Wall clock time and date at job start Wed Apr 1 2020 05:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29930 * 125.37897 * 2 1 4 4 C 1.36072 * 108.47945 * 180.11709 * 3 2 1 5 5 C 1.47410 * 126.45040 * 179.85671 * 4 3 2 6 6 O 1.21619 * 120.00255 * 185.94929 * 5 4 3 7 7 N 1.34781 * 120.00242 * 5.95187 * 5 4 3 8 8 C 1.46931 * 120.62920 * 7.33223 * 7 5 4 9 9 C 1.53185 * 108.77326 * 126.41019 * 8 7 5 10 10 C 1.53042 * 109.31421 * 54.63907 * 9 8 7 11 11 C 1.53040 * 109.53409 * 298.62852 * 10 9 8 12 12 C 1.46923 * 120.63020 * 187.35136 * 7 5 4 13 13 H 1.08998 * 109.58426 * 113.80482 * 12 7 5 14 14 C 1.53002 * 109.70684 * 353.44529 * 12 7 5 15 15 H 1.09000 * 109.87251 * 312.92257 * 14 12 7 16 16 C 1.54320 * 109.88103 * 73.94005 * 14 12 7 17 17 C 1.55156 * 102.94362 * 141.61101 * 16 14 12 18 18 C 1.54915 * 101.57957 * 324.49775 * 17 16 14 19 19 N 1.47019 * 109.88029 * 191.74718 * 14 12 7 20 20 C 1.36942 * 125.65245 * 61.62341 * 19 14 12 21 21 H 1.08004 * 119.99801 * 18.36134 * 20 19 14 22 22 C 1.38807 * 120.00143 * 198.36226 * 20 19 14 23 23 N 1.31614 * 120.00029 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99903 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47254 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47172 * 119.99817 * 24 22 20 27 27 H 1.48504 * 109.47167 * 239.99817 * 24 22 20 28 28 C 1.36093 * 107.09645 * 359.59658 * 4 3 2 29 29 C 1.50702 * 126.52022 * 180.20378 * 28 4 3 30 30 O 1.34051 * 125.37709 * 179.66306 * 2 1 3 31 31 H 1.09004 * 109.47339 * 180.31341 * 1 2 3 32 32 H 1.09003 * 109.47078 * 300.31639 * 1 2 3 33 33 H 1.08995 * 109.47139 * 60.31076 * 1 2 3 34 34 H 1.08998 * 109.58278 * 246.19794 * 8 7 5 35 35 H 1.08995 * 109.58300 * 6.48032 * 8 7 5 36 36 H 1.08997 * 109.50456 * 294.68089 * 9 8 7 37 37 H 1.09009 * 109.49304 * 174.58479 * 9 8 7 38 38 H 1.09004 * 109.45853 * 178.61129 * 10 9 8 39 39 H 1.09001 * 109.46317 * 58.65215 * 10 9 8 40 40 H 1.09007 * 109.49705 * 181.31929 * 11 10 9 41 41 H 1.09001 * 109.50202 * 301.37965 * 11 10 9 42 42 H 1.09003 * 110.71706 * 259.97367 * 16 14 12 43 43 H 1.09000 * 110.72209 * 23.06659 * 16 14 12 44 44 H 1.09004 * 111.00451 * 82.57175 * 17 16 14 45 45 H 1.08998 * 111.00626 * 206.42070 * 17 16 14 46 46 H 1.08997 * 110.36187 * 155.84939 * 18 17 16 47 47 H 1.09003 * 110.36426 * 278.05908 * 18 17 16 48 48 H 0.97004 * 119.99994 * 180.02562 * 23 22 20 49 49 H 1.08998 * 109.47060 * 90.00666 * 29 28 4 50 50 H 1.09003 * 109.46944 * 210.00383 * 29 28 4 51 51 H 1.08997 * 109.47220 * 329.99904 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 -0.0026 5 6 4.7439 1.5438 -0.0065 6 8 5.8568 1.0662 -0.1178 7 7 4.5919 2.8776 0.1132 8 6 3.2745 3.4574 0.4084 9 6 3.3988 4.3635 1.6373 10 6 4.5004 5.3977 1.3942 11 6 5.8369 4.6821 1.1848 12 6 5.7403 3.7794 -0.0493 13 1 5.6007 4.3920 -0.9400 14 6 7.0248 2.9596 -0.1868 15 1 7.0574 2.1899 0.5843 16 6 7.0832 2.3060 -1.5836 17 6 8.5845 2.4203 -1.9583 18 6 8.9594 3.7847 -1.3276 19 7 8.1956 3.8408 -0.0679 20 6 8.5224 4.5900 1.0308 21 1 8.0915 4.3543 1.9927 22 6 9.4073 5.6524 0.9083 23 7 9.9327 5.9393 -0.2639 24 14 9.8525 6.6747 2.4069 25 1 9.1319 6.1511 3.5952 26 1 11.3168 6.5975 2.6416 27 1 9.4622 8.0887 2.1752 28 6 3.5659 -0.6971 0.0049 29 6 4.7801 -1.5897 0.0097 30 8 2.2831 -1.0930 0.0064 31 1 -0.3634 -1.0277 0.0056 32 1 -0.3633 0.5188 0.8872 33 1 -0.3633 0.5090 -0.8927 34 1 2.9338 4.0436 -0.4450 35 1 2.5610 2.6588 0.6113 36 1 3.6515 3.7610 2.5097 37 1 2.4515 4.8747 1.8096 38 1 4.5742 6.0593 2.2574 39 1 4.2593 5.9837 0.5073 40 1 6.6251 5.4200 1.0350 41 1 6.0670 4.0769 2.0616 42 1 6.7766 1.2612 -1.5336 43 1 6.4631 2.8549 -2.2924 44 1 9.1616 1.6112 -1.5106 45 1 8.7168 2.4403 -3.0400 46 1 10.0294 3.8275 -1.1247 47 1 8.6661 4.6011 -1.9877 48 1 10.5514 6.6815 -0.3494 49 1 5.0729 -1.7993 1.0384 50 1 4.5456 -2.5248 -0.4990 51 1 5.5999 -1.0908 -0.5071 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025285029.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:35 Heat of formation + Delta-G solvation = 35.262639 kcal Electronic energy + Delta-G solvation = -33336.059936 eV Core-core repulsion = 29238.742259 eV Total energy + Delta-G solvation = -4097.317677 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.47791 -41.71529 -38.84053 -38.19150 -36.05180 -34.58285 -34.01435 -33.66022 -32.67378 -31.00118 -30.84824 -28.86211 -27.31777 -26.58952 -25.66203 -24.42212 -23.71539 -22.67783 -22.08495 -21.26536 -20.97262 -20.38370 -18.91096 -18.07468 -17.96022 -17.20657 -17.03069 -16.53820 -16.38695 -15.91423 -15.68247 -15.38220 -15.11377 -15.03516 -14.53368 -14.45096 -14.31286 -14.15797 -13.96513 -13.90164 -13.64229 -13.53299 -13.50766 -13.33919 -13.12608 -13.03434 -12.79080 -12.71248 -12.54688 -12.36659 -12.18506 -11.97146 -11.95470 -11.78090 -11.70211 -11.44022 -11.25502 -10.90147 -10.78647 -10.55928 -10.16614 -9.72230 -9.34891 -8.62130 -7.81136 -5.16301 0.08783 0.98545 1.44595 1.45498 1.50580 1.55452 2.00835 2.26125 2.52524 2.90995 3.34221 3.58989 3.65544 3.79461 3.94102 4.06651 4.08146 4.14621 4.19202 4.25128 4.33086 4.39265 4.42048 4.48365 4.58234 4.61333 4.68067 4.70196 4.71781 4.76928 4.85586 4.90128 4.95008 4.99448 5.04229 5.08606 5.10420 5.17633 5.18855 5.30763 5.33126 5.41490 5.47539 5.54597 5.59651 5.66442 5.74887 5.79148 5.93999 6.27921 6.42997 6.61775 7.14681 7.25015 7.84744 8.56174 9.30930 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015565 B = 0.003740 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.505642 B = 7484.075683 C = 8604.791264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.198 3.802 3 N -0.480 5.480 4 C -0.092 4.092 5 C 0.576 3.424 6 O -0.529 6.529 7 N -0.588 5.588 8 C 0.081 3.919 9 C -0.122 4.122 10 C -0.119 4.119 11 C -0.119 4.119 12 C 0.149 3.851 13 H 0.043 0.957 14 C 0.168 3.832 15 H 0.054 0.946 16 C -0.107 4.107 17 C -0.137 4.137 18 C 0.182 3.818 19 N -0.614 5.614 20 C -0.212 4.212 21 H 0.074 0.926 22 C -0.061 4.061 23 N -0.946 5.946 24 Si 0.962 3.038 25 H -0.266 1.266 26 H -0.295 1.295 27 H -0.291 1.291 28 C 0.039 3.961 29 C -0.075 4.075 30 O -0.198 6.198 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.060 0.940 35 H 0.144 0.856 36 H 0.052 0.948 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.080 0.920 41 H 0.038 0.962 42 H 0.106 0.894 43 H 0.040 0.960 44 H 0.060 0.940 45 H 0.075 0.925 46 H 0.026 0.974 47 H -0.005 1.005 48 H 0.245 0.755 49 H 0.098 0.902 50 H 0.104 0.896 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.541 -14.036 0.298 26.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.010 4.010 3 N -0.210 5.210 4 C -0.211 4.211 5 C 0.365 3.635 6 O -0.408 6.408 7 N -0.320 5.320 8 C -0.041 4.041 9 C -0.160 4.160 10 C -0.157 4.157 11 C -0.157 4.157 12 C 0.045 3.955 13 H 0.061 0.939 14 C 0.063 3.937 15 H 0.072 0.928 16 C -0.145 4.145 17 C -0.175 4.175 18 C 0.057 3.943 19 N -0.339 5.339 20 C -0.342 4.342 21 H 0.092 0.908 22 C -0.254 4.254 23 N -0.595 5.595 24 Si 0.791 3.209 25 H -0.191 1.191 26 H -0.223 1.223 27 H -0.218 1.218 28 C -0.018 4.018 29 C -0.131 4.131 30 O -0.086 6.086 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.078 0.922 35 H 0.160 0.840 36 H 0.071 0.929 37 H 0.116 0.884 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.057 0.943 42 H 0.124 0.876 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.044 0.956 47 H 0.013 0.987 48 H 0.054 0.946 49 H 0.117 0.883 50 H 0.122 0.878 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -22.076 -13.507 0.301 25.882 hybrid contribution 1.161 0.736 0.516 1.468 sum -20.915 -12.771 0.817 24.520 Atomic orbital electron populations 1.20629 0.77337 1.06737 1.06588 1.27427 0.98055 0.77692 0.97845 1.70445 1.00659 1.29815 1.20116 1.21479 0.92059 0.92806 1.14712 1.17186 0.86590 0.81974 0.77737 1.90730 1.23934 1.75665 1.50517 1.48040 1.10496 1.04849 1.68567 1.22713 0.84198 1.00006 0.97169 1.21866 0.99507 0.97097 0.97541 1.21597 0.94534 0.97971 1.01615 1.22088 0.98346 0.99130 0.96184 1.21784 0.85752 0.91105 0.96893 0.93887 1.21569 0.84678 0.90096 0.97405 0.92828 1.22969 0.95193 1.01996 0.94306 1.22902 0.96973 0.97778 0.99855 1.21091 0.94712 0.92040 0.86448 1.45001 1.24032 1.51837 1.13053 1.19199 1.21764 1.05594 0.87607 0.90784 1.25631 1.01454 0.99367 0.98943 1.70149 1.34677 1.31124 1.23555 0.85248 0.77230 0.78696 0.79760 1.19080 1.22250 1.21813 1.24000 0.84640 0.94189 0.98942 1.20664 0.89048 0.98115 1.05297 1.84352 1.16079 1.38175 1.69974 0.87155 0.86761 0.86938 0.92156 0.83955 0.92892 0.88403 0.91506 0.92284 0.90218 0.94281 0.87601 0.94114 0.92173 0.90675 0.95553 0.98675 0.94552 0.88316 0.87753 0.88208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 71.24 0.75 0.40 16 2 C 0.20 3.53 8.30 88.39 0.73 4.27 16 3 N -0.48 -11.58 7.81 -293.04 -2.29 -13.87 16 4 C -0.09 -2.62 6.68 40.40 0.27 -2.35 16 5 C 0.58 19.82 7.27 86.66 0.63 20.45 16 6 O -0.53 -19.85 7.49 -4.09 -0.03 -19.88 16 7 N -0.59 -20.49 2.97 -798.88 -2.37 -22.86 16 8 C 0.08 2.28 6.11 86.36 0.53 2.81 16 9 C -0.12 -3.22 6.08 30.67 0.19 -3.04 16 10 C -0.12 -3.83 5.88 30.62 0.18 -3.65 16 11 C -0.12 -4.94 3.82 30.67 0.12 -4.83 16 12 C 0.15 6.19 2.64 44.98 0.12 6.31 16 13 H 0.04 1.92 7.85 -2.39 -0.02 1.90 16 14 C 0.17 7.74 2.31 45.34 0.10 7.84 16 15 H 0.05 2.68 5.98 -3.74 -0.02 2.66 16 16 C -0.11 -4.43 5.31 31.78 0.17 -4.26 16 17 C -0.14 -5.80 7.09 31.99 0.23 -5.57 16 18 C 0.18 9.69 5.37 86.86 0.47 10.15 16 19 N -0.61 -33.00 3.10 -668.26 -2.07 -35.08 16 20 C -0.21 -12.00 6.80 84.03 0.57 -11.43 16 21 H 0.07 4.12 6.47 -2.91 -0.02 4.10 16 22 C -0.06 -3.50 5.46 84.86 0.46 -3.04 16 23 N -0.95 -58.12 10.73 21.65 0.23 -57.89 16 24 Si 0.96 46.65 29.55 68.60 2.03 48.68 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 26 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 27 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 28 C 0.04 0.92 7.44 25.19 0.19 1.10 16 29 C -0.08 -1.42 9.95 71.24 0.71 -0.72 16 30 O -0.20 -3.98 10.73 0.40 0.00 -3.97 16 31 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.14 3.74 4.09 -20.67 -0.08 3.66 16 36 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 38 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.08 3.93 5.52 -2.38 -0.01 3.92 16 41 H 0.04 1.70 7.47 -2.39 -0.02 1.68 16 42 H 0.11 4.16 5.40 -34.99 -0.19 3.97 16 43 H 0.04 1.66 7.66 -2.39 -0.02 1.65 16 44 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 45 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 46 H 0.03 1.54 7.20 -2.39 -0.02 1.52 16 47 H 0.00 -0.28 7.97 -2.39 -0.02 -0.29 16 48 H 0.25 14.67 8.31 -92.71 -0.77 13.89 16 49 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.10 2.31 6.37 -2.39 -0.02 2.29 16 Total: -1.00 -72.38 378.72 2.59 -69.80 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.68 Total: 20.62 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 6.41 Total: 14.46 kcal Atomic # 7 Polarization: -123.20 SS G_CDS: -6.51 Total: -129.71 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.03 Total: -23.85 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -72.38 2.59 -69.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025285029.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.059 kcal (2) G-P(sol) polarization free energy of solvation -72.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds