Wall clock time and date at job start Wed Apr 1 2020 04:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30006 * 127.33660 * 2 1 4 4 O 1.20661 * 112.30256 * 179.97438 * 3 2 1 5 5 C 1.33492 * 113.15775 * 359.75329 * 4 3 2 6 6 C 1.50701 * 126.83036 * 180.30508 * 5 4 3 7 7 C 1.37360 * 106.34136 * 0.38820 * 5 4 3 8 8 C 1.47397 * 128.56775 * 179.90680 * 7 5 4 9 9 O 1.21604 * 120.00223 * 243.25777 * 8 7 5 10 10 N 1.34778 * 119.99463 * 63.26155 * 8 7 5 11 11 C 1.46921 * 120.63159 * 5.00127 * 10 8 7 12 12 C 1.53192 * 108.77576 * 233.58507 * 11 10 8 13 13 C 1.53042 * 109.31566 * 305.36780 * 12 11 10 14 14 C 1.53042 * 109.53563 * 61.35855 * 13 12 11 15 15 C 1.46928 * 120.62835 * 184.97992 * 10 8 7 16 16 H 1.08997 * 109.70115 * 246.27289 * 15 10 8 17 17 C 1.53001 * 109.58691 * 6.62522 * 15 10 8 18 18 H 1.09008 * 109.87353 * 309.57962 * 17 15 10 19 19 C 1.54320 * 109.88188 * 188.40482 * 17 15 10 20 20 C 1.55157 * 102.93930 * 218.38817 * 19 17 15 21 21 C 1.54905 * 101.58345 * 35.50081 * 20 19 17 22 22 N 1.47022 * 109.88497 * 70.59102 * 17 15 10 23 23 C 1.36938 * 125.64916 * 298.32579 * 22 17 15 24 24 H 1.08002 * 119.99939 * 50.56910 * 23 22 17 25 25 C 1.38813 * 120.00017 * 230.56862 * 23 22 17 26 26 N 1.31613 * 119.99966 * 196.95091 * 25 23 22 27 27 Si 1.86799 * 119.99651 * 16.94977 * 25 23 22 28 28 H 1.48498 * 109.47176 * 95.65818 * 27 25 23 29 29 H 1.48505 * 109.46898 * 215.65671 * 27 25 23 30 30 H 1.48494 * 109.47471 * 335.65506 * 27 25 23 31 31 H 1.09000 * 109.47268 * 269.99943 * 1 2 3 32 32 H 1.08998 * 109.47237 * 30.00240 * 1 2 3 33 33 H 1.09001 * 109.46886 * 150.00175 * 1 2 3 34 34 H 1.08998 * 109.46816 * 277.48698 * 6 5 4 35 35 H 1.08995 * 109.47217 * 37.48843 * 6 5 4 36 36 H 1.08996 * 109.46823 * 157.48856 * 6 5 4 37 37 H 1.09001 * 109.58780 * 113.79977 * 11 10 8 38 38 H 1.08999 * 109.70685 * 353.44013 * 11 10 8 39 39 H 1.08996 * 109.50070 * 185.41368 * 12 11 10 40 40 H 1.09005 * 109.52245 * 65.33121 * 12 11 10 41 41 H 1.09000 * 109.45479 * 301.34399 * 13 12 11 42 42 H 1.08997 * 109.44994 * 181.37751 * 13 12 11 43 43 H 1.09000 * 109.49286 * 178.68350 * 14 13 12 44 44 H 1.09005 * 109.52222 * 58.61343 * 14 13 12 45 45 H 1.08999 * 110.72213 * 336.75169 * 19 17 15 46 46 H 1.08995 * 110.72308 * 100.02679 * 19 17 15 47 47 H 1.09000 * 111.00820 * 277.42432 * 20 19 17 48 48 H 1.09002 * 111.00436 * 153.57657 * 20 19 17 49 49 H 1.09004 * 110.36691 * 204.14851 * 21 20 19 50 50 H 1.09003 * 110.45887 * 81.87373 * 21 20 19 51 51 H 0.97000 * 120.00202 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0337 0.0000 4 8 3.4607 0.7207 0.0005 5 6 3.6494 -0.6008 0.0062 6 6 4.9712 -1.3247 0.0148 7 6 2.3991 -1.1697 0.0008 8 6 2.0400 -2.5993 0.0017 9 8 1.4372 -3.0754 -0.9410 10 7 2.3797 -3.3786 1.0475 11 6 3.0102 -2.7975 2.2406 12 6 4.3084 -3.5568 2.5316 13 6 4.0053 -5.0525 2.6463 14 6 3.4342 -5.5620 1.3210 15 6 2.1261 -4.8255 1.0163 16 1 1.3782 -5.0837 1.7660 17 6 1.6219 -5.2281 -0.3710 18 1 0.7987 -4.5786 -0.6690 19 6 1.1545 -6.6987 -0.3532 20 6 1.6297 -7.2310 -1.7310 21 6 2.9645 -6.4671 -1.9160 22 7 2.7156 -5.1294 -1.3486 23 6 3.3907 -3.9844 -1.6780 24 1 3.8031 -3.3581 -0.9007 25 6 3.5451 -3.6288 -3.0109 26 7 4.4534 -2.7403 -3.3539 27 14 2.4637 -4.4115 -4.3175 28 1 1.3054 -3.5253 -4.5974 29 1 3.2514 -4.6043 -5.5616 30 1 1.9745 -5.7270 -3.8325 31 1 -0.3634 0.0000 1.0276 32 1 -0.3633 0.8899 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 5.3587 -1.3854 -1.0021 35 1 5.6787 -0.7817 0.6414 36 1 4.8320 -2.3304 0.4114 37 1 2.3351 -2.8884 3.0916 38 1 3.2341 -1.7457 2.0625 39 1 4.7368 -3.1995 3.4680 40 1 5.0173 -3.3905 1.7204 41 1 3.2780 -5.2155 3.4417 42 1 4.9236 -5.5922 2.8776 43 1 3.2404 -6.6320 1.3959 44 1 4.1508 -5.3773 0.5206 45 1 1.6344 -7.2461 0.4581 46 1 0.0693 -6.7575 -0.2705 47 1 0.9193 -6.9721 -2.5160 48 1 1.7971 -8.3076 -1.6973 49 1 3.2138 -6.3899 -2.9743 50 1 3.7674 -6.9660 -1.3733 51 1 4.5610 -2.4915 -4.2853 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025202323.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:55 Heat of formation + Delta-G solvation = 81.206181 kcal Electronic energy + Delta-G solvation = -35187.601976 eV Core-core repulsion = 31092.276560 eV Total energy + Delta-G solvation = -4095.325416 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.75722 -41.68140 -38.67352 -37.93839 -35.45970 -34.78199 -34.20748 -33.34834 -32.33852 -31.48710 -29.68539 -29.22067 -28.46029 -26.51760 -25.67110 -24.86120 -23.75458 -22.02568 -21.85408 -21.03824 -20.97974 -19.80433 -18.81453 -18.68548 -18.09647 -17.66663 -16.93036 -16.65537 -16.17933 -15.80244 -15.37187 -15.19719 -15.01005 -14.77272 -14.52705 -14.44796 -14.33340 -14.24464 -14.17601 -13.83134 -13.79328 -13.65097 -13.45596 -13.35667 -13.19429 -12.96829 -12.70275 -12.48889 -12.32810 -12.09187 -12.06126 -11.82546 -11.66724 -11.56872 -11.45032 -11.30346 -11.15856 -11.10805 -10.84078 -10.34181 -10.22496 -9.55737 -9.18524 -8.06489 -7.85610 -5.33449 0.43461 0.94630 1.34687 1.45198 1.53104 1.93705 2.03189 2.41062 2.64200 3.20662 3.39618 3.43098 3.68154 3.80569 4.00217 4.10804 4.13729 4.16449 4.24454 4.28646 4.33403 4.36504 4.44344 4.54924 4.57124 4.58723 4.63933 4.65495 4.68630 4.75076 4.80708 4.86061 4.93052 5.03083 5.06045 5.12028 5.14798 5.16175 5.21506 5.24123 5.28860 5.32652 5.37495 5.49482 5.53854 5.71894 5.85347 6.08172 6.25996 6.54027 6.75814 7.25662 7.26907 7.69220 7.84936 8.59925 9.22718 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010105 B = 0.006852 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.211628 B = 4085.602542 C = 5233.190837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.042 3.958 3 N -0.381 5.381 4 O 0.077 5.923 5 C 0.029 3.971 6 C -0.076 4.076 7 C -0.253 4.253 8 C 0.602 3.398 9 O -0.505 6.505 10 N -0.599 5.599 11 C 0.106 3.894 12 C -0.134 4.134 13 C -0.110 4.110 14 C -0.118 4.118 15 C 0.149 3.851 16 H 0.082 0.918 17 C 0.122 3.878 18 H 0.069 0.931 19 C -0.120 4.120 20 C -0.127 4.127 21 C 0.117 3.883 22 N -0.602 5.602 23 C -0.168 4.168 24 H 0.082 0.918 25 C -0.012 4.012 26 N -0.947 5.947 27 Si 0.897 3.103 28 H -0.329 1.329 29 H -0.323 1.323 30 H -0.220 1.220 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.051 0.949 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.043 0.957 48 H 0.090 0.910 49 H 0.017 0.983 50 H 0.032 0.968 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.145 -4.056 17.336 18.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.120 4.120 3 N -0.091 5.091 4 O 0.019 5.981 5 C -0.034 4.034 6 C -0.133 4.133 7 C -0.261 4.261 8 C 0.389 3.611 9 O -0.380 6.380 10 N -0.334 5.334 11 C -0.017 4.017 12 C -0.172 4.172 13 C -0.147 4.147 14 C -0.156 4.156 15 C 0.045 3.955 16 H 0.099 0.901 17 C 0.017 3.983 18 H 0.086 0.914 19 C -0.158 4.158 20 C -0.165 4.165 21 C -0.008 4.008 22 N -0.328 5.328 23 C -0.298 4.298 24 H 0.099 0.901 25 C -0.207 4.207 26 N -0.594 5.594 27 Si 0.730 3.270 28 H -0.259 1.259 29 H -0.252 1.252 30 H -0.143 1.143 31 H 0.125 0.875 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.131 0.869 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.069 0.931 45 H 0.105 0.895 46 H 0.093 0.907 47 H 0.062 0.938 48 H 0.108 0.892 49 H 0.036 0.964 50 H 0.050 0.950 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.534 -2.881 16.690 17.301 hybrid contribution -0.300 -0.450 -2.095 2.163 sum -3.834 -3.331 14.595 15.453 Atomic orbital electron populations 1.20243 0.83652 1.04010 1.04749 1.25184 0.99739 0.86728 1.00347 1.73496 0.89473 1.23995 1.22173 1.84413 1.21429 1.23391 1.68872 1.24952 0.98423 0.82920 0.97083 1.20713 0.88526 0.99208 1.04847 1.22303 0.92776 0.96274 1.14704 1.16553 0.79807 0.82870 0.81836 1.90756 1.40582 1.71789 1.34871 1.47761 1.61591 1.07762 1.16242 1.21827 0.95098 0.97530 0.87201 1.22014 0.96428 0.96304 1.02486 1.21477 1.01353 0.95023 0.96873 1.21811 0.96797 0.99330 0.97699 1.21781 0.97117 0.78191 0.98421 0.90051 1.22116 0.92854 0.94841 0.88535 0.91431 1.22672 1.00739 0.95346 0.97044 1.22684 0.96543 0.99784 0.97490 1.22030 0.95821 0.87009 0.95896 1.44653 1.37773 1.02767 1.47571 1.18550 1.21674 0.99003 0.90601 0.90117 1.26054 0.98323 0.96896 0.99441 1.69821 1.35741 1.37612 1.16196 0.86654 0.79721 0.81088 0.79491 1.25939 1.25221 1.14317 0.87478 0.89402 0.90808 0.90132 0.86888 0.88336 0.89756 0.91313 0.88484 0.92873 0.90510 0.91221 0.90622 0.93067 0.89456 0.90684 0.93794 0.89186 0.96446 0.95028 0.94601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.99 10.49 71.23 0.75 -1.24 16 2 C 0.04 1.55 7.59 45.16 0.34 1.89 16 3 N -0.38 -14.36 12.01 -44.78 -0.54 -14.90 16 4 O 0.08 2.89 11.06 76.99 0.85 3.74 16 5 C 0.03 1.10 6.38 25.48 0.16 1.26 16 6 C -0.08 -2.59 9.02 71.24 0.64 -1.95 16 7 C -0.25 -9.99 4.87 -18.74 -0.09 -10.08 16 8 C 0.60 24.38 4.32 86.65 0.37 24.75 16 9 O -0.50 -24.62 10.39 -4.04 -0.04 -24.66 16 10 N -0.60 -19.22 2.55 -798.93 -2.04 -21.26 16 11 C 0.11 2.56 5.49 86.36 0.47 3.04 16 12 C -0.13 -2.80 5.92 30.67 0.18 -2.62 16 13 C -0.11 -2.18 5.88 30.62 0.18 -2.00 16 14 C -0.12 -3.16 4.96 30.67 0.15 -3.01 16 15 C 0.15 4.44 2.59 44.97 0.12 4.56 16 16 H 0.08 2.03 8.13 -2.39 -0.02 2.02 16 17 C 0.12 4.47 2.32 45.34 0.11 4.58 16 18 H 0.07 3.00 5.30 -54.43 -0.29 2.72 16 19 C -0.12 -3.42 6.32 31.78 0.20 -3.22 16 20 C -0.13 -4.10 6.88 31.98 0.22 -3.88 16 21 C 0.12 4.72 5.98 86.85 0.52 5.24 16 22 N -0.60 -26.49 1.13 -668.26 -0.75 -27.24 16 23 C -0.17 -8.71 5.92 84.03 0.50 -8.21 16 24 H 0.08 4.14 3.47 -2.91 -0.01 4.13 16 25 C -0.01 -0.72 5.46 84.86 0.46 -0.26 16 26 N -0.95 -57.91 13.97 21.65 0.30 -57.61 16 27 Si 0.90 49.11 26.75 68.60 1.84 50.94 16 28 H -0.33 -19.57 7.11 99.48 0.71 -18.86 16 29 H -0.32 -18.18 7.11 99.48 0.71 -17.47 16 30 H -0.22 -10.86 3.98 99.48 0.40 -10.46 16 31 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 35 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 36 H 0.10 3.39 3.21 -2.39 -0.01 3.38 16 37 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.07 1.78 5.18 -2.39 -0.01 1.77 16 39 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.05 1.36 5.78 -2.38 -0.01 1.34 16 41 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.08 1.79 6.78 -2.39 -0.02 1.77 16 44 H 0.05 1.82 6.79 -2.38 -0.02 1.80 16 45 H 0.09 2.04 6.43 -2.39 -0.02 2.02 16 46 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.04 1.57 7.34 -2.39 -0.02 1.56 16 48 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 49 H 0.02 0.80 4.73 -2.38 -0.01 0.78 16 50 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 51 H 0.24 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -72.63 365.64 5.28 -67.35 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.38 Total: 14.78 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 5.29 Total: 8.85 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -3.03 Total: -121.00 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: 0.81 Total: -20.92 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 1.84 Total: 50.94 kcal Total: -72.63 5.28 -67.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025202323.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.556 kcal (2) G-P(sol) polarization free energy of solvation -72.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds