Wall clock time and date at job start Wed Apr 1 2020 05:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.29941 * 125.37651 * 2 1 4 4 C 1.36069 * 108.47622 * 179.97438 * 3 2 1 5 5 C 1.47426 * 126.44565 * 179.97438 * 4 3 2 6 6 O 1.21605 * 119.99786 * 186.45636 * 5 4 3 7 7 N 1.34775 * 119.99911 * 6.46373 * 5 4 3 8 8 C 1.46932 * 120.63178 * 6.08475 * 7 5 4 9 9 C 1.53191 * 108.77343 * 126.39074 * 8 7 5 10 10 C 1.53041 * 109.31236 * 54.63728 * 9 8 7 11 11 C 1.53043 * 109.53819 * 298.63361 * 10 9 8 12 12 C 1.46924 * 120.62922 * 186.08478 * 7 5 4 13 13 H 1.08998 * 109.70328 * 113.75371 * 12 7 5 14 14 C 1.53002 * 109.58674 * 353.39457 * 12 7 5 15 15 H 1.09001 * 109.86833 * 51.82329 * 14 12 7 16 16 C 1.54314 * 110.01133 * 290.72104 * 14 12 7 17 17 C 1.55154 * 102.94084 * 218.31656 * 16 14 12 18 18 C 1.54692 * 101.68019 * 35.33653 * 17 16 14 19 19 N 1.47022 * 109.88264 * 172.83279 * 14 12 7 20 20 C 1.36941 * 125.65002 * 298.48237 * 19 14 12 21 21 H 1.07992 * 120.00226 * 128.64316 * 20 19 14 22 22 C 1.38817 * 119.99624 * 308.64539 * 20 19 14 23 23 N 1.31619 * 119.99725 * 183.84320 * 22 20 19 24 24 Si 1.86799 * 119.99938 * 3.83910 * 22 20 19 25 25 H 1.48500 * 109.47183 * 84.61688 * 24 22 20 26 26 H 1.48497 * 109.47550 * 324.61243 * 24 22 20 27 27 H 1.48506 * 109.46766 * 204.61324 * 24 22 20 28 28 C 1.36089 * 107.10250 * 0.23414 * 4 3 2 29 29 C 1.50701 * 126.52268 * 179.77517 * 28 4 3 30 30 O 1.34054 * 125.38511 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.47428 * 90.00096 * 1 2 3 32 32 H 1.09004 * 109.47129 * 209.99364 * 1 2 3 33 33 H 1.08998 * 109.47321 * 329.99541 * 1 2 3 34 34 H 1.09000 * 109.58249 * 6.60569 * 8 7 5 35 35 H 1.09000 * 109.58271 * 246.17960 * 8 7 5 36 36 H 1.09004 * 109.50147 * 294.68633 * 9 8 7 37 37 H 1.08997 * 109.52429 * 174.60240 * 9 8 7 38 38 H 1.09002 * 109.46322 * 178.60996 * 10 9 8 39 39 H 1.09002 * 109.45055 * 58.64471 * 10 9 8 40 40 H 1.09004 * 109.49771 * 301.41118 * 11 10 9 41 41 H 1.09002 * 109.52700 * 181.33755 * 11 10 9 42 42 H 1.08995 * 110.72327 * 336.68040 * 16 14 12 43 43 H 1.09002 * 110.72412 * 99.95613 * 16 14 12 44 44 H 1.09002 * 111.00439 * 153.57730 * 17 16 14 45 45 H 1.09006 * 111.00569 * 277.42652 * 17 16 14 46 46 H 1.08994 * 110.39508 * 204.36236 * 18 17 16 47 47 H 1.09004 * 110.23389 * 82.10888 * 18 17 16 48 48 H 0.97003 * 119.99613 * 179.97438 * 23 22 20 49 49 H 1.08994 * 109.47497 * 89.99156 * 29 28 4 50 50 H 1.09000 * 109.47103 * 209.99639 * 29 28 4 51 51 H 1.09000 * 109.46974 * 329.99038 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2592 1.0595 0.0000 4 6 3.5611 0.6639 0.0006 5 6 4.7438 1.5440 0.0003 6 8 5.8564 1.0674 -0.1176 7 7 4.5921 2.8768 0.1307 8 6 3.2704 3.4563 0.4069 9 6 3.3731 4.3494 1.6473 10 6 4.4811 5.3836 1.4360 11 6 5.8200 4.6674 1.2443 12 6 5.7451 3.7780 -0.0006 13 1 5.6261 4.4002 -0.8876 14 6 7.0288 2.9542 -0.1204 15 1 6.9188 2.2093 -0.9085 16 6 7.3361 2.2571 1.2216 17 6 8.8811 2.3591 1.3203 18 6 9.1460 3.7383 0.6718 19 7 8.1639 3.8383 -0.4230 20 6 8.2905 4.6207 -1.5397 21 1 8.5214 5.6709 -1.4399 22 6 8.1219 4.0639 -2.8001 23 7 8.3178 4.7974 -3.8752 24 14 7.6172 2.2734 -2.9702 25 1 6.1395 2.1641 -2.8716 26 1 8.2459 1.4767 -1.8862 27 1 8.0649 1.7561 -4.2882 28 6 3.5659 -0.6969 -0.0044 29 6 4.7802 -1.5895 -0.0105 30 8 2.2832 -1.0929 0.0005 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 2.5522 2.6572 0.5904 35 1 2.9471 4.0522 -0.4467 36 1 3.6081 3.7371 2.5180 37 1 2.4239 4.8607 1.8076 38 1 4.5398 6.0362 2.3072 39 1 4.2579 5.9791 0.5508 40 1 6.0320 4.0522 2.1188 41 1 6.6127 5.4048 1.1176 42 1 6.8611 2.7853 2.0482 43 1 7.0194 1.2144 1.1960 44 1 9.2079 2.3451 2.3601 45 1 9.3624 1.5642 0.7505 46 1 10.1607 3.7835 0.2765 47 1 8.9855 4.5340 1.3993 48 1 8.2003 4.4082 -4.7559 49 1 5.0755 -1.8084 1.0156 50 1 4.5445 -2.5200 -0.5271 51 1 5.5987 -1.0858 -0.5246 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025285030.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:39 Heat of formation + Delta-G solvation = 57.943247 kcal Electronic energy + Delta-G solvation = -33952.322272 eV Core-core repulsion = 29855.988100 eV Total energy + Delta-G solvation = -4096.334172 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.55920 -40.42601 -37.41299 -36.77865 -35.06690 -33.21455 -32.52414 -32.36430 -31.12271 -30.24644 -29.77185 -27.57854 -26.25581 -24.65405 -24.02766 -23.44942 -22.64719 -21.53722 -20.88895 -20.03618 -19.65597 -18.63641 -17.36119 -17.17146 -16.55571 -15.70023 -15.43936 -15.34647 -15.08854 -14.72714 -14.42002 -14.09449 -14.04892 -13.71897 -13.57800 -13.32055 -13.28571 -12.96938 -12.91588 -12.87927 -12.86268 -12.62901 -12.33392 -11.92877 -11.83354 -11.46254 -11.33193 -11.27076 -11.01703 -10.83635 -10.73702 -10.57733 -10.46411 -10.29644 -9.95220 -9.80487 -9.67540 -9.60249 -9.25478 -8.80134 -8.72805 -8.37041 -7.93658 -6.33305 -5.86366 -3.53847 1.07077 1.94161 2.35152 3.26625 3.45051 3.52152 3.56064 3.71928 3.77124 4.53153 4.63319 4.64927 4.89308 5.02809 5.10191 5.17869 5.19150 5.22210 5.28609 5.32618 5.37827 5.40195 5.42284 5.53221 5.65036 5.74209 5.76843 5.79298 5.86177 5.92309 5.97828 6.01384 6.09327 6.14352 6.27316 6.35261 6.41382 6.45991 6.48008 6.56889 6.65022 6.72150 6.81739 6.91867 7.07055 7.11003 7.15582 7.39112 7.46538 7.84307 8.23265 8.49673 8.57689 9.03078 9.76314 10.47706 11.22793 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011618 B = 0.004888 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.434238 B = 5726.981389 C = 6367.347925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.184 3.816 3 N -0.455 5.455 4 C -0.063 4.063 5 C 0.582 3.418 6 O -0.511 6.511 7 N -0.583 5.583 8 C 0.077 3.923 9 C -0.129 4.129 10 C -0.122 4.122 11 C -0.122 4.122 12 C 0.136 3.864 13 H 0.082 0.918 14 C 0.140 3.860 15 H 0.085 0.915 16 C -0.127 4.127 17 C -0.138 4.138 18 C 0.132 3.868 19 N -0.607 5.607 20 C -0.254 4.254 21 H 0.074 0.926 22 C 0.045 3.955 23 N -0.908 5.908 24 Si 0.900 3.100 25 H -0.287 1.287 26 H -0.258 1.258 27 H -0.310 1.310 28 C 0.033 3.967 29 C -0.078 4.078 30 O -0.199 6.199 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.134 0.866 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.081 0.919 42 H 0.058 0.942 43 H 0.089 0.911 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.044 0.956 47 H 0.018 0.982 48 H 0.263 0.737 49 H 0.090 0.910 50 H 0.078 0.922 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.891 -10.304 12.303 22.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.023 4.023 3 N -0.186 5.186 4 C -0.183 4.183 5 C 0.369 3.631 6 O -0.389 6.389 7 N -0.314 5.314 8 C -0.046 4.046 9 C -0.167 4.167 10 C -0.160 4.160 11 C -0.160 4.160 12 C 0.032 3.968 13 H 0.100 0.900 14 C 0.036 3.964 15 H 0.101 0.899 16 C -0.164 4.164 17 C -0.176 4.176 18 C 0.007 3.993 19 N -0.334 5.334 20 C -0.382 4.382 21 H 0.091 0.909 22 C -0.157 4.157 23 N -0.548 5.548 24 Si 0.731 3.269 25 H -0.214 1.214 26 H -0.183 1.183 27 H -0.239 1.239 28 C -0.023 4.023 29 C -0.134 4.134 30 O -0.087 6.087 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.151 0.849 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.076 0.924 43 H 0.107 0.893 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.062 0.938 47 H 0.036 0.964 48 H 0.072 0.928 49 H 0.109 0.891 50 H 0.097 0.903 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -15.507 -9.863 11.963 21.929 hybrid contribution -0.347 -1.260 -0.334 1.349 sum -15.855 -11.123 11.630 22.591 Atomic orbital electron populations 1.20284 0.81051 1.05159 1.04845 1.26356 0.96491 0.78678 1.00814 1.70558 1.01172 1.28572 1.18285 1.21804 0.92082 0.92458 1.11923 1.16831 0.85775 0.81918 0.78529 1.90780 1.22747 1.75331 1.50022 1.47961 1.10045 1.04927 1.68460 1.22602 0.85377 0.99752 0.96854 1.21883 0.98906 0.97748 0.98178 1.21574 0.95439 0.97547 1.01399 1.21967 0.96963 0.99021 0.98083 1.22014 0.85438 0.91327 0.97973 0.90036 1.22164 0.85938 0.91236 0.97091 0.89854 1.23106 0.94945 1.01631 0.96725 1.22742 0.97048 0.98970 0.98879 1.21664 0.93837 0.93241 0.90563 1.44771 1.15213 1.51978 1.21484 1.18397 1.46862 0.91416 0.81561 0.90869 1.25733 0.96708 0.97461 0.95758 1.69797 1.50434 1.36909 0.97665 0.86644 0.78539 0.86372 0.75318 1.21405 1.18302 1.23852 1.23685 0.83629 0.94530 1.00453 1.20630 0.90494 0.97710 1.04557 1.84291 1.16527 1.37837 1.70019 0.88813 0.89355 0.87934 0.84914 0.92212 0.92265 0.91464 0.92451 0.91952 0.91691 0.90082 0.92384 0.89345 0.92713 0.92133 0.93753 0.96370 0.92762 0.89139 0.90332 0.86554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.33 10.51 36.00 0.38 0.05 16 2 C 0.18 2.09 8.30 -13.08 -0.11 1.98 16 3 N -0.45 -6.47 7.79 -7.65 -0.06 -6.53 16 4 C -0.06 -1.02 6.68 -83.02 -0.55 -1.58 16 5 C 0.58 11.08 7.29 -12.52 -0.09 10.99 16 6 O -0.51 -10.56 7.61 5.27 0.04 -10.52 16 7 N -0.58 -10.90 2.95 -166.48 -0.49 -11.39 16 8 C 0.08 1.18 6.13 -3.71 -0.02 1.16 16 9 C -0.13 -1.71 6.08 -26.61 -0.16 -1.87 16 10 C -0.12 -1.79 5.88 -26.69 -0.16 -1.95 16 11 C -0.12 -2.18 4.96 -26.61 -0.13 -2.31 16 12 C 0.14 2.85 2.72 -67.60 -0.18 2.67 16 13 H 0.08 1.99 7.78 -51.93 -0.40 1.58 16 14 C 0.14 3.22 1.15 -66.96 -0.08 3.14 16 15 H 0.08 2.13 1.07 -52.14 -0.06 2.08 16 16 C -0.13 -2.50 5.18 -24.90 -0.13 -2.63 16 17 C -0.14 -2.63 7.07 -24.70 -0.17 -2.81 16 18 C 0.13 2.87 7.22 -2.65 -0.02 2.85 16 19 N -0.61 -15.29 2.29 -162.72 -0.37 -15.66 16 20 C -0.25 -7.38 9.95 -15.06 -0.15 -7.53 16 21 H 0.07 2.29 8.06 -52.49 -0.42 1.87 16 22 C 0.05 1.36 5.50 -17.43 -0.10 1.27 16 23 N -0.91 -28.66 13.97 55.49 0.78 -27.88 16 24 Si 0.90 24.83 24.89 -169.99 -4.23 20.60 16 25 H -0.29 -8.01 7.11 56.52 0.40 -7.60 16 26 H -0.26 -7.10 6.57 56.52 0.37 -6.73 16 27 H -0.31 -8.58 7.11 56.52 0.40 -8.18 16 28 C 0.03 0.46 7.44 -35.08 -0.26 0.20 16 29 C -0.08 -0.90 9.95 36.01 0.36 -0.54 16 30 O -0.20 -2.47 10.73 6.52 0.07 -2.40 16 31 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.13 1.94 4.04 -63.56 -0.26 1.68 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 1.12 5.48 -51.93 -0.28 0.84 16 41 H 0.08 1.58 8.02 -51.93 -0.42 1.16 16 42 H 0.06 1.07 5.11 -51.93 -0.27 0.80 16 43 H 0.09 1.76 5.58 -51.88 -0.29 1.47 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 49 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 51 H 0.12 1.62 6.37 -51.93 -0.33 1.29 16 LS Contribution 376.85 15.07 5.68 5.68 Total: -1.00 -34.66 376.85 -7.98 -42.64 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -7.81 Total: 2.39 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -1.58 Total: 3.08 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: -0.15 Total: -61.47 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.11 Total: -12.92 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -4.23 Total: 20.60 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.66 -7.98 -42.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025285030.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.588 kcal (2) G-P(sol) polarization free energy of solvation -34.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds