Wall clock time and date at job start Wed Apr 1 2020 04:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30180 * 126.80090 * 2 1 4 4 O 1.20925 * 111.60096 * 180.25583 * 3 2 1 5 5 C 1.34043 * 111.56914 * 359.74518 * 4 3 2 6 6 C 1.50700 * 126.77569 * 180.02562 * 5 4 3 7 7 C 1.35444 * 106.44722 * 359.97438 * 5 4 3 8 8 C 1.50698 * 128.01118 * 179.97438 * 7 5 4 9 9 C 1.50709 * 109.46942 * 90.00170 * 8 7 5 10 10 O 1.21284 * 119.99507 * 0.02562 * 9 8 7 11 11 N 1.34766 * 119.99842 * 180.02562 * 9 8 7 12 12 C 1.46951 * 120.85009 * 0.02562 * 11 9 8 13 13 C 1.53198 * 109.03741 * 234.00314 * 12 11 9 14 14 C 1.53115 * 109.44693 * 305.93519 * 13 12 11 15 15 C 1.52852 * 109.36727 * 60.63969 * 14 13 12 16 16 H 1.09003 * 109.25062 * 57.50307 * 15 14 13 17 17 C 1.52776 * 110.20338 * 177.54750 * 15 14 13 18 18 N 1.46889 * 109.19174 * 67.35649 * 17 15 14 19 19 C 1.36939 * 120.77201 * 233.36308 * 18 17 15 20 20 H 1.07995 * 119.99702 * 151.95240 * 19 18 17 21 21 C 1.38807 * 120.00312 * 331.95557 * 19 18 17 22 22 N 1.31628 * 119.99794 * 343.12785 * 21 19 18 23 23 Si 1.86798 * 120.00185 * 163.13550 * 21 19 18 24 24 H 1.48497 * 109.47297 * 89.99564 * 23 21 19 25 25 H 1.48498 * 109.46962 * 209.99901 * 23 21 19 26 26 H 1.48504 * 109.46974 * 329.99651 * 23 21 19 27 27 C 1.46976 * 118.44957 * 53.34916 * 18 17 15 28 28 C 1.53093 * 108.61760 * 305.67475 * 27 18 17 29 29 C 1.47315 * 120.84443 * 180.02562 * 11 9 8 30 30 H 1.08992 * 110.67449 * 4.58003 * 29 11 9 31 31 H 1.08998 * 109.46991 * 270.16508 * 1 2 3 32 32 H 1.08997 * 109.47308 * 30.16261 * 1 2 3 33 33 H 1.09000 * 109.46883 * 150.16864 * 1 2 3 34 34 H 1.08996 * 109.47038 * 270.00107 * 6 5 4 35 35 H 1.09001 * 109.47151 * 30.00104 * 6 5 4 36 36 H 1.08999 * 109.47231 * 149.99618 * 6 5 4 37 37 H 1.09005 * 109.46642 * 330.00858 * 8 7 5 38 38 H 1.08992 * 109.47691 * 210.00586 * 8 7 5 39 39 H 1.08999 * 109.53818 * 353.86809 * 12 11 9 40 40 H 1.08995 * 109.54745 * 114.04555 * 12 11 9 41 41 H 1.08992 * 109.50223 * 185.92864 * 13 12 11 42 42 H 1.09004 * 109.46042 * 65.91701 * 13 12 11 43 43 H 1.09000 * 109.49366 * 300.66635 * 14 13 12 44 44 H 1.09001 * 109.49279 * 180.61454 * 14 13 12 45 45 H 1.09005 * 109.51291 * 187.27211 * 17 15 14 46 46 H 1.09000 * 109.52144 * 307.43834 * 17 15 14 47 47 H 0.97002 * 119.99493 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.61639 * 65.41908 * 27 18 17 49 49 H 1.09007 * 109.60928 * 185.94645 * 27 18 17 50 50 H 1.09001 * 109.45252 * 175.38123 * 28 27 18 51 51 H 1.09001 * 109.45433 * 295.34259 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7253 -0.0050 5 6 3.6024 -0.6068 -0.0036 6 6 4.9022 -1.3695 -0.0080 7 6 2.3540 -1.1320 0.0038 8 6 1.9590 -2.5863 0.0077 9 6 1.8350 -3.0693 1.4299 10 8 2.0460 -2.3073 2.3496 11 7 1.4895 -4.3478 1.6796 12 6 1.2302 -5.2869 0.5795 13 6 -0.1533 -5.9154 0.7747 14 6 -0.2390 -6.5354 2.1721 15 6 -0.0344 -5.4453 3.2238 16 1 -0.7827 -4.6652 3.0831 17 6 -0.1767 -6.0325 4.6270 18 7 0.9385 -6.9546 4.8798 19 6 0.7054 -8.2398 5.2911 20 1 1.4126 -9.0200 5.0516 21 6 -0.4400 -8.5398 6.0156 22 7 -1.1259 -7.5752 6.5914 23 14 -1.0077 -10.3124 6.1736 24 1 -0.3869 -10.9258 7.3751 25 1 -2.4862 -10.3485 6.3073 26 1 -0.6013 -11.0720 4.9640 27 6 2.3102 -6.4657 4.6809 28 6 2.4265 -5.8996 3.2632 29 6 1.3623 -4.8395 3.0625 30 1 1.5015 -4.0261 3.7745 31 1 -0.3633 0.0030 1.0277 32 1 -0.3634 0.8885 -0.5163 33 1 -0.3633 -0.8915 -0.5112 34 1 5.2111 -1.5550 -1.0366 35 1 5.6682 -0.7851 0.5017 36 1 4.7673 -2.3202 0.5080 37 1 2.7201 -3.1708 -0.5094 38 1 1.0023 -2.7045 -0.5009 39 1 1.2572 -4.7524 -0.3700 40 1 1.9903 -6.0681 0.5800 41 1 -0.3106 -6.6893 0.0235 42 1 -0.9192 -5.1469 0.6706 43 1 0.5348 -7.2954 2.2809 44 1 -1.2192 -6.9924 2.3078 45 1 -0.1578 -5.2279 5.3621 46 1 -1.1203 -6.5730 4.7017 47 1 -1.9265 -7.7849 7.0974 48 1 2.5283 -5.6823 5.4067 49 1 3.0136 -7.2891 4.8048 50 1 3.4142 -5.4589 3.1282 51 1 2.2849 -6.7021 2.5391 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021733484.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:26 Heat of formation + Delta-G solvation = 21.433986 kcal Electronic energy + Delta-G solvation = -32347.153671 eV Core-core repulsion = 28249.236338 eV Total energy + Delta-G solvation = -4097.917333 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.88975 -41.65999 -39.56405 -37.06570 -36.25795 -34.63069 -34.32407 -33.94397 -32.05422 -31.29090 -30.47325 -29.59592 -28.11211 -27.22699 -26.19100 -24.21876 -23.51054 -23.04440 -22.63299 -21.19752 -20.28053 -19.37343 -18.74794 -18.47306 -18.09060 -17.76169 -16.95039 -16.75678 -16.46146 -15.96974 -15.49160 -15.27493 -15.20304 -15.00267 -14.74965 -14.50819 -14.31299 -14.22643 -13.99225 -13.94881 -13.79443 -13.69531 -13.53592 -13.40590 -13.18599 -13.12114 -12.90140 -12.86322 -12.55572 -12.49520 -12.17451 -11.96732 -11.89458 -11.82074 -11.72870 -11.41366 -11.30402 -11.06903 -10.96364 -10.65904 -10.51669 -10.02477 -9.49394 -8.67446 -7.85645 -5.31259 0.51262 1.16980 1.48050 1.49533 1.58973 1.68807 2.09258 2.25614 2.52642 3.23593 3.30580 3.53702 3.60253 3.67276 3.78733 3.89440 4.00961 4.03489 4.05992 4.18137 4.28424 4.35912 4.41126 4.46774 4.53054 4.59090 4.63092 4.64660 4.69917 4.70975 4.75589 4.77593 4.82866 4.89685 4.92981 4.99953 5.03031 5.08049 5.13592 5.16637 5.19894 5.26304 5.29500 5.34794 5.48950 5.61846 5.65854 5.69834 5.73646 6.39729 6.57116 7.15285 7.25797 7.32346 7.85606 8.39673 9.21284 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022127 B = 0.002645 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.097532 B =10584.016037 C =10768.256482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.020 3.980 3 N -0.405 5.405 4 O 0.078 5.922 5 C -0.019 4.019 6 C -0.073 4.073 7 C -0.198 4.198 8 C -0.050 4.050 9 C 0.510 3.490 10 O -0.591 6.591 11 N -0.602 5.602 12 C 0.102 3.898 13 C -0.127 4.127 14 C -0.098 4.098 15 C -0.103 4.103 16 H 0.052 0.948 17 C 0.187 3.813 18 N -0.601 5.601 19 C -0.253 4.253 20 H 0.071 0.929 21 C -0.051 4.051 22 N -0.939 5.939 23 Si 0.965 3.035 24 H -0.289 1.289 25 H -0.296 1.296 26 H -0.264 1.264 27 C 0.141 3.859 28 C -0.122 4.122 29 C 0.165 3.835 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.144 0.856 38 H 0.134 0.866 39 H 0.123 0.877 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.043 0.957 45 H -0.022 1.022 46 H 0.059 0.941 47 H 0.248 0.752 48 H 0.001 0.999 49 H 0.063 0.937 50 H 0.069 0.931 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.660 6.925 -22.680 24.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.139 4.139 3 N -0.115 5.115 4 O 0.017 5.983 5 C -0.082 4.082 6 C -0.130 4.130 7 C -0.203 4.203 8 C -0.090 4.090 9 C 0.300 3.700 10 O -0.471 6.471 11 N -0.334 5.334 12 C -0.019 4.019 13 C -0.164 4.164 14 C -0.136 4.136 15 C -0.124 4.124 16 H 0.071 0.929 17 C 0.061 3.939 18 N -0.324 5.324 19 C -0.383 4.383 20 H 0.089 0.911 21 C -0.246 4.246 22 N -0.585 5.585 23 Si 0.793 3.207 24 H -0.216 1.216 25 H -0.223 1.223 26 H -0.189 1.189 27 C 0.014 3.986 28 C -0.162 4.162 29 C 0.061 3.939 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.124 0.876 34 H 0.137 0.863 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.161 0.839 38 H 0.152 0.848 39 H 0.141 0.859 40 H 0.101 0.899 41 H 0.118 0.882 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.062 0.938 45 H -0.004 1.004 46 H 0.078 0.922 47 H 0.057 0.943 48 H 0.019 0.981 49 H 0.081 0.919 50 H 0.088 0.912 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.457 8.616 -22.125 24.887 hybrid contribution -0.880 -1.186 1.517 2.117 sum 6.577 7.430 -20.608 22.872 Atomic orbital electron populations 1.20268 0.84701 1.05101 1.03307 1.23911 1.00041 0.88755 1.01153 1.73787 0.89870 1.25149 1.22645 1.84724 1.21431 1.23676 1.68487 1.24935 0.99679 0.83220 1.00398 1.20548 0.88391 0.98265 1.05827 1.20562 0.91806 0.96892 1.11023 1.20042 1.06938 0.89140 0.92872 1.21149 0.75759 0.80969 0.92121 1.90711 1.52288 1.55639 1.48478 1.48557 1.67369 1.10182 1.07300 1.22087 0.97200 0.93165 0.89486 1.21936 0.97261 1.00915 0.96332 1.21341 1.01245 0.96966 0.94030 1.21767 0.95659 0.97655 0.97351 0.92935 1.20430 0.92415 0.90569 0.90510 1.44229 1.00379 1.10063 1.77724 1.19475 1.06548 0.85348 1.26942 0.91099 1.25798 1.00776 1.00778 0.97277 1.70212 1.19282 1.32811 1.36210 0.85314 0.76680 0.80547 0.78139 1.21560 1.22274 1.18898 1.21021 0.86965 0.96490 0.94082 1.21913 0.97702 0.98202 0.98365 1.20610 0.95027 0.95145 0.83089 0.92557 0.91228 0.89811 0.87649 0.86268 0.89169 0.88889 0.83873 0.84815 0.85894 0.89868 0.88202 0.91626 0.91803 0.93842 1.00421 0.92233 0.94297 0.98120 0.91879 0.91224 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.39 71.23 0.74 -0.70 16 2 C 0.02 0.50 7.33 43.58 0.32 0.82 16 3 N -0.40 -11.59 12.07 -49.55 -0.60 -12.19 16 4 O 0.08 2.02 11.20 71.60 0.80 2.82 16 5 C -0.02 -0.39 7.49 25.04 0.19 -0.20 16 6 C -0.07 -0.84 10.25 71.24 0.73 -0.11 16 7 C -0.20 -4.22 4.81 -19.74 -0.10 -4.31 16 8 C -0.05 -0.75 4.31 29.10 0.13 -0.63 16 9 C 0.51 12.87 7.70 87.66 0.68 13.55 16 10 O -0.59 -21.62 15.51 -3.04 -0.05 -21.67 16 11 N -0.60 -14.52 2.62 -796.85 -2.09 -16.60 16 12 C 0.10 1.54 5.84 86.36 0.50 2.04 16 13 C -0.13 -2.35 6.08 30.70 0.19 -2.16 16 14 C -0.10 -2.98 4.86 30.58 0.15 -2.83 16 15 C -0.10 -3.79 2.50 -10.88 -0.03 -3.82 16 16 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 17 C 0.19 9.08 4.68 86.23 0.40 9.48 16 18 N -0.60 -29.36 2.63 -700.05 -1.84 -31.19 16 19 C -0.25 -13.41 9.60 84.03 0.81 -12.61 16 20 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 21 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 22 N -0.94 -55.61 11.20 21.65 0.24 -55.37 16 23 Si 0.97 43.85 29.59 68.60 2.03 45.88 16 24 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 25 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 26 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 27 C 0.14 5.77 6.50 86.32 0.56 6.33 16 28 C -0.12 -3.90 4.93 30.15 0.15 -3.75 16 29 C 0.16 5.51 2.55 44.39 0.11 5.63 16 30 H 0.06 2.32 7.10 -2.39 -0.02 2.30 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.10 1.35 7.65 -2.39 -0.02 1.34 16 34 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 1.05 8.05 -2.39 -0.02 1.03 16 37 H 0.14 1.04 7.88 -2.38 -0.02 1.02 16 38 H 0.13 1.25 7.22 -2.39 -0.02 1.24 16 39 H 0.12 0.81 5.96 -2.39 -0.01 0.80 16 40 H 0.08 1.15 7.18 -2.39 -0.02 1.13 16 41 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.06 2.11 6.17 -2.39 -0.01 2.10 16 44 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 45 H -0.02 -1.22 8.14 -2.38 -0.02 -1.24 16 46 H 0.06 3.25 6.06 -2.39 -0.01 3.23 16 47 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 48 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 49 H 0.06 2.46 7.94 -2.38 -0.02 2.44 16 50 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 51 H 0.08 2.39 5.26 -2.39 -0.01 2.38 16 Total: -1.00 -78.07 393.10 5.38 -72.69 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.93 Total: 11.28 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 5.95 Total: 4.34 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -4.28 Total: -115.35 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: 0.75 Total: -18.84 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -78.07 5.38 -72.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021733484.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.119 kcal (2) G-P(sol) polarization free energy of solvation -78.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds