Wall clock time and date at job start Wed Apr 1 2020 05:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.29941 * 125.37651 * 2 1 4 4 C 1.36069 * 108.47622 * 179.97438 * 3 2 1 5 5 C 1.47426 * 126.44565 * 179.97438 * 4 3 2 6 6 O 1.21605 * 119.99786 * 186.45636 * 5 4 3 7 7 N 1.34775 * 119.99911 * 6.46373 * 5 4 3 8 8 C 1.46932 * 120.63178 * 6.08475 * 7 5 4 9 9 C 1.53191 * 108.77343 * 126.39074 * 8 7 5 10 10 C 1.53041 * 109.31236 * 54.63728 * 9 8 7 11 11 C 1.53043 * 109.53819 * 298.63361 * 10 9 8 12 12 C 1.46924 * 120.62922 * 186.08478 * 7 5 4 13 13 H 1.08998 * 109.70328 * 113.75371 * 12 7 5 14 14 C 1.53002 * 109.58674 * 353.39457 * 12 7 5 15 15 H 1.09001 * 109.86833 * 51.82329 * 14 12 7 16 16 C 1.54314 * 110.01133 * 290.72104 * 14 12 7 17 17 C 1.55154 * 102.94084 * 218.31656 * 16 14 12 18 18 C 1.54692 * 101.68019 * 35.33653 * 17 16 14 19 19 N 1.47022 * 109.88264 * 172.83279 * 14 12 7 20 20 C 1.36941 * 125.65002 * 298.48237 * 19 14 12 21 21 H 1.07992 * 120.00226 * 128.64316 * 20 19 14 22 22 C 1.38817 * 119.99624 * 308.64539 * 20 19 14 23 23 N 1.31619 * 119.99725 * 183.84320 * 22 20 19 24 24 Si 1.86799 * 119.99938 * 3.83910 * 22 20 19 25 25 H 1.48500 * 109.47183 * 84.61688 * 24 22 20 26 26 H 1.48497 * 109.47550 * 324.61243 * 24 22 20 27 27 H 1.48506 * 109.46766 * 204.61324 * 24 22 20 28 28 C 1.36089 * 107.10250 * 0.23414 * 4 3 2 29 29 C 1.50701 * 126.52268 * 179.77517 * 28 4 3 30 30 O 1.34054 * 125.38511 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.47428 * 90.00096 * 1 2 3 32 32 H 1.09004 * 109.47129 * 209.99364 * 1 2 3 33 33 H 1.08998 * 109.47321 * 329.99541 * 1 2 3 34 34 H 1.09000 * 109.58249 * 6.60569 * 8 7 5 35 35 H 1.09000 * 109.58271 * 246.17960 * 8 7 5 36 36 H 1.09004 * 109.50147 * 294.68633 * 9 8 7 37 37 H 1.08997 * 109.52429 * 174.60240 * 9 8 7 38 38 H 1.09002 * 109.46322 * 178.60996 * 10 9 8 39 39 H 1.09002 * 109.45055 * 58.64471 * 10 9 8 40 40 H 1.09004 * 109.49771 * 301.41118 * 11 10 9 41 41 H 1.09002 * 109.52700 * 181.33755 * 11 10 9 42 42 H 1.08995 * 110.72327 * 336.68040 * 16 14 12 43 43 H 1.09002 * 110.72412 * 99.95613 * 16 14 12 44 44 H 1.09002 * 111.00439 * 153.57730 * 17 16 14 45 45 H 1.09006 * 111.00569 * 277.42652 * 17 16 14 46 46 H 1.08994 * 110.39508 * 204.36236 * 18 17 16 47 47 H 1.09004 * 110.23389 * 82.10888 * 18 17 16 48 48 H 0.97003 * 119.99613 * 179.97438 * 23 22 20 49 49 H 1.08994 * 109.47497 * 89.99156 * 29 28 4 50 50 H 1.09000 * 109.47103 * 209.99639 * 29 28 4 51 51 H 1.09000 * 109.46974 * 329.99038 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2592 1.0595 0.0000 4 6 3.5611 0.6639 0.0006 5 6 4.7438 1.5440 0.0003 6 8 5.8564 1.0674 -0.1176 7 7 4.5921 2.8768 0.1307 8 6 3.2704 3.4563 0.4069 9 6 3.3731 4.3494 1.6473 10 6 4.4811 5.3836 1.4360 11 6 5.8200 4.6674 1.2443 12 6 5.7451 3.7780 -0.0006 13 1 5.6261 4.4002 -0.8876 14 6 7.0288 2.9542 -0.1204 15 1 6.9188 2.2093 -0.9085 16 6 7.3361 2.2571 1.2216 17 6 8.8811 2.3591 1.3203 18 6 9.1460 3.7383 0.6718 19 7 8.1639 3.8383 -0.4230 20 6 8.2905 4.6207 -1.5397 21 1 8.5214 5.6709 -1.4399 22 6 8.1219 4.0639 -2.8001 23 7 8.3178 4.7974 -3.8752 24 14 7.6172 2.2734 -2.9702 25 1 6.1395 2.1641 -2.8716 26 1 8.2459 1.4767 -1.8862 27 1 8.0649 1.7561 -4.2882 28 6 3.5659 -0.6969 -0.0044 29 6 4.7802 -1.5895 -0.0105 30 8 2.2832 -1.0929 0.0005 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 2.5522 2.6572 0.5904 35 1 2.9471 4.0522 -0.4467 36 1 3.6081 3.7371 2.5180 37 1 2.4239 4.8607 1.8076 38 1 4.5398 6.0362 2.3072 39 1 4.2579 5.9791 0.5508 40 1 6.0320 4.0522 2.1188 41 1 6.6127 5.4048 1.1176 42 1 6.8611 2.7853 2.0482 43 1 7.0194 1.2144 1.1960 44 1 9.2079 2.3451 2.3601 45 1 9.3624 1.5642 0.7505 46 1 10.1607 3.7835 0.2765 47 1 8.9855 4.5340 1.3993 48 1 8.2003 4.4082 -4.7559 49 1 5.0755 -1.8084 1.0156 50 1 4.5445 -2.5200 -0.5271 51 1 5.5987 -1.0858 -0.5246 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025285030.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:38 Heat of formation + Delta-G solvation = 34.513928 kcal Electronic energy + Delta-G solvation = -33953.338244 eV Core-core repulsion = 29855.988100 eV Total energy + Delta-G solvation = -4097.350144 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.55295 -41.91492 -39.02526 -38.21575 -36.12946 -34.67605 -34.11186 -33.78539 -32.57094 -31.78383 -30.95141 -29.03349 -27.44740 -26.35797 -25.63963 -24.72744 -23.88937 -22.73033 -22.30457 -21.59174 -21.24320 -20.00025 -19.14085 -18.15652 -17.92941 -17.48946 -17.01403 -16.73391 -16.58918 -16.37007 -15.48276 -15.34501 -15.30433 -15.21028 -14.91061 -14.75824 -14.56158 -14.33662 -14.29569 -14.11588 -13.79991 -13.58790 -13.52776 -13.30491 -13.24092 -13.05120 -12.99520 -12.84055 -12.56460 -12.49904 -12.30306 -12.06154 -11.98721 -11.90506 -11.69329 -11.57708 -11.30806 -11.01550 -10.85096 -10.75114 -10.22382 -9.81200 -9.43407 -8.48531 -8.15077 -5.86176 0.00478 0.91152 1.22998 1.25704 1.42355 1.45225 1.93317 2.17281 2.31722 2.84205 3.01834 3.43036 3.54232 3.62688 3.85471 3.90959 3.97845 4.10280 4.12065 4.16597 4.24419 4.29867 4.34838 4.42480 4.47364 4.53857 4.61941 4.66379 4.66854 4.69519 4.77997 4.81797 4.84814 4.95034 4.98765 5.04977 5.06461 5.10306 5.12721 5.16132 5.20300 5.24856 5.31834 5.40427 5.44823 5.50758 5.64525 5.80327 5.96201 6.17192 6.33127 6.53078 6.88481 7.15384 7.50345 8.27876 8.90273 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011618 B = 0.004888 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.434238 B = 5726.981389 C = 6367.347925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.200 3.800 3 N -0.480 5.480 4 C -0.097 4.097 5 C 0.573 3.427 6 O -0.536 6.536 7 N -0.588 5.588 8 C 0.073 3.927 9 C -0.118 4.118 10 C -0.119 4.119 11 C -0.112 4.112 12 C 0.141 3.859 13 H 0.031 0.969 14 C 0.134 3.866 15 H 0.061 0.939 16 C -0.115 4.115 17 C -0.126 4.126 18 C 0.126 3.874 19 N -0.625 5.625 20 C -0.235 4.235 21 H 0.041 0.959 22 C -0.002 4.002 23 N -0.948 5.948 24 Si 0.962 3.038 25 H -0.300 1.300 26 H -0.257 1.257 27 H -0.311 1.311 28 C 0.040 3.960 29 C -0.076 4.076 30 O -0.195 6.195 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.148 0.852 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.051 0.949 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.263 0.737 49 H 0.110 0.890 50 H 0.104 0.896 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.435 -12.414 15.301 26.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.008 4.008 3 N -0.211 5.211 4 C -0.216 4.216 5 C 0.363 3.637 6 O -0.416 6.416 7 N -0.320 5.320 8 C -0.049 4.049 9 C -0.156 4.156 10 C -0.156 4.156 11 C -0.150 4.150 12 C 0.037 3.963 13 H 0.049 0.951 14 C 0.030 3.970 15 H 0.077 0.923 16 C -0.152 4.152 17 C -0.164 4.164 18 C 0.002 3.998 19 N -0.352 5.352 20 C -0.365 4.365 21 H 0.059 0.941 22 C -0.200 4.200 23 N -0.592 5.592 24 Si 0.794 3.206 25 H -0.228 1.228 26 H -0.182 1.182 27 H -0.240 1.240 28 C -0.017 4.017 29 C -0.132 4.132 30 O -0.083 6.083 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.164 0.836 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.067 0.933 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.110 0.890 44 H 0.115 0.885 45 H 0.070 0.930 46 H 0.053 0.947 47 H 0.052 0.948 48 H 0.072 0.928 49 H 0.128 0.872 50 H 0.122 0.878 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.065 -11.969 14.997 26.353 hybrid contribution 0.333 -0.591 -1.240 1.414 sum -17.732 -12.560 13.756 25.718 Atomic orbital electron populations 1.20661 0.77070 1.07169 1.06417 1.27491 0.98118 0.77624 0.97561 1.70428 1.00538 1.29882 1.20253 1.21485 0.92138 0.92959 1.14979 1.17243 0.86598 0.82124 0.77771 1.90741 1.23968 1.75797 1.51059 1.48035 1.10401 1.04897 1.68640 1.22834 0.84063 1.00451 0.97529 1.21841 0.99738 0.96990 0.97041 1.21561 0.94129 0.97963 1.01961 1.21844 0.98290 0.98188 0.96684 1.21621 0.85840 0.91346 0.97522 0.95102 1.22184 0.85958 0.90562 0.98334 0.92259 1.23011 0.95506 1.01589 0.95077 1.22699 0.96390 0.96465 1.00855 1.21817 0.92482 0.95703 0.89829 1.44916 1.17494 1.51560 1.21258 1.18237 1.44612 0.90590 0.83080 0.94150 1.26227 0.97774 1.00275 0.95698 1.69887 1.52970 1.38259 0.98060 0.85663 0.77145 0.83008 0.74767 1.22801 1.18198 1.24043 1.23986 0.84765 0.94071 0.98833 1.20673 0.88827 0.97971 1.05758 1.84341 1.15898 1.38086 1.70006 0.87238 0.86732 0.86476 0.83581 0.93444 0.91457 0.88296 0.89807 0.93295 0.90409 0.92408 0.90695 0.89016 0.88524 0.93040 0.94713 0.94789 0.92783 0.87204 0.87750 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.43 10.51 71.23 0.75 0.32 16 2 C 0.20 3.97 8.30 88.39 0.73 4.70 16 3 N -0.48 -12.86 7.79 -293.03 -2.28 -15.14 16 4 C -0.10 -3.09 6.68 40.41 0.27 -2.82 16 5 C 0.57 21.86 7.29 86.66 0.63 22.49 16 6 O -0.54 -22.29 7.61 -4.05 -0.03 -22.32 16 7 N -0.59 -22.16 2.95 -798.87 -2.36 -24.52 16 8 C 0.07 2.19 6.13 86.36 0.53 2.71 16 9 C -0.12 -2.83 6.08 30.67 0.19 -2.64 16 10 C -0.12 -3.31 5.88 30.62 0.18 -3.13 16 11 C -0.11 -3.95 4.96 30.67 0.15 -3.80 16 12 C 0.14 6.08 2.72 44.97 0.12 6.20 16 13 H 0.03 1.61 7.78 -2.39 -0.02 1.59 16 14 C 0.13 6.22 1.15 45.34 0.05 6.27 16 15 H 0.06 3.11 1.07 -14.00 -0.02 3.10 16 16 C -0.11 -4.36 5.18 31.78 0.16 -4.20 16 17 C -0.13 -4.54 7.07 31.91 0.23 -4.32 16 18 C 0.13 5.41 7.22 86.78 0.63 6.04 16 19 N -0.62 -32.21 2.29 -668.71 -1.53 -33.74 16 20 C -0.24 -14.34 9.95 84.03 0.84 -13.50 16 21 H 0.04 2.70 8.06 -2.91 -0.02 2.68 16 22 C 0.00 -0.14 5.50 84.86 0.47 0.33 16 23 N -0.95 -62.61 13.97 21.65 0.30 -62.30 16 24 Si 0.96 54.31 24.89 68.60 1.71 56.01 16 25 H -0.30 -17.32 7.11 99.48 0.71 -16.61 16 26 H -0.26 -14.28 6.57 99.48 0.65 -13.62 16 27 H -0.31 -17.37 7.11 99.48 0.71 -16.66 16 28 C 0.04 1.05 7.44 25.19 0.19 1.24 16 29 C -0.08 -1.63 9.95 71.24 0.71 -0.93 16 30 O -0.20 -4.30 10.73 0.42 0.00 -4.30 16 31 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.11 0.34 8.14 -2.38 -0.02 0.32 16 33 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.15 4.06 4.04 -25.36 -0.10 3.96 16 35 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.08 2.53 5.48 -2.38 -0.01 2.51 16 41 H 0.06 2.28 8.02 -2.39 -0.02 2.26 16 42 H 0.07 2.57 5.11 -2.39 -0.01 2.56 16 43 H 0.09 3.52 5.58 -9.92 -0.06 3.46 16 44 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 45 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 46 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 48 H 0.26 16.54 8.31 -92.71 -0.77 15.77 16 49 H 0.11 1.91 8.14 -2.39 -0.02 1.90 16 50 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.09 2.49 6.37 -2.39 -0.02 2.48 16 Total: -1.00 -80.54 376.85 3.38 -77.16 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.75 Total: 14.18 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 6.82 Total: 14.98 kcal Atomic # 7 Polarization: -129.83 SS G_CDS: -5.87 Total: -135.71 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: -0.03 Total: -26.62 kcal Atomic # 14 Polarization: 54.31 SS G_CDS: 1.71 Total: 56.01 kcal Total: -80.54 3.38 -77.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025285030.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.674 kcal (2) G-P(sol) polarization free energy of solvation -80.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds