5348 -7.2954 2.2809
44 1 -1.2192 -6.9924 2.3078
45 1 -0.1578 -5.2279 5.3621
46 1 -1.1203 -6.5730 4.7017
47 1 -1.9265 -7.7849 7.0974
48 1 2.5283 -5.6823 5.4067
49 1 3.0136 -7.2891 4.8048
50 1 3.4142 -5.4589 3.1282
51 1 2.2849 -6.7021 2.5391
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001021733484.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:41:27
Heat of formation + Delta-G solvation = 40.256491 kcal
Electronic energy + Delta-G solvation = -32346.337466 eV
Core-core repulsion = 28249.236338 eV
Total energy + Delta-G solvation = -4097.101128 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-44.98897 -40.45070 -38.24070 -35.59425 -35.35764 -33.78224 -32.69980 -32.63475
-30.58130 -30.03107 -29.24175 -28.75065 -27.30720 -25.61886 -24.82041 -22.78520
-22.16508 -21.86721 -21.26850 -20.33100 -19.07638 -17.89237 -17.80109 -17.13634
-16.99941 -16.58588 -15.59789 -15.46047 -15.10654 -14.49525 -14.43197 -14.09123
-13.94668 -13.62580 -13.59403 -13.49868 -13.28497 -13.17828 -13.06261 -12.85153
-12.69543 -12.64058 -12.44115 -12.28950 -12.24949 -12.05031 -11.57843 -11.15201
-11.06863 -10.98309 -10.76005 -10.65640 -10.49474 -10.14836 -10.10004 -10.02520
-10.01087 -9.74188 -9.63134 -9.46460 -9.13140 -8.52928 -8.28677 -6.69578
-5.81744 -3.24091 1.36028 2.07537 2.71697 2.97977 3.19093 3.34688
3.42163 3.43313 4.05173 4.30878 4.46554 4.54141 4.59350 4.70113
4.90649 5.03640 5.09705 5.13062 5.14539 5.18337 5.25532 5.35235
5.36572 5.43039 5.44369 5.47689 5.52348 5.55649 5.59161 5.65312
5.73355 5.78847 5.85518 6.02321 6.03636 6.06537 6.19181 6.28668
6.39632 6.44944 6.51268 6.65658 6.75124 6.88587 6.93139 7.00393
7.28880 7.56384 7.64863 7.76637 8.20401 8.30821 8.41647 9.17953
9.81240 10.38806 11.26886
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.022127 B = 0.002645 C = 0.002600
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1265.097532 B =10584.016037 C =10768.256482
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C 0.034 3.966
3 N -0.370 5.370
4 O 0.095 5.905
5 C -0.019 4.019
6 C -0.074 4.074
7 C -0.181 4.181
8 C -0.062 4.062
9 C 0.512 3.488
10 O -0.537 6.537
11 N -0.606 5.606
12 C 0.107 3.893
13 C -0.135 4.135
14 C -0.104 4.104
15 C -0.114 4.114
16 H 0.056 0.944
17 C 0.177 3.823
18 N -0.588 5.588
19 C -0.250 4.250
20 H 0.065 0.935
21 C 0.004 3.996
22 N -0.902 5.902
23 Si 0.900 3.100
24 H -0.287 1.287
25 H -0.290 1.290
26 H -0.280 1.280
27 C 0.146 3.854
28 C -0.141 4.141
29 C 0.157 3.843
30 H 0.093 0.907
31 H 0.082 0.918
32 H 0.075 0.925
33 H 0.078 0.922
34 H 0.087 0.913
35 H 0.084 0.916
36 H 0.089 0.911
37 H 0.103 0.897
38 H 0.104 0.896
39 H 0.075 0.925
40 H 0.070 0.930
41 H 0.069 0.931
42 H 0.060 0.940
43 H 0.077 0.923
44 H 0.061 0.939
45 H 0.019 0.981
46 H 0.091 0.909
47 H 0.254 0.746
48 H 0.019 0.981
49 H 0.056 0.944
50 H 0.050 0.950
51 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.435 8.473 -18.553 21.387
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.125 4.125
3 N -0.076 5.076
4 O 0.031 5.969
5 C -0.082 4.082
6 C -0.131 4.131
7 C -0.185 4.185
8 C -0.102 4.102
9 C 0.299 3.701
10 O -0.414 6.414
11 N -0.339 5.339
12 C -0.016 4.016
13 C -0.173 4.173
14 C -0.141 4.141
15 C -0.135 4.135
16 H 0.075 0.925
17 C 0.051 3.949
18 N -0.311 5.311
19 C -0.380 4.380
20 H 0.083 0.917
21 C -0.195 4.195
22 N -0.546 5.546
23 Si 0.729 3.271
24 H -0.214 1.214
25 H -0.216 1.216
26 H -0.205 1.205
27 C 0.019 3.981
28 C -0.181 4.181
29 C 0.055 3.945
30 H 0.111 0.889
31 H 0.101 0.899
32 H 0.094 0.906
33 H 0.097 0.903
34 H 0.105 0.895
35 H 0.103 0.897
36 H 0.108 0.892
37 H 0.121 0.879
38 H 0.122 0.878
39 H 0.094 0.906
40 H 0.088 0.912
41 H 0.087 0.913
42 H 0.078 0.922
43 H 0.095 0.905
44 H 0.079 0.921
45 H 0.037 0.963
46 H 0.109 0.891
47 H 0.064 0.936
48 H 0.037 0.963
49 H 0.074 0.926
50 H 0.069 0.931
51 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 6.193 10.180 -17.943 21.539
hybrid contribution -0.550 -1.712 0.143 1.804
sum 5.643 8.468 -17.800 20.503
Atomic orbital electron populations
1.20162 0.86127 1.03348 1.03708 1.23343 0.98801 0.88398 1.01946
1.73802 0.89233 1.23857 1.20755 1.84772 1.21686 1.22377 1.68057
1.24147 0.98053 0.83844 1.02198 1.20333 0.90203 0.98853 1.03707
1.20245 0.91878 0.96026 1.10399 1.19945 1.04049 0.90302 0.95913
1.20374 0.77250 0.81735 0.90746 1.90716 1.50020 1.54267 1.46349
1.48614 1.67638 1.09435 1.08232 1.21723 0.97856 0.93001 0.89041
1.21976 0.96072 1.00087 0.99195 1.21430 1.02777 0.98187 0.91740
1.22009 0.94642 0.97095 0.99799 0.92518 1.20699 0.93774 0.92228
0.88220 1.44024 0.98950 1.10473 1.77624 1.19116 1.06690 0.84211
1.27971 0.91742 1.25035 1.00320 0.97143 0.97013 1.70031 1.18919
1.30809 1.34828 0.86345 0.77822 0.84942 0.77945 1.21436 1.21612
1.20504 1.20877 0.88640 0.96693 0.91907 1.22129 0.96900 0.98109
1.00967 1.21084 0.95986 0.96331 0.81067 0.88869 0.89907 0.90590
0.90277 0.89453 0.89671 0.89190 0.87869 0.87789 0.90638 0.91164
0.91262 0.92154 0.90479 0.92075 0.96301 0.89053 0.93617 0.96288
0.92550 0.93108 0.91591
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.77 10.39 36.00 0.37 -0.39 16
2 C 0.03 0.44 7.33 -82.10 -0.60 -0.16 16
3 N -0.37 -5.30 12.07 33.42 0.40 -4.90 16
4 O 0.09 1.25 11.20 17.17 0.19 1.44 16
5 C -0.02 -0.21 7.49 -35.31 -0.26 -0.48 16
6 C -0.07 -0.54 10.25 36.01 0.37 -0.17 16
7 C -0.18 -2.16 4.81 -104.42 -0.50 -2.66 16
8 C -0.06 -0.61 4.31 -29.03 -0.12 -0.73 16
9 C 0.51 7.16 7.70 -10.99 -0.08 7.07 16
10 O -0.54 -9.91 15.51 5.55 0.09 -9.83 16
11 N -0.61 -8.24 2.62 -165.80 -0.43 -8.67 16
12 C 0.11 1.11 5.84 -3.69 -0.02 1.09 16
13 C -0.14 -1.56 6.08 -26.57 -0.16 -1.72 16
14 C -0.10 -1.65 4.86 -26.75 -0.13 -1.78 16
15 C -0.11 -2.06 2.50 -90.76 -0.23 -2.29 16
16 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16
17 C 0.18 4.05 4.68 -3.94 -0.02 4.03 16
18 N -0.59 -13.93 2.63 -172.62 -0.45 -14.38 16
19 C -0.25 -6.53 9.60 -15.06 -0.14 -6.68 16
20 H 0.06 1.66 7.88 -52.49 -0.41 1.24 16
21 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16
22 N -0.90 -25.49 11.20 55.49 0.62 -24.87 16
23 Si 0.90 21.01 29.59 -169.99 -5.03 15.98 16
24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16
25 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16
26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
27 C 0.15 2.96 6.50 -3.73 -0.02 2.93 16
28 C -0.14 -2.35 4.93 -27.42 -0.14 -2.49 16
29 C 0.16 2.66 2.55 -68.17 -0.17 2.48 16
30 H 0.09 1.84 7.10 -51.93 -0.37 1.47 16
31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16
32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16
33 H 0.08 0.63 7.65 -51.93 -0.40 0.23 16
34 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16
35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16
36 H 0.09 0.67 8.05 -51.93 -0.42 0.26 16
37 H 0.10 0.73 7.88 -51.93 -0.41 0.32 16
38 H 0.10 0.82 7.22 -51.93 -0.37 0.44 16
39 H 0.08 0.55 5.96 -51.93 -0.31 0.24 16
40 H 0.07 0.71 7.18 -51.93 -0.37 0.34 16
41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16
43 H 0.08 1.35 6.17 -51.93 -0.32 1.03 16
44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
46 H 0.09 2.33 6.06 -51.93 -0.31 2.02 16
47 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16
48 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16
49 H 0.06 1.11 7.94 -51.93 -0.41 0.70 16
50 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16
51 H 0.07 1.07 5.26 -51.93 -0.27 0.80 16
LS Contribution 393.10 15.07 5.92 5.92
Total: -1.00 -32.50 393.10 -8.82 -41.32
By element:
Atomic # 1 Polarization: 8.08 SS G_CDS: -8.17 Total: -0.09 kcal
Atomic # 6 Polarization: 0.03 SS G_CDS: -1.96 Total: -1.93 kcal
Atomic # 7 Polarization: -52.96 SS G_CDS: 0.14 Total: -52.82 kcal
Atomic # 8 Polarization: -8.66 SS G_CDS: 0.28 Total: -8.38 kcal
Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal
Total LS contribution 5.92 Total: 5.92 kcal
Total: -32.50 -8.82 -41.32 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001021733484.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.579 kcal
(2) G-P(sol) polarization free energy of solvation -32.505 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.074 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.323 kcal
(6) G-S(sol) free energy of system = (1) + (5) 40.256 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds