Wall clock time and date at job start Wed Apr 1 2020 05:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29930 * 125.37897 * 2 1 4 4 C 1.36072 * 108.47945 * 180.11709 * 3 2 1 5 5 C 1.47410 * 126.45040 * 179.85671 * 4 3 2 6 6 O 1.21619 * 120.00255 * 185.94929 * 5 4 3 7 7 N 1.34781 * 120.00242 * 5.95187 * 5 4 3 8 8 C 1.46931 * 120.62920 * 7.33223 * 7 5 4 9 9 C 1.53185 * 108.77326 * 126.41019 * 8 7 5 10 10 C 1.53042 * 109.31421 * 54.63907 * 9 8 7 11 11 C 1.53040 * 109.53409 * 298.62852 * 10 9 8 12 12 C 1.46923 * 120.63020 * 187.35136 * 7 5 4 13 13 H 1.08998 * 109.58426 * 113.80482 * 12 7 5 14 14 C 1.53002 * 109.70684 * 353.44529 * 12 7 5 15 15 H 1.09000 * 109.87251 * 312.92257 * 14 12 7 16 16 C 1.54320 * 109.88103 * 73.94005 * 14 12 7 17 17 C 1.55156 * 102.94362 * 141.61101 * 16 14 12 18 18 C 1.54915 * 101.57957 * 324.49775 * 17 16 14 19 19 N 1.47019 * 109.88029 * 191.74718 * 14 12 7 20 20 C 1.36942 * 125.65245 * 61.62341 * 19 14 12 21 21 H 1.08004 * 119.99801 * 18.36134 * 20 19 14 22 22 C 1.38807 * 120.00143 * 198.36226 * 20 19 14 23 23 N 1.31614 * 120.00029 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99903 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47254 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47172 * 119.99817 * 24 22 20 27 27 H 1.48504 * 109.47167 * 239.99817 * 24 22 20 28 28 C 1.36093 * 107.09645 * 359.59658 * 4 3 2 29 29 C 1.50702 * 126.52022 * 180.20378 * 28 4 3 30 30 O 1.34051 * 125.37709 * 179.66306 * 2 1 3 31 31 H 1.09004 * 109.47339 * 180.31341 * 1 2 3 32 32 H 1.09003 * 109.47078 * 300.31639 * 1 2 3 33 33 H 1.08995 * 109.47139 * 60.31076 * 1 2 3 34 34 H 1.08998 * 109.58278 * 246.19794 * 8 7 5 35 35 H 1.08995 * 109.58300 * 6.48032 * 8 7 5 36 36 H 1.08997 * 109.50456 * 294.68089 * 9 8 7 37 37 H 1.09009 * 109.49304 * 174.58479 * 9 8 7 38 38 H 1.09004 * 109.45853 * 178.61129 * 10 9 8 39 39 H 1.09001 * 109.46317 * 58.65215 * 10 9 8 40 40 H 1.09007 * 109.49705 * 181.31929 * 11 10 9 41 41 H 1.09001 * 109.50202 * 301.37965 * 11 10 9 42 42 H 1.09003 * 110.71706 * 259.97367 * 16 14 12 43 43 H 1.09000 * 110.72209 * 23.06659 * 16 14 12 44 44 H 1.09004 * 111.00451 * 82.57175 * 17 16 14 45 45 H 1.08998 * 111.00626 * 206.42070 * 17 16 14 46 46 H 1.08997 * 110.36187 * 155.84939 * 18 17 16 47 47 H 1.09003 * 110.36426 * 278.05908 * 18 17 16 48 48 H 0.97004 * 119.99994 * 180.02562 * 23 22 20 49 49 H 1.08998 * 109.47060 * 90.00666 * 29 28 4 50 50 H 1.09003 * 109.46944 * 210.00383 * 29 28 4 51 51 H 1.08997 * 109.47220 * 329.99904 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 -0.0026 5 6 4.7439 1.5438 -0.0065 6 8 5.8568 1.0662 -0.1178 7 7 4.5919 2.8776 0.1132 8 6 3.2745 3.4574 0.4084 9 6 3.3988 4.3635 1.6373 10 6 4.5004 5.3977 1.3942 11 6 5.8369 4.6821 1.1848 12 6 5.7403 3.7794 -0.0493 13 1 5.6007 4.3920 -0.9400 14 6 7.0248 2.9596 -0.1868 15 1 7.0574 2.1899 0.5843 16 6 7.0832 2.3060 -1.5836 17 6 8.5845 2.4203 -1.9583 18 6 8.9594 3.7847 -1.3276 19 7 8.1956 3.8408 -0.0679 20 6 8.5224 4.5900 1.0308 21 1 8.0915 4.3543 1.9927 22 6 9.4073 5.6524 0.9083 23 7 9.9327 5.9393 -0.2639 24 14 9.8525 6.6747 2.4069 25 1 9.1319 6.1511 3.5952 26 1 11.3168 6.5975 2.6416 27 1 9.4622 8.0887 2.1752 28 6 3.5659 -0.6971 0.0049 29 6 4.7801 -1.5897 0.0097 30 8 2.2831 -1.0930 0.0064 31 1 -0.3634 -1.0277 0.0056 32 1 -0.3633 0.5188 0.8872 33 1 -0.3633 0.5090 -0.8927 34 1 2.9338 4.0436 -0.4450 35 1 2.5610 2.6588 0.6113 36 1 3.6515 3.7610 2.5097 37 1 2.4515 4.8747 1.8096 38 1 4.5742 6.0593 2.2574 39 1 4.2593 5.9837 0.5073 40 1 6.6251 5.4200 1.0350 41 1 6.0670 4.0769 2.0616 42 1 6.7766 1.2612 -1.5336 43 1 6.4631 2.8549 -2.2924 44 1 9.1616 1.6112 -1.5106 45 1 8.7168 2.4403 -3.0400 46 1 10.0294 3.8275 -1.1247 47 1 8.6661 4.6011 -1.9877 48 1 10.5514 6.6815 -0.3494 49 1 5.0729 -1.7993 1.0384 50 1 4.5456 -2.5248 -0.4990 51 1 5.5999 -1.0908 -0.5071 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025285029.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:36 Heat of formation + Delta-G solvation = 54.943310 kcal Electronic energy + Delta-G solvation = -33335.206518 eV Core-core repulsion = 29238.742259 eV Total energy + Delta-G solvation = -4096.464259 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.55745 -40.24892 -37.20673 -36.67604 -35.05019 -33.22704 -32.60314 -32.16204 -31.12397 -30.25125 -28.98204 -27.33547 -26.13268 -24.61701 -24.33517 -23.21255 -22.46193 -21.48930 -20.52743 -19.66676 -19.27096 -19.09233 -17.18461 -17.16629 -16.59993 -15.67590 -15.59560 -15.06848 -14.87074 -14.37677 -14.28291 -13.94647 -13.86438 -13.76039 -13.69747 -13.40950 -12.97877 -12.96170 -12.88110 -12.75184 -12.48832 -12.28677 -12.07655 -11.84531 -11.55561 -11.48602 -11.35932 -11.02673 -10.85674 -10.80393 -10.67984 -10.50402 -10.24987 -9.99429 -9.94413 -9.67879 -9.58859 -9.34780 -9.24659 -8.80414 -8.69435 -8.30626 -7.90293 -6.53308 -5.66844 -2.99571 1.07295 1.94398 2.35457 3.29958 3.42310 3.49251 3.50076 3.50635 3.77772 4.53001 4.56376 4.67047 4.87275 5.03021 5.15641 5.22067 5.24575 5.31549 5.39310 5.42365 5.45474 5.53126 5.65820 5.72360 5.77448 5.80288 5.88350 5.93586 5.98538 6.02813 6.14504 6.20949 6.26294 6.34044 6.43971 6.46789 6.52026 6.67620 6.72179 6.78628 6.89609 7.00888 7.04903 7.21344 7.39231 7.44296 7.63875 7.67676 7.79633 7.89892 7.91416 8.38595 8.62283 9.30726 9.92771 10.66658 11.45440 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015565 B = 0.003740 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.505642 B = 7484.075683 C = 8604.791264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.183 3.817 3 N -0.455 5.455 4 C -0.062 4.062 5 C 0.580 3.420 6 O -0.507 6.507 7 N -0.584 5.584 8 C 0.082 3.918 9 C -0.131 4.131 10 C -0.124 4.124 11 C -0.128 4.128 12 C 0.139 3.861 13 H 0.060 0.940 14 C 0.167 3.833 15 H 0.071 0.929 16 C -0.120 4.120 17 C -0.150 4.150 18 C 0.176 3.824 19 N -0.597 5.597 20 C -0.217 4.217 21 H 0.076 0.924 22 C -0.006 4.006 23 N -0.913 5.913 24 Si 0.899 3.101 25 H -0.279 1.279 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.031 3.969 29 C -0.076 4.076 30 O -0.200 6.200 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.130 0.870 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.118 0.882 41 H 0.054 0.946 42 H 0.092 0.908 43 H 0.040 0.960 44 H 0.055 0.945 45 H 0.049 0.951 46 H 0.059 0.941 47 H 0.023 0.977 48 H 0.251 0.749 49 H 0.089 0.911 50 H 0.076 0.924 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.082 -12.399 -0.321 22.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.025 4.025 3 N -0.187 5.187 4 C -0.182 4.182 5 C 0.367 3.633 6 O -0.384 6.384 7 N -0.315 5.315 8 C -0.041 4.041 9 C -0.169 4.169 10 C -0.162 4.162 11 C -0.166 4.166 12 C 0.035 3.965 13 H 0.078 0.922 14 C 0.060 3.940 15 H 0.088 0.912 16 C -0.158 4.158 17 C -0.189 4.189 18 C 0.050 3.950 19 N -0.322 5.322 20 C -0.346 4.346 21 H 0.094 0.906 22 C -0.203 4.203 23 N -0.559 5.559 24 Si 0.730 3.270 25 H -0.204 1.204 26 H -0.219 1.219 27 H -0.218 1.218 28 C -0.025 4.025 29 C -0.132 4.132 30 O -0.088 6.088 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.074 0.926 35 H 0.147 0.853 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.136 0.864 41 H 0.073 0.927 42 H 0.110 0.890 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.041 0.959 48 H 0.061 0.939 49 H 0.108 0.892 50 H 0.095 0.905 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -18.570 -11.855 -0.331 22.034 hybrid contribution 0.217 0.346 0.707 0.817 sum -18.352 -11.509 0.376 21.666 Atomic orbital electron populations 1.20271 0.81152 1.04716 1.05171 1.26343 0.96476 0.78705 1.00944 1.70586 1.01259 1.28590 1.18237 1.21868 0.92103 0.92430 1.11790 1.16850 0.85796 0.81993 0.78644 1.90783 1.22765 1.75347 1.49553 1.48074 1.10463 1.04827 1.68173 1.22507 0.85452 0.99428 0.96757 1.21908 0.98945 0.97882 0.98189 1.21649 0.96029 0.97507 1.01011 1.22350 0.97044 1.00171 0.96986 1.22280 0.85387 0.91228 0.97614 0.92221 1.21575 0.84703 0.90928 0.96785 0.91196 1.23041 0.95754 1.01339 0.95620 1.23011 0.96680 1.00596 0.98601 1.21310 0.96684 0.90390 0.86571 1.44737 1.22345 1.51793 1.13321 1.19019 1.22671 1.05818 0.87123 0.90644 1.24945 1.00854 0.98060 0.96415 1.69963 1.33680 1.30614 1.21672 0.86228 0.77977 0.80434 0.82372 1.20368 1.21850 1.21777 1.23706 0.83592 0.94603 1.00563 1.20616 0.90439 0.97562 1.04625 1.84301 1.16607 1.37883 1.69986 0.89432 0.88422 0.88410 0.92592 0.85308 0.92297 0.91850 0.92513 0.92578 0.86384 0.92678 0.88990 0.94083 0.92640 0.93212 0.92295 0.95868 0.93880 0.89220 0.90489 0.86461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.29 10.51 36.01 0.38 0.08 16 2 C 0.18 1.93 8.30 -13.08 -0.11 1.82 16 3 N -0.46 -6.02 7.81 -7.66 -0.06 -6.08 16 4 C -0.06 -0.92 6.68 -83.02 -0.55 -1.48 16 5 C 0.58 10.05 7.27 -12.52 -0.09 9.96 16 6 O -0.51 -9.44 7.49 5.26 0.04 -9.40 16 7 N -0.58 -10.22 2.97 -166.48 -0.49 -10.72 16 8 C 0.08 1.22 6.11 -3.71 -0.02 1.19 16 9 C -0.13 -1.87 6.08 -26.61 -0.16 -2.03 16 10 C -0.12 -2.04 5.88 -26.69 -0.16 -2.20 16 11 C -0.13 -2.58 3.82 -26.61 -0.10 -2.68 16 12 C 0.14 2.80 2.64 -67.60 -0.18 2.62 16 13 H 0.06 1.29 7.85 -51.93 -0.41 0.88 16 14 C 0.17 3.72 2.31 -66.96 -0.15 3.57 16 15 H 0.07 1.69 5.98 -51.70 -0.31 1.38 16 16 C -0.12 -2.46 5.31 -24.90 -0.13 -2.59 16 17 C -0.15 -3.16 7.09 -24.58 -0.17 -3.34 16 18 C 0.18 4.45 5.37 -2.53 -0.01 4.44 16 19 N -0.60 -15.37 3.10 -162.57 -0.50 -15.87 16 20 C -0.22 -5.90 6.80 -15.06 -0.10 -6.01 16 21 H 0.08 2.02 6.47 -52.48 -0.34 1.68 16 22 C -0.01 -0.16 5.46 -17.43 -0.10 -0.25 16 23 N -0.91 -26.77 10.73 55.49 0.60 -26.17 16 24 Si 0.90 21.98 29.55 -169.99 -5.02 16.95 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 C 0.03 0.40 7.44 -35.08 -0.26 0.14 16 29 C -0.08 -0.79 9.95 36.01 0.36 -0.43 16 30 O -0.20 -2.31 10.73 6.52 0.07 -2.24 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.13 1.83 4.09 -61.19 -0.25 1.58 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.12 2.79 5.52 -51.93 -0.29 2.50 16 41 H 0.05 1.17 7.47 -51.93 -0.39 0.78 16 42 H 0.09 1.82 5.40 -53.67 -0.29 1.53 16 43 H 0.04 0.84 7.66 -51.93 -0.40 0.44 16 44 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.06 1.64 7.20 -51.93 -0.37 1.27 16 47 H 0.02 0.64 7.97 -51.93 -0.41 0.22 16 48 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 49 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 50 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.12 1.40 6.37 -51.93 -0.33 1.07 16 LS Contribution 378.72 15.07 5.71 5.71 Total: -1.00 -31.57 378.72 -9.24 -40.81 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -8.00 Total: 4.20 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -1.57 Total: 2.82 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -0.46 Total: -58.85 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.11 Total: -11.64 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.57 -9.24 -40.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025285029.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.751 kcal (2) G-P(sol) polarization free energy of solvation -31.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds