Wall clock time and date at job start Wed Apr 1 2020 04:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30023 * 127.32782 * 2 1 4 4 O 1.20664 * 112.29691 * 180.02562 * 3 2 1 5 5 C 1.33498 * 113.15473 * 359.71576 * 4 3 2 6 6 C 1.50700 * 126.82457 * 180.30948 * 5 4 3 7 7 C 1.37354 * 106.34121 * 0.45184 * 5 4 3 8 8 C 1.47400 * 128.56079 * 179.85399 * 7 5 4 9 9 O 1.21606 * 120.00439 * 269.67510 * 8 7 5 10 10 N 1.34782 * 120.00187 * 89.68023 * 8 7 5 11 11 C 1.46925 * 120.62845 * 6.19989 * 10 8 7 12 12 C 1.53189 * 108.77960 * 126.41320 * 11 10 8 13 13 C 1.53045 * 109.30838 * 54.63312 * 12 11 10 14 14 C 1.53035 * 109.53983 * 298.63773 * 13 12 11 15 15 C 1.46922 * 120.63411 * 186.22486 * 10 8 7 16 16 H 1.08997 * 109.59079 * 113.65316 * 15 10 8 17 17 C 1.53002 * 109.58561 * 353.36973 * 15 10 8 18 18 H 1.08998 * 109.99727 * 315.59157 * 17 15 10 19 19 C 1.54318 * 109.88094 * 76.68590 * 17 15 10 20 20 C 1.55162 * 103.10268 * 141.69773 * 19 17 15 21 21 C 1.54906 * 101.58086 * 324.41171 * 20 19 17 22 22 N 1.47426 * 104.83333 * 37.00723 * 21 20 19 23 23 C 1.36943 * 125.65129 * 155.83855 * 22 21 20 24 24 H 1.07998 * 120.00232 * 198.05684 * 23 22 21 25 25 C 1.38811 * 119.99604 * 18.05536 * 23 22 21 26 26 N 1.31620 * 120.00225 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 119.99986 * 180.02562 * 25 23 22 28 28 H 1.48502 * 109.47002 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47240 * 119.99642 * 27 25 23 30 30 H 1.48496 * 109.47178 * 240.00236 * 27 25 23 31 31 H 1.08999 * 109.47215 * 269.95182 * 1 2 3 32 32 H 1.08997 * 109.47670 * 29.96324 * 1 2 3 33 33 H 1.09012 * 109.46730 * 149.95959 * 1 2 3 34 34 H 1.08995 * 109.47349 * 270.16929 * 6 5 4 35 35 H 1.08997 * 109.47475 * 30.17493 * 6 5 4 36 36 H 1.09005 * 109.47055 * 150.17090 * 6 5 4 37 37 H 1.08997 * 109.58768 * 246.20644 * 11 10 8 38 38 H 1.09002 * 109.58647 * 6.62205 * 11 10 8 39 39 H 1.08999 * 109.49882 * 174.58740 * 12 11 10 40 40 H 1.08998 * 109.49576 * 294.65545 * 12 11 10 41 41 H 1.09001 * 109.45817 * 58.66209 * 13 12 11 42 42 H 1.09005 * 109.45490 * 178.62827 * 13 12 11 43 43 H 1.09009 * 109.49897 * 301.41581 * 14 13 12 44 44 H 1.08997 * 109.49786 * 181.32055 * 14 13 12 45 45 H 1.08999 * 110.72225 * 23.25273 * 19 17 15 46 46 H 1.08999 * 110.72264 * 260.15207 * 19 17 15 47 47 H 1.09000 * 110.99932 * 82.48198 * 20 19 17 48 48 H 1.08991 * 111.00899 * 206.29810 * 20 19 17 49 49 H 1.09002 * 110.36750 * 155.84350 * 21 20 19 50 50 H 1.08998 * 110.37129 * 278.05863 * 21 20 19 51 51 H 0.97003 * 119.99751 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0339 0.0000 4 8 3.4607 0.7210 -0.0005 5 6 3.6494 -0.6006 0.0052 6 6 4.9712 -1.3243 0.0128 7 6 2.3992 -1.1694 -0.0006 8 6 2.0403 -2.5991 -0.0009 9 8 1.8918 -3.1886 -1.0541 10 7 1.8765 -3.2530 1.1662 11 6 1.9184 -2.5275 2.4431 12 6 0.6443 -2.8444 3.2324 13 6 0.5021 -4.3615 3.3759 14 6 0.3821 -4.9977 1.9892 15 6 1.6533 -4.7051 1.1858 16 1 2.5051 -5.1995 1.6527 17 6 1.4844 -5.2174 -0.2460 18 1 0.8255 -4.5526 -0.8045 19 6 2.8602 -5.2977 -0.9403 20 6 2.7538 -6.5964 -1.7826 21 6 1.8990 -7.4980 -0.8574 22 7 0.9273 -6.5829 -0.2315 23 6 -0.2923 -6.9408 0.2783 24 1 -1.0485 -6.1887 0.4478 25 6 -0.5564 -8.2704 0.5772 26 7 0.3651 -9.1871 0.3702 27 14 -2.2202 -8.7587 1.2720 28 1 -3.0732 -7.5509 1.4093 29 1 -2.8749 -9.7261 0.3551 30 1 -2.0349 -9.3872 2.6046 31 1 -0.3633 -0.0009 1.0276 32 1 -0.3634 0.8903 -0.5132 33 1 -0.3633 -0.8897 -0.5145 34 1 5.2952 -1.4999 -1.0130 35 1 5.7147 -0.7176 0.5298 36 1 4.8599 -2.2788 0.5272 37 1 2.7907 -2.8440 3.0148 38 1 1.9731 -1.4556 2.2527 39 1 0.7062 -2.3896 4.2211 40 1 -0.2207 -2.4460 2.7022 41 1 1.3790 -4.7619 3.8845 42 1 -0.3909 -4.5890 3.9581 43 1 -0.4805 -4.5794 1.4704 44 1 0.2574 -6.0755 2.0930 45 1 3.6596 -5.3802 -0.2039 46 1 3.0185 -4.4324 -1.5839 47 1 2.2422 -6.4089 -2.7267 48 1 3.7378 -7.0328 -1.9538 49 1 1.3816 -8.2589 -1.4418 50 1 2.5261 -7.9652 -0.0981 51 1 0.1805 -10.1162 0.5794 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025202320.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:46 Heat of formation + Delta-G solvation = 64.097075 kcal Electronic energy + Delta-G solvation = -33646.371710 eV Core-core repulsion = 29550.304388 eV Total energy + Delta-G solvation = -4096.067322 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.88847 -41.77797 -38.83917 -38.14736 -35.65698 -34.64086 -34.51089 -33.57255 -32.71197 -30.95932 -29.77589 -29.10022 -28.52383 -26.63633 -26.22633 -24.92468 -23.73606 -22.35710 -21.67418 -21.16198 -20.92989 -20.30718 -18.98807 -18.74586 -18.18910 -17.32182 -17.11099 -16.70187 -16.32445 -15.94131 -15.66477 -15.34330 -15.07087 -14.94481 -14.50269 -14.39041 -14.22922 -14.13773 -13.99719 -13.97658 -13.86888 -13.63672 -13.54608 -13.42145 -13.37287 -13.04898 -12.75979 -12.70346 -12.40503 -12.18583 -12.09024 -11.94167 -11.90730 -11.68207 -11.45246 -11.40440 -11.20311 -10.99594 -10.85988 -10.58438 -10.39632 -10.10304 -9.44938 -8.59135 -7.79351 -5.13813 0.33338 0.87083 1.39138 1.45276 1.47190 1.56012 1.79586 2.18077 2.53833 3.06526 3.28789 3.36530 3.61123 3.77570 3.91233 3.94211 4.03039 4.09181 4.14392 4.24181 4.27404 4.34649 4.42668 4.47736 4.52046 4.54916 4.57439 4.61651 4.64263 4.66819 4.78410 4.79602 4.88839 4.96079 5.00203 5.04289 5.09112 5.10183 5.11666 5.20453 5.30432 5.36169 5.43642 5.57331 5.57836 5.68641 5.76503 5.81850 5.92459 6.29495 6.47427 7.15182 7.21437 7.22802 7.86553 8.57655 9.32572 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014740 B = 0.003985 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.169430 B = 7024.258049 C = 7902.550826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.049 3.951 3 N -0.374 5.374 4 O 0.093 5.907 5 C 0.030 3.970 6 C -0.078 4.078 7 C -0.263 4.263 8 C 0.586 3.414 9 O -0.533 6.533 10 N -0.588 5.588 11 C 0.110 3.890 12 C -0.125 4.125 13 C -0.118 4.118 14 C -0.119 4.119 15 C 0.153 3.847 16 H 0.057 0.943 17 C 0.161 3.839 18 H 0.053 0.947 19 C -0.105 4.105 20 C -0.139 4.139 21 C 0.183 3.817 22 N -0.614 5.614 23 C -0.210 4.210 24 H 0.074 0.926 25 C -0.059 4.059 26 N -0.946 5.946 27 Si 0.958 3.042 28 H -0.267 1.267 29 H -0.298 1.298 30 H -0.291 1.291 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.038 0.962 44 H 0.077 0.923 45 H 0.055 0.945 46 H 0.094 0.906 47 H 0.051 0.949 48 H 0.077 0.923 49 H 0.023 0.977 50 H 0.000 1.000 51 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.327 19.173 5.413 21.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 N -0.083 5.083 4 O 0.033 5.967 5 C -0.034 4.034 6 C -0.135 4.135 7 C -0.270 4.270 8 C 0.374 3.626 9 O -0.412 6.412 10 N -0.320 5.320 11 C -0.012 4.012 12 C -0.163 4.163 13 C -0.156 4.156 14 C -0.158 4.158 15 C 0.048 3.952 16 H 0.075 0.925 17 C 0.055 3.945 18 H 0.070 0.930 19 C -0.142 4.142 20 C -0.177 4.177 21 C 0.057 3.943 22 N -0.340 5.340 23 C -0.339 4.339 24 H 0.092 0.908 25 C -0.252 4.252 26 N -0.595 5.595 27 Si 0.788 3.212 28 H -0.191 1.191 29 H -0.226 1.226 30 H -0.218 1.218 31 H 0.119 0.881 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.136 0.864 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.118 0.882 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.057 0.943 44 H 0.096 0.904 45 H 0.073 0.927 46 H 0.112 0.888 47 H 0.070 0.930 48 H 0.096 0.904 49 H 0.041 0.959 50 H 0.018 0.982 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 7.958 20.006 4.932 22.088 hybrid contribution -1.250 -1.822 0.171 2.216 sum 6.707 18.184 5.103 20.042 Atomic orbital electron populations 1.20288 0.84256 1.04208 1.04766 1.25041 0.99345 0.86408 1.00495 1.73596 0.89564 1.23701 1.21414 1.84499 1.21103 1.23029 1.68096 1.25113 0.98070 0.83153 0.97044 1.20656 0.87853 0.99223 1.05806 1.21921 0.93788 0.94686 1.16653 1.17164 0.77627 0.84056 0.83787 1.90811 1.50488 1.66532 1.33322 1.48181 1.69655 1.07962 1.06214 1.21874 0.99290 0.96665 0.83395 1.21877 0.97329 0.95836 1.01247 1.21577 1.02124 0.95703 0.96176 1.22083 0.96009 1.02345 0.95331 1.21778 0.97042 0.77814 0.98530 0.92492 1.21765 0.95050 0.85430 0.92251 0.92964 1.22835 0.95294 0.97441 0.98668 1.22898 0.99665 0.97170 0.97989 1.21084 0.89621 0.91234 0.92327 1.45097 1.16331 1.03992 1.68531 1.19189 0.89661 0.92378 1.32685 0.90825 1.25568 1.00637 0.96539 1.02471 1.70141 1.34266 1.00399 1.54696 0.85299 0.80428 0.77989 0.77527 1.19093 1.22604 1.21765 0.88075 0.88932 0.90910 0.87743 0.86378 0.88888 0.89725 0.89471 0.88164 0.92240 0.91688 0.91668 0.94311 0.90426 0.92669 0.88775 0.93006 0.90394 0.95857 0.98179 0.94612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.54 10.49 71.23 0.75 -0.79 16 2 C 0.05 1.17 7.37 45.15 0.33 1.50 16 3 N -0.37 -9.09 12.01 -44.77 -0.54 -9.62 16 4 O 0.09 2.00 11.06 76.94 0.85 2.85 16 5 C 0.03 0.59 7.55 25.48 0.19 0.78 16 6 C -0.08 -0.96 10.33 71.24 0.74 -0.22 16 7 C -0.26 -6.49 4.31 -18.75 -0.08 -6.58 16 8 C 0.59 17.52 7.12 86.65 0.62 18.14 16 9 O -0.53 -19.85 9.92 -4.05 -0.04 -19.89 16 10 N -0.59 -16.55 2.97 -798.91 -2.37 -18.92 16 11 C 0.11 2.23 6.31 86.36 0.55 2.78 16 12 C -0.12 -2.52 6.08 30.67 0.19 -2.34 16 13 C -0.12 -3.15 5.88 30.62 0.18 -2.97 16 14 C -0.12 -4.40 3.80 30.67 0.12 -4.29 16 15 C 0.15 5.48 2.70 44.98 0.12 5.60 16 16 H 0.06 2.12 7.77 -2.39 -0.02 2.10 16 17 C 0.16 6.87 2.34 45.25 0.11 6.98 16 18 H 0.05 2.52 5.79 -13.85 -0.08 2.44 16 19 C -0.10 -4.00 5.41 31.78 0.17 -3.82 16 20 C -0.14 -5.65 7.09 31.99 0.23 -5.42 16 21 C 0.18 9.31 5.37 86.85 0.47 9.78 16 22 N -0.61 -31.46 3.10 -667.17 -2.07 -33.53 16 23 C -0.21 -11.39 6.77 84.03 0.57 -10.83 16 24 H 0.07 3.94 6.40 -2.91 -0.02 3.92 16 25 C -0.06 -3.29 5.46 84.86 0.46 -2.82 16 26 N -0.95 -56.48 10.72 21.65 0.23 -56.25 16 27 Si 0.96 45.33 29.55 68.60 2.03 47.36 16 28 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 29 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 30 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 31 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.12 0.76 8.14 -2.39 -0.02 0.75 16 36 H 0.09 1.22 8.11 -2.38 -0.02 1.20 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.09 1.60 6.22 -2.39 -0.01 1.58 16 39 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 43 H 0.04 1.54 7.28 -2.38 -0.02 1.52 16 44 H 0.08 3.54 5.64 -2.39 -0.01 3.53 16 45 H 0.05 1.94 7.61 -2.39 -0.02 1.93 16 46 H 0.09 3.52 5.58 -10.12 -0.06 3.46 16 47 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 49 H 0.02 1.33 7.18 -2.39 -0.02 1.31 16 50 H 0.00 0.01 7.98 -2.39 -0.02 -0.01 16 51 H 0.24 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -69.52 386.61 4.61 -64.91 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.82 Total: 17.61 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 5.70 Total: 5.48 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -4.75 Total: -118.32 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: 0.81 Total: -17.03 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -69.52 4.61 -64.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025202320.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.003 kcal (2) G-P(sol) polarization free energy of solvation -69.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds