Wall clock time and date at job start Wed Apr 1 2020 04:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30023 * 127.32782 * 2 1 4 4 O 1.20664 * 112.29691 * 180.02562 * 3 2 1 5 5 C 1.33498 * 113.15473 * 359.71576 * 4 3 2 6 6 C 1.50700 * 126.82457 * 180.30948 * 5 4 3 7 7 C 1.37354 * 106.34121 * 0.45184 * 5 4 3 8 8 C 1.47400 * 128.56079 * 179.85399 * 7 5 4 9 9 O 1.21606 * 120.00439 * 269.67510 * 8 7 5 10 10 N 1.34782 * 120.00187 * 89.68023 * 8 7 5 11 11 C 1.46925 * 120.62845 * 6.19989 * 10 8 7 12 12 C 1.53189 * 108.77960 * 126.41320 * 11 10 8 13 13 C 1.53045 * 109.30838 * 54.63312 * 12 11 10 14 14 C 1.53035 * 109.53983 * 298.63773 * 13 12 11 15 15 C 1.46922 * 120.63411 * 186.22486 * 10 8 7 16 16 H 1.08997 * 109.59079 * 113.65316 * 15 10 8 17 17 C 1.53002 * 109.58561 * 353.36973 * 15 10 8 18 18 H 1.08998 * 109.99727 * 315.59157 * 17 15 10 19 19 C 1.54318 * 109.88094 * 76.68590 * 17 15 10 20 20 C 1.55162 * 103.10268 * 141.69773 * 19 17 15 21 21 C 1.54906 * 101.58086 * 324.41171 * 20 19 17 22 22 N 1.47426 * 104.83333 * 37.00723 * 21 20 19 23 23 C 1.36943 * 125.65129 * 155.83855 * 22 21 20 24 24 H 1.07998 * 120.00232 * 198.05684 * 23 22 21 25 25 C 1.38811 * 119.99604 * 18.05536 * 23 22 21 26 26 N 1.31620 * 120.00225 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 119.99986 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47002 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47240 * 119.99642 * 27 25 23 30 30 H 1.48496 * 109.47178 * 240.00236 * 27 25 23 31 31 H 1.08999 * 109.47215 * 269.95182 * 1 2 3 32 32 H 1.08997 * 109.47670 * 29.96324 * 1 2 3 33 33 H 1.09012 * 109.46730 * 149.95959 * 1 2 3 34 34 H 1.08995 * 109.47349 * 270.16929 * 6 5 4 35 35 H 1.08997 * 109.47475 * 30.17493 * 6 5 4 36 36 H 1.09005 * 109.47055 * 150.17090 * 6 5 4 37 37 H 1.08997 * 109.58768 * 246.20644 * 11 10 8 38 38 H 1.09002 * 109.58647 * 6.62205 * 11 10 8 39 39 H 1.08999 * 109.49882 * 174.58740 * 12 11 10 40 40 H 1.08998 * 109.49576 * 294.65545 * 12 11 10 41 41 H 1.09001 * 109.45817 * 58.66209 * 13 12 11 42 42 H 1.09005 * 109.45490 * 178.62827 * 13 12 11 43 43 H 1.09009 * 109.49897 * 301.41581 * 14 13 12 44 44 H 1.08997 * 109.49786 * 181.32055 * 14 13 12 45 45 H 1.08999 * 110.72225 * 23.25273 * 19 17 15 46 46 H 1.08999 * 110.72264 * 260.15207 * 19 17 15 47 47 H 1.09000 * 110.99932 * 82.48198 * 20 19 17 48 48 H 1.08991 * 111.00899 * 206.29810 * 20 19 17 49 49 H 1.09002 * 110.36750 * 155.84350 * 21 20 19 50 50 H 1.08998 * 110.37129 * 278.05863 * 21 20 19 51 51 H 0.97003 * 119.99751 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0339 0.0000 4 8 3.4607 0.7210 -0.0005 5 6 3.6494 -0.6006 0.0052 6 6 4.9712 -1.3243 0.0128 7 6 2.3992 -1.1694 -0.0006 8 6 2.0403 -2.5991 -0.0009 9 8 1.8918 -3.1886 -1.0541 10 7 1.8765 -3.2530 1.1662 11 6 1.9184 -2.5275 2.4431 12 6 0.6443 -2.8444 3.2324 13 6 0.5021 -4.3615 3.3759 14 6 0.3821 -4.9977 1.9892 15 6 1.6533 -4.7051 1.1858 16 1 2.5051 -5.1995 1.6527 17 6 1.4844 -5.2174 -0.2460 18 1 0.8255 -4.5526 -0.8045 19 6 2.8602 -5.2977 -0.9403 20 6 2.7538 -6.5964 -1.7826 21 6 1.8990 -7.4980 -0.8574 22 7 0.9273 -6.5829 -0.2315 23 6 -0.2923 -6.9408 0.2783 24 1 -1.0485 -6.1887 0.4478 25 6 -0.5564 -8.2704 0.5772 26 7 0.3651 -9.1871 0.3702 27 14 -2.2202 -8.7587 1.2720 28 1 -3.0732 -7.5509 1.4093 29 1 -2.8749 -9.7261 0.3551 30 1 -2.0349 -9.3872 2.6046 31 1 -0.3633 -0.0009 1.0276 32 1 -0.3634 0.8903 -0.5132 33 1 -0.3633 -0.8897 -0.5145 34 1 5.2952 -1.4999 -1.0130 35 1 5.7147 -0.7176 0.5298 36 1 4.8599 -2.2788 0.5272 37 1 2.7907 -2.8440 3.0148 38 1 1.9731 -1.4556 2.2527 39 1 0.7062 -2.3896 4.2211 40 1 -0.2207 -2.4460 2.7022 41 1 1.3790 -4.7619 3.8845 42 1 -0.3909 -4.5890 3.9581 43 1 -0.4805 -4.5794 1.4704 44 1 0.2574 -6.0755 2.0930 45 1 3.6596 -5.3802 -0.2039 46 1 3.0185 -4.4324 -1.5839 47 1 2.2422 -6.4089 -2.7267 48 1 3.7378 -7.0328 -1.9538 49 1 1.3816 -8.2589 -1.4418 50 1 2.5261 -7.9652 -0.0981 51 1 0.1805 -10.1162 0.5794 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025202320.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:47 Heat of formation + Delta-G solvation = 80.735574 kcal Electronic energy + Delta-G solvation = -33645.650210 eV Core-core repulsion = 29550.304388 eV Total energy + Delta-G solvation = -4095.345823 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.93174 -40.43298 -37.29373 -36.75432 -34.65254 -33.71874 -32.70716 -32.23035 -31.31676 -29.09628 -28.87272 -28.16595 -27.13282 -25.11695 -24.55561 -23.80663 -22.36540 -21.09239 -20.20699 -19.80549 -19.41607 -19.12019 -17.86955 -17.35039 -16.89473 -15.87684 -15.77616 -15.12621 -15.04983 -14.41535 -14.10464 -14.02443 -13.90661 -13.79297 -13.63322 -13.32714 -13.24553 -13.04004 -12.95342 -12.81911 -12.59411 -12.49895 -12.20040 -11.92797 -11.67525 -11.43223 -11.19470 -11.03510 -10.91312 -10.85026 -10.73133 -10.56338 -10.11155 -10.06348 -10.00316 -9.94872 -9.75610 -9.49172 -9.44680 -9.29551 -8.80439 -8.36617 -8.13286 -6.59447 -5.72226 -3.05084 1.24407 1.84771 2.57494 2.79002 3.27568 3.38307 3.45217 3.46556 4.00654 4.17191 4.51142 4.62441 4.82934 4.89940 5.05833 5.08602 5.17915 5.21258 5.29749 5.34347 5.40211 5.45217 5.48524 5.54591 5.60443 5.62950 5.71954 5.73803 5.80527 5.89721 5.92430 6.02916 6.09520 6.11040 6.22000 6.28684 6.33578 6.53446 6.62422 6.63727 6.78711 6.90721 6.95794 7.08694 7.34145 7.54779 7.61463 7.65955 7.74619 7.86041 8.13963 8.30653 8.48363 9.24859 9.86378 10.60070 11.39866 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014740 B = 0.003985 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.169430 B = 7024.258049 C = 7902.550826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.052 3.948 3 N -0.360 5.360 4 O 0.092 5.908 5 C 0.007 3.993 6 C -0.076 4.076 7 C -0.236 4.236 8 C 0.580 3.420 9 O -0.495 6.495 10 N -0.592 5.592 11 C 0.111 3.889 12 C -0.132 4.132 13 C -0.124 4.124 14 C -0.127 4.127 15 C 0.140 3.860 16 H 0.061 0.939 17 C 0.161 3.839 18 H 0.075 0.925 19 C -0.119 4.119 20 C -0.150 4.150 21 C 0.176 3.824 22 N -0.597 5.597 23 C -0.219 4.219 24 H 0.076 0.924 25 C -0.005 4.005 26 N -0.912 5.912 27 Si 0.899 3.101 28 H -0.279 1.279 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.119 0.881 45 H 0.042 0.958 46 H 0.086 0.914 47 H 0.055 0.945 48 H 0.050 0.950 49 H 0.060 0.940 50 H 0.024 0.976 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.145 16.381 3.916 18.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 N -0.067 5.067 4 O 0.030 5.970 5 C -0.056 4.056 6 C -0.133 4.133 7 C -0.243 4.243 8 C 0.366 3.634 9 O -0.370 6.370 10 N -0.326 5.326 11 C -0.012 4.012 12 C -0.170 4.170 13 C -0.161 4.161 14 C -0.165 4.165 15 C 0.037 3.963 16 H 0.079 0.921 17 C 0.055 3.945 18 H 0.092 0.908 19 C -0.156 4.156 20 C -0.189 4.189 21 C 0.051 3.949 22 N -0.322 5.322 23 C -0.347 4.347 24 H 0.093 0.907 25 C -0.202 4.202 26 N -0.559 5.559 27 Si 0.730 3.270 28 H -0.204 1.204 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.137 0.863 45 H 0.061 0.939 46 H 0.104 0.896 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.078 0.922 50 H 0.042 0.958 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.768 17.146 3.408 18.746 hybrid contribution -0.912 -1.053 0.670 1.546 sum 5.856 16.093 4.078 17.605 Atomic orbital electron populations 1.20222 0.85295 1.04337 1.03675 1.24758 0.98534 0.86696 1.01048 1.73596 0.89202 1.23464 1.20468 1.84503 1.21466 1.22749 1.68282 1.24575 0.97486 0.83597 0.99973 1.20427 0.88945 0.99206 1.04764 1.22202 0.92541 0.96026 1.13551 1.16970 0.78752 0.83278 0.84425 1.90848 1.48781 1.65330 1.32073 1.48287 1.70144 1.09334 1.04789 1.21630 0.98391 0.96202 0.85001 1.21905 0.97598 0.98048 0.99458 1.21645 1.01462 0.93888 0.99144 1.22354 0.96666 1.04780 0.92664 1.22320 0.97369 0.75642 1.00996 0.92058 1.21771 0.94657 0.87770 0.90327 0.90759 1.22918 0.96110 0.97915 0.98687 1.23002 0.99273 0.97503 0.99087 1.21314 0.89762 0.91166 0.92707 1.44850 1.16391 1.02490 1.68457 1.19018 0.88970 0.92474 1.34287 0.90668 1.24934 0.97573 0.96424 1.01245 1.69961 1.32535 1.00611 1.52777 0.86234 0.83795 0.78371 0.78634 1.20378 1.21817 1.21763 0.89808 0.90125 0.89511 0.88737 0.89390 0.88816 0.91701 0.90968 0.91563 0.91765 0.92440 0.92171 0.92391 0.86281 0.93936 0.89615 0.92639 0.93094 0.92193 0.95820 0.93834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.49 36.00 0.38 -0.45 16 2 C 0.05 0.67 7.37 -79.77 -0.59 0.08 16 3 N -0.36 -4.78 12.01 34.78 0.42 -4.36 16 4 O 0.09 1.11 11.06 18.64 0.21 1.32 16 5 C 0.01 0.08 7.55 -34.63 -0.26 -0.18 16 6 C -0.08 -0.60 10.33 36.01 0.37 -0.23 16 7 C -0.24 -3.16 4.31 -102.90 -0.44 -3.60 16 8 C 0.58 9.04 7.12 -12.53 -0.09 8.95 16 9 O -0.49 -9.28 9.92 5.27 0.05 -9.23 16 10 N -0.59 -8.81 2.97 -166.49 -0.49 -9.31 16 11 C 0.11 1.32 6.31 -3.71 -0.02 1.29 16 12 C -0.13 -1.55 6.08 -26.61 -0.16 -1.71 16 13 C -0.12 -1.76 5.88 -26.69 -0.16 -1.92 16 14 C -0.13 -2.32 3.80 -26.61 -0.10 -2.42 16 15 C 0.14 2.53 2.70 -67.60 -0.18 2.35 16 16 H 0.06 1.16 7.77 -51.93 -0.40 0.76 16 17 C 0.16 3.40 2.34 -66.70 -0.16 3.24 16 18 H 0.08 1.74 5.79 -52.12 -0.30 1.44 16 19 C -0.12 -2.29 5.41 -24.90 -0.13 -2.43 16 20 C -0.15 -3.05 7.09 -24.58 -0.17 -3.22 16 21 C 0.18 4.29 5.37 -2.53 -0.01 4.28 16 22 N -0.60 -14.73 3.10 -162.23 -0.50 -15.23 16 23 C -0.22 -5.72 6.77 -15.06 -0.10 -5.82 16 24 H 0.08 1.94 6.40 -52.49 -0.34 1.60 16 25 C 0.00 -0.12 5.46 -17.43 -0.10 -0.22 16 26 N -0.91 -26.03 10.72 55.49 0.59 -25.43 16 27 Si 0.90 21.36 29.55 -169.99 -5.02 16.34 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 30 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.78 8.11 -51.93 -0.42 0.36 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.80 6.22 -51.93 -0.32 0.48 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 1.13 7.28 -51.92 -0.38 0.75 16 44 H 0.12 2.63 5.64 -51.93 -0.29 2.34 16 45 H 0.04 0.78 7.61 -51.93 -0.40 0.38 16 46 H 0.09 1.65 5.58 -51.89 -0.29 1.36 16 47 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 48 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.06 1.63 7.18 -51.93 -0.37 1.26 16 50 H 0.02 0.62 7.98 -51.93 -0.41 0.21 16 51 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 386.61 15.07 5.83 5.83 Total: -1.00 -30.32 386.61 -8.99 -39.31 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -8.14 Total: 2.78 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -1.93 Total: -2.01 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.01 Total: -54.33 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.26 Total: -7.91 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.32 -8.99 -39.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025202320.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.047 kcal (2) G-P(sol) polarization free energy of solvation -30.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds