Wall clock time and date at job start Wed Apr 1 2020 04:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30006 * 127.33660 * 2 1 4 4 O 1.20661 * 112.30256 * 179.97438 * 3 2 1 5 5 C 1.33492 * 113.15775 * 359.75329 * 4 3 2 6 6 C 1.50701 * 126.83036 * 180.30508 * 5 4 3 7 7 C 1.37360 * 106.34136 * 0.38820 * 5 4 3 8 8 C 1.47397 * 128.56775 * 179.90680 * 7 5 4 9 9 O 1.21604 * 120.00223 * 243.25777 * 8 7 5 10 10 N 1.34778 * 119.99463 * 63.26155 * 8 7 5 11 11 C 1.46921 * 120.63159 * 5.00127 * 10 8 7 12 12 C 1.53192 * 108.77576 * 233.58507 * 11 10 8 13 13 C 1.53042 * 109.31566 * 305.36780 * 12 11 10 14 14 C 1.53042 * 109.53563 * 61.35855 * 13 12 11 15 15 C 1.46928 * 120.62835 * 184.97992 * 10 8 7 16 16 H 1.08997 * 109.70115 * 246.27289 * 15 10 8 17 17 C 1.53001 * 109.58691 * 6.62522 * 15 10 8 18 18 H 1.09008 * 109.87353 * 309.57962 * 17 15 10 19 19 C 1.54320 * 109.88188 * 188.40482 * 17 15 10 20 20 C 1.55157 * 102.93930 * 218.38817 * 19 17 15 21 21 C 1.54905 * 101.58345 * 35.50081 * 20 19 17 22 22 N 1.47022 * 109.88497 * 70.59102 * 17 15 10 23 23 C 1.36938 * 125.64916 * 298.32579 * 22 17 15 24 24 H 1.08002 * 119.99939 * 50.56910 * 23 22 17 25 25 C 1.38813 * 120.00017 * 230.56862 * 23 22 17 26 26 N 1.31613 * 119.99966 * 196.95091 * 25 23 22 27 27 Si 1.86799 * 119.99651 * 16.94977 * 25 23 22 28 28 H 1.48498 * 109.47176 * 95.65818 * 27 25 23 29 29 H 1.48505 * 109.46898 * 215.65671 * 27 25 23 30 30 H 1.48494 * 109.47471 * 335.65506 * 27 25 23 31 31 H 1.09000 * 109.47268 * 269.99943 * 1 2 3 32 32 H 1.08998 * 109.47237 * 30.00240 * 1 2 3 33 33 H 1.09001 * 109.46886 * 150.00175 * 1 2 3 34 34 H 1.08998 * 109.46816 * 277.48698 * 6 5 4 35 35 H 1.08995 * 109.47217 * 37.48843 * 6 5 4 36 36 H 1.08996 * 109.46823 * 157.48856 * 6 5 4 37 37 H 1.09001 * 109.58780 * 113.79977 * 11 10 8 38 38 H 1.08999 * 109.70685 * 353.44013 * 11 10 8 39 39 H 1.08996 * 109.50070 * 185.41368 * 12 11 10 40 40 H 1.09005 * 109.52245 * 65.33121 * 12 11 10 41 41 H 1.09000 * 109.45479 * 301.34399 * 13 12 11 42 42 H 1.08997 * 109.44994 * 181.37751 * 13 12 11 43 43 H 1.09000 * 109.49286 * 178.68350 * 14 13 12 44 44 H 1.09005 * 109.52222 * 58.61343 * 14 13 12 45 45 H 1.08999 * 110.72213 * 336.75169 * 19 17 15 46 46 H 1.08995 * 110.72308 * 100.02679 * 19 17 15 47 47 H 1.09000 * 111.00820 * 277.42432 * 20 19 17 48 48 H 1.09002 * 111.00436 * 153.57657 * 20 19 17 49 49 H 1.09004 * 110.36691 * 204.14851 * 21 20 19 50 50 H 1.09003 * 110.45887 * 81.87373 * 21 20 19 51 51 H 0.97000 * 120.00202 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0337 0.0000 4 8 3.4607 0.7207 0.0005 5 6 3.6494 -0.6008 0.0062 6 6 4.9712 -1.3247 0.0148 7 6 2.3991 -1.1697 0.0008 8 6 2.0400 -2.5993 0.0017 9 8 1.4372 -3.0754 -0.9410 10 7 2.3797 -3.3786 1.0475 11 6 3.0102 -2.7975 2.2406 12 6 4.3084 -3.5568 2.5316 13 6 4.0053 -5.0525 2.6463 14 6 3.4342 -5.5620 1.3210 15 6 2.1261 -4.8255 1.0163 16 1 1.3782 -5.0837 1.7660 17 6 1.6219 -5.2281 -0.3710 18 1 0.7987 -4.5786 -0.6690 19 6 1.1545 -6.6987 -0.3532 20 6 1.6297 -7.2310 -1.7310 21 6 2.9645 -6.4671 -1.9160 22 7 2.7156 -5.1294 -1.3486 23 6 3.3907 -3.9844 -1.6780 24 1 3.8031 -3.3581 -0.9007 25 6 3.5451 -3.6288 -3.0109 26 7 4.4534 -2.7403 -3.3539 27 14 2.4637 -4.4115 -4.3175 28 1 1.3054 -3.5253 -4.5974 29 1 3.2514 -4.6043 -5.5616 30 1 1.9745 -5.7270 -3.8325 31 1 -0.3634 0.0000 1.0276 32 1 -0.3633 0.8899 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 5.3587 -1.3854 -1.0021 35 1 5.6787 -0.7817 0.6414 36 1 4.8320 -2.3304 0.4114 37 1 2.3351 -2.8884 3.0916 38 1 3.2341 -1.7457 2.0625 39 1 4.7368 -3.1995 3.4680 40 1 5.0173 -3.3905 1.7204 41 1 3.2780 -5.2155 3.4417 42 1 4.9236 -5.5922 2.8776 43 1 3.2404 -6.6320 1.3959 44 1 4.1508 -5.3773 0.5206 45 1 1.6344 -7.2461 0.4581 46 1 0.0693 -6.7575 -0.2705 47 1 0.9193 -6.9721 -2.5160 48 1 1.7971 -8.3076 -1.6973 49 1 3.2138 -6.3899 -2.9743 50 1 3.7674 -6.9660 -1.3733 51 1 4.5610 -2.4915 -4.2853 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025202323.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:56 Heat of formation + Delta-G solvation = 99.067641 kcal Electronic energy + Delta-G solvation = -35186.827444 eV Core-core repulsion = 31092.276560 eV Total energy + Delta-G solvation = -4094.550885 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.29438 -40.22962 -37.11899 -36.59948 -34.02386 -33.27350 -32.37896 -32.04055 -31.02303 -29.71519 -28.39055 -27.83251 -27.04410 -25.02786 -23.95142 -23.57747 -22.40832 -20.58486 -20.44018 -19.66670 -19.49529 -18.39011 -17.27365 -17.00505 -16.55848 -16.00665 -15.47019 -15.23883 -14.44282 -14.38082 -14.20395 -13.76358 -13.67287 -13.32260 -13.16859 -13.03310 -12.92025 -12.78998 -12.56461 -12.41333 -12.36600 -12.18618 -12.09586 -11.98379 -11.78933 -11.13351 -11.05918 -11.01772 -10.82581 -10.60557 -10.53348 -10.50010 -10.35743 -10.23343 -10.15970 -9.83962 -9.59856 -9.42361 -9.25337 -8.72511 -8.25840 -8.00599 -7.76438 -6.18009 -5.81848 -3.30322 1.92486 2.40531 3.37557 3.52149 3.54072 3.65152 3.70090 3.77947 4.56370 4.75275 4.80809 5.02684 5.10925 5.16321 5.25235 5.39775 5.40338 5.52910 5.59509 5.62332 5.65581 5.66791 5.68424 5.73276 5.78520 5.83200 5.89719 5.92230 5.94138 6.05425 6.09593 6.11806 6.19710 6.20474 6.26982 6.34075 6.39942 6.42811 6.47809 6.50707 6.59319 6.61447 6.77570 6.92268 6.99333 7.08116 7.18964 7.53992 8.18966 8.27346 8.54255 8.74282 9.07557 9.21723 9.86439 10.55193 11.30440 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010105 B = 0.006852 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.211628 B = 4085.602542 C = 5233.190837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.046 3.954 3 N -0.371 5.371 4 O 0.082 5.918 5 C 0.028 3.972 6 C -0.085 4.085 7 C -0.228 4.228 8 C 0.600 3.400 9 O -0.454 6.454 10 N -0.604 5.604 11 C 0.111 3.889 12 C -0.138 4.138 13 C -0.116 4.116 14 C -0.126 4.126 15 C 0.151 3.849 16 H 0.053 0.947 17 C 0.127 3.873 18 H 0.100 0.900 19 C -0.132 4.132 20 C -0.133 4.133 21 C 0.123 3.877 22 N -0.588 5.588 23 C -0.216 4.216 24 H 0.081 0.919 25 C 0.045 3.955 26 N -0.910 5.910 27 Si 0.873 3.127 28 H -0.296 1.296 29 H -0.309 1.309 30 H -0.247 1.247 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.115 0.885 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.091 0.909 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.061 0.939 48 H 0.055 0.945 49 H 0.045 0.955 50 H 0.018 0.982 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.500 -2.146 13.132 13.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.116 4.116 3 N -0.080 5.080 4 O 0.022 5.978 5 C -0.035 4.035 6 C -0.142 4.142 7 C -0.235 4.235 8 C 0.387 3.613 9 O -0.325 6.325 10 N -0.340 5.340 11 C -0.013 4.013 12 C -0.176 4.176 13 C -0.154 4.154 14 C -0.164 4.164 15 C 0.046 3.954 16 H 0.070 0.930 17 C 0.021 3.979 18 H 0.117 0.883 19 C -0.171 4.171 20 C -0.171 4.171 21 C -0.001 4.001 22 N -0.314 5.314 23 C -0.344 4.344 24 H 0.098 0.902 25 C -0.156 4.156 26 N -0.552 5.552 27 Si 0.703 3.297 28 H -0.223 1.223 29 H -0.237 1.237 30 H -0.172 1.172 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.133 0.867 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.110 0.890 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.074 0.926 49 H 0.063 0.937 50 H 0.036 0.964 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.895 -0.913 12.418 12.784 hybrid contribution -0.440 -1.039 -0.946 1.473 sum -3.334 -1.953 11.472 12.105 Atomic orbital electron populations 1.20126 0.85945 1.04065 1.02806 1.24617 0.98205 0.87324 1.01451 1.73516 0.89381 1.23726 1.21347 1.84433 1.21294 1.23422 1.68685 1.24698 0.98043 0.82891 0.97855 1.20770 0.88402 0.98783 1.06202 1.22094 0.91933 0.95945 1.13561 1.16329 0.80754 0.82522 0.81712 1.90738 1.38067 1.70858 1.32845 1.47641 1.62689 1.07526 1.16149 1.21562 0.93909 0.97769 0.88023 1.22025 0.97772 0.96103 1.01699 1.21505 1.00279 0.95427 0.98161 1.21924 0.98718 0.98479 0.97291 1.21735 0.95558 0.78494 0.99638 0.92952 1.22145 0.94776 0.92907 0.88026 0.88294 1.22709 0.99397 0.97836 0.97155 1.22725 0.99145 0.98158 0.97118 1.21958 0.93367 0.87243 0.97550 1.44478 1.36837 1.03009 1.47037 1.18392 1.25055 0.99574 0.91422 0.90234 1.25626 0.96447 0.95438 0.98041 1.69731 1.33311 1.34901 1.17246 0.87051 0.81420 0.80821 0.80378 1.22333 1.23682 1.17184 0.90528 0.90683 0.89535 0.86708 0.90983 0.88106 0.92502 0.90644 0.91692 0.90767 0.92864 0.92500 0.92212 0.89050 0.92282 0.92504 0.92002 0.92621 0.93667 0.96372 0.93253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 10.49 36.00 0.38 -0.68 16 2 C 0.05 0.85 7.59 -79.77 -0.61 0.24 16 3 N -0.37 -7.01 12.01 34.78 0.42 -6.59 16 4 O 0.08 1.53 11.06 18.65 0.21 1.73 16 5 C 0.03 0.52 6.38 -34.63 -0.22 0.30 16 6 C -0.08 -1.43 9.02 36.01 0.32 -1.11 16 7 C -0.23 -4.47 4.87 -102.89 -0.50 -4.97 16 8 C 0.60 12.16 4.32 -12.53 -0.05 12.11 16 9 O -0.45 -10.81 10.39 5.27 0.05 -10.76 16 10 N -0.60 -10.27 2.55 -166.50 -0.43 -10.70 16 11 C 0.11 1.53 5.49 -3.71 -0.02 1.51 16 12 C -0.14 -1.70 5.92 -26.61 -0.16 -1.86 16 13 C -0.12 -1.43 5.88 -26.69 -0.16 -1.59 16 14 C -0.13 -1.92 4.96 -26.62 -0.13 -2.05 16 15 C 0.15 2.48 2.59 -67.60 -0.17 2.31 16 16 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 17 C 0.13 2.45 2.32 -66.95 -0.16 2.29 16 18 H 0.10 2.21 5.30 -55.21 -0.29 1.91 16 19 C -0.13 -2.14 6.32 -24.90 -0.16 -2.30 16 20 C -0.13 -2.34 6.88 -24.59 -0.17 -2.51 16 21 C 0.12 2.56 5.98 -2.53 -0.02 2.55 16 22 N -0.59 -13.03 1.13 -162.57 -0.18 -13.21 16 23 C -0.22 -5.46 5.92 -15.06 -0.09 -5.55 16 24 H 0.08 2.00 3.47 -52.49 -0.18 1.81 16 25 C 0.04 1.24 5.46 -17.43 -0.10 1.15 16 26 N -0.91 -26.29 13.97 55.49 0.78 -25.51 16 27 Si 0.87 22.85 26.75 -169.99 -4.55 18.30 16 28 H -0.30 -8.27 7.11 56.52 0.40 -7.87 16 29 H -0.31 -8.28 7.11 56.52 0.40 -7.87 16 30 H -0.25 -6.01 3.98 56.52 0.23 -5.79 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.11 2.31 8.14 -51.93 -0.42 1.89 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.10 1.74 3.21 -51.93 -0.17 1.58 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 1.07 5.18 -51.93 -0.27 0.80 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 1.04 5.78 -51.93 -0.30 0.74 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.86 6.78 -51.93 -0.35 0.50 16 44 H 0.09 1.72 6.79 -51.93 -0.35 1.37 16 45 H 0.06 0.86 6.43 -51.93 -0.33 0.52 16 46 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.06 1.17 7.34 -51.93 -0.38 0.78 16 48 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 49 H 0.05 1.03 4.73 -51.93 -0.25 0.79 16 50 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 365.64 15.07 5.51 5.51 Total: -1.00 -30.71 365.64 -7.88 -38.58 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -7.68 Total: 2.81 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -2.00 Total: -0.17 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 0.58 Total: -56.01 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.26 Total: -9.03 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.55 Total: 18.30 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.71 -7.88 -38.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025202323.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.652 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds