Wall clock time and date at job start Wed Apr 1 2020 05:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29927 * 125.37990 * 2 1 4 4 C 1.36060 * 108.47987 * 180.16711 * 3 2 1 5 5 C 1.47420 * 126.45141 * 179.82552 * 4 3 2 6 6 O 1.21617 * 119.99988 * 173.94911 * 5 4 3 7 7 N 1.34775 * 119.99796 * 353.95321 * 5 4 3 8 8 C 1.46921 * 120.63376 * 5.37069 * 7 5 4 9 9 C 1.53199 * 108.77455 * 233.63342 * 8 7 5 10 10 C 1.53036 * 109.30892 * 305.35935 * 9 8 7 11 11 C 1.53040 * 109.53760 * 61.36831 * 10 9 8 12 12 C 1.46927 * 120.62824 * 185.39113 * 7 5 4 13 13 H 1.09004 * 109.58832 * 246.29711 * 12 7 5 14 14 C 1.52996 * 109.59141 * 6.58212 * 12 7 5 15 15 H 1.09000 * 109.87350 * 314.35196 * 14 12 7 16 16 C 1.54316 * 110.01555 * 193.24901 * 14 12 7 17 17 C 1.55282 * 103.00943 * 218.39474 * 16 14 12 18 18 C 1.54908 * 101.52370 * 35.36104 * 17 16 14 19 19 N 1.47023 * 109.88114 * 75.35944 * 14 12 7 20 20 C 1.36941 * 125.65097 * 298.49507 * 19 14 12 21 21 H 1.07998 * 119.99686 * 354.58340 * 20 19 14 22 22 C 1.38808 * 119.99729 * 174.58551 * 20 19 14 23 23 N 1.31613 * 120.00763 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99657 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47179 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47324 * 119.99808 * 24 22 20 27 27 H 1.48507 * 109.47114 * 239.99631 * 24 22 20 28 28 C 1.36099 * 107.09972 * 359.55872 * 4 3 2 29 29 C 1.50701 * 126.52265 * 180.28348 * 28 4 3 30 30 O 1.34052 * 125.37558 * 179.67965 * 2 1 3 31 31 H 1.09001 * 109.46874 * 180.29492 * 1 2 3 32 32 H 1.08994 * 109.47052 * 300.29711 * 1 2 3 33 33 H 1.09001 * 109.47047 * 60.30277 * 1 2 3 34 34 H 1.09001 * 109.58268 * 353.41696 * 8 7 5 35 35 H 1.08999 * 109.59037 * 113.70309 * 8 7 5 36 36 H 1.09001 * 109.49716 * 65.31378 * 9 8 7 37 37 H 1.09001 * 109.49492 * 185.40799 * 9 8 7 38 38 H 1.09001 * 109.45958 * 181.38696 * 10 9 8 39 39 H 1.08996 * 109.46353 * 301.34503 * 10 9 8 40 40 H 1.09003 * 109.49553 * 178.67627 * 11 10 9 41 41 H 1.09004 * 109.49422 * 58.58648 * 11 10 9 42 42 H 1.08999 * 110.72052 * 336.67819 * 16 14 12 43 43 H 1.08998 * 110.72261 * 99.77835 * 16 14 12 44 44 H 1.09004 * 110.95710 * 277.33527 * 17 16 14 45 45 H 1.09002 * 111.10049 * 153.44882 * 17 16 14 46 46 H 1.09007 * 110.36313 * 204.23344 * 18 17 16 47 47 H 1.08999 * 110.36767 * 82.02690 * 18 17 16 48 48 H 0.96994 * 120.00711 * 180.02562 * 23 22 20 49 49 H 1.08999 * 109.46754 * 90.00520 * 29 28 4 50 50 H 1.09000 * 109.47035 * 210.00022 * 29 28 4 51 51 H 1.09005 * 109.47209 * 330.00699 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2593 1.0593 0.0000 4 6 3.5612 0.6638 -0.0038 5 6 4.7439 1.5438 -0.0087 6 8 5.8573 1.0666 0.0993 7 7 4.5913 2.8771 -0.1328 8 6 3.2512 3.4792 -0.1461 9 6 3.1138 4.3488 -1.3998 10 6 4.2589 5.3631 -1.4402 11 6 5.5964 4.6226 -1.5102 12 6 5.7620 3.7561 -0.2578 13 1 5.8359 4.3938 0.6231 14 6 7.0290 2.9081 -0.3847 15 1 7.0164 2.1096 0.3572 16 6 8.2782 3.7915 -0.1838 17 6 9.2814 3.2198 -1.2221 18 6 8.3357 2.8371 -2.3879 19 7 7.1131 2.3339 -1.7356 20 6 6.2063 1.4737 -2.2951 21 1 5.3863 1.0939 -1.7037 22 6 6.3411 1.0900 -3.6223 23 7 7.3401 1.5532 -4.3431 24 14 5.1037 -0.0828 -4.3857 25 1 4.0837 -0.4546 -3.3724 26 1 4.4397 0.5789 -5.5374 27 1 5.8043 -1.3056 -4.8540 28 6 3.5659 -0.6971 0.0039 29 6 4.7801 -1.5898 0.0094 30 8 2.2831 -1.0930 0.0061 31 1 -0.3633 -1.0277 0.0053 32 1 -0.3633 0.5184 0.8873 33 1 -0.3633 0.5091 -0.8927 34 1 2.4972 2.6922 -0.1628 35 1 3.1180 4.0941 0.7440 36 1 3.1558 3.7170 -2.2871 37 1 2.1606 4.8769 -1.3735 38 1 4.1497 5.9994 -2.3184 39 1 4.2311 5.9782 -0.5408 40 1 6.4103 5.3457 -1.5626 41 1 5.6150 3.9884 -2.3966 42 1 8.0519 4.8350 -0.4029 43 1 8.6656 3.6870 0.8296 44 1 9.7917 2.3408 -0.8282 45 1 9.9987 3.9790 -1.5340 46 1 8.7867 2.0573 -3.0017 47 1 8.1085 3.7132 -2.9953 48 1 7.4341 1.2853 -5.2706 49 1 5.0724 -1.7992 1.0384 50 1 4.5459 -2.5249 -0.4992 51 1 5.6003 -1.0908 -0.5069 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025285032.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:45 Heat of formation + Delta-G solvation = 74.851850 kcal Electronic energy + Delta-G solvation = -34625.771619 eV Core-core repulsion = 30530.170659 eV Total energy + Delta-G solvation = -4095.600960 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.27754 -40.17526 -37.07603 -36.47705 -34.78708 -32.91351 -32.37272 -32.14747 -30.79043 -29.97080 -28.92597 -27.23331 -26.08807 -24.58462 -23.93111 -23.16104 -22.37649 -21.28622 -20.18955 -19.99338 -19.19517 -18.62689 -17.05647 -16.93642 -16.40152 -15.84893 -15.35730 -14.98997 -14.40964 -14.17679 -14.03863 -13.98349 -13.68723 -13.63236 -13.45935 -13.17124 -12.94127 -12.76998 -12.65778 -12.59350 -12.47193 -12.08400 -11.85926 -11.72110 -11.68250 -11.25690 -11.01626 -10.95275 -10.88118 -10.76354 -10.65511 -10.48991 -10.13839 -9.97223 -9.88407 -9.69893 -9.50191 -9.27109 -8.96707 -8.51027 -8.41748 -8.03194 -7.75167 -6.44033 -5.46082 -2.76567 1.40658 2.23926 2.64174 3.44077 3.49271 3.51438 3.52118 3.93051 4.02840 4.65609 4.83399 4.92731 5.15429 5.22164 5.33035 5.42132 5.44809 5.48875 5.53518 5.61440 5.65593 5.70945 5.74965 5.83059 5.87012 5.91506 5.94200 5.97795 6.09465 6.11187 6.16202 6.23967 6.36194 6.41082 6.46318 6.54416 6.57283 6.65806 6.73027 6.77884 6.84899 6.93253 6.94941 7.24077 7.43529 7.64562 7.72407 7.79649 7.89992 8.06750 8.17022 8.56113 8.97207 9.47215 10.10204 10.78391 11.62977 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010264 B = 0.006046 C = 0.005066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.239800 B = 4629.775514 C = 5525.879753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.179 3.821 3 N -0.455 5.455 4 C -0.063 4.063 5 C 0.608 3.392 6 O -0.493 6.493 7 N -0.580 5.580 8 C 0.064 3.936 9 C -0.128 4.128 10 C -0.118 4.118 11 C -0.124 4.124 12 C 0.142 3.858 13 H 0.051 0.949 14 C 0.122 3.878 15 H 0.113 0.887 16 C -0.130 4.130 17 C -0.145 4.145 18 C 0.164 3.836 19 N -0.577 5.577 20 C -0.186 4.186 21 H 0.089 0.911 22 C -0.024 4.024 23 N -0.928 5.928 24 Si 0.890 3.110 25 H -0.286 1.286 26 H -0.296 1.296 27 H -0.294 1.294 28 C 0.038 3.962 29 C -0.077 4.077 30 O -0.201 6.201 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.148 0.852 35 H 0.048 0.952 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.100 0.900 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.050 0.950 46 H 0.088 0.912 47 H 0.011 0.989 48 H 0.244 0.756 49 H 0.088 0.912 50 H 0.074 0.926 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.613 0.821 10.815 15.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.029 4.029 3 N -0.186 5.186 4 C -0.183 4.183 5 C 0.396 3.604 6 O -0.370 6.370 7 N -0.312 5.312 8 C -0.059 4.059 9 C -0.166 4.166 10 C -0.156 4.156 11 C -0.162 4.162 12 C 0.037 3.963 13 H 0.069 0.931 14 C 0.015 3.985 15 H 0.130 0.870 16 C -0.169 4.169 17 C -0.184 4.184 18 C 0.039 3.961 19 N -0.300 5.300 20 C -0.315 4.315 21 H 0.107 0.893 22 C -0.218 4.218 23 N -0.579 5.579 24 Si 0.723 3.277 25 H -0.211 1.211 26 H -0.224 1.224 27 H -0.221 1.221 28 C -0.017 4.017 29 C -0.133 4.133 30 O -0.088 6.088 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.164 0.836 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.106 0.894 47 H 0.029 0.971 48 H 0.055 0.945 49 H 0.106 0.894 50 H 0.093 0.907 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.306 1.037 10.680 14.878 hybrid contribution -0.640 -0.849 -0.831 1.350 sum -10.946 0.188 9.848 14.726 Atomic orbital electron populations 1.20245 0.81334 1.04613 1.04989 1.26295 0.96401 0.78931 1.01245 1.70194 1.01459 1.28205 1.18756 1.21974 0.91989 0.92662 1.11639 1.16473 0.85612 0.81639 0.76676 1.90728 1.21967 1.74369 1.49947 1.47591 1.07371 1.05111 1.71080 1.22838 0.86493 1.00202 0.96339 1.21815 0.97675 0.97851 0.99246 1.21542 0.96168 0.97446 1.00412 1.21892 0.94994 0.98362 1.00949 1.22030 0.86740 0.91527 0.95996 0.93089 1.22437 0.89026 0.94097 0.92923 0.87045 1.22687 0.97348 0.98742 0.98131 1.22993 0.97610 0.99053 0.98726 1.21635 0.85465 0.97900 0.91085 1.44290 1.23995 1.51258 1.10433 1.19644 1.03496 1.15974 0.92389 0.89323 1.24718 0.98724 1.01557 0.96794 1.69892 1.31563 1.48753 1.07705 0.86315 0.80935 0.81171 0.79299 1.21145 1.22351 1.22118 1.23711 0.83407 0.94737 0.99853 1.20655 0.90789 0.97698 1.04186 1.84281 1.16734 1.37754 1.70038 0.89536 0.88544 0.88514 0.83579 0.93347 0.91551 0.92199 0.92825 0.93256 0.92475 0.88129 0.92823 0.92876 0.92602 0.93119 0.89419 0.97128 0.94489 0.89360 0.90732 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.44 10.51 36.01 0.38 -0.06 16 2 C 0.18 2.50 8.30 -13.08 -0.11 2.39 16 3 N -0.45 -7.56 7.67 -7.65 -0.06 -7.62 16 4 C -0.06 -1.20 6.60 -83.02 -0.55 -1.75 16 5 C 0.61 12.62 4.77 -12.52 -0.06 12.56 16 6 O -0.49 -11.07 8.38 5.26 0.04 -11.02 16 7 N -0.58 -11.25 2.83 -166.48 -0.47 -11.72 16 8 C 0.06 1.07 6.33 -3.71 -0.02 1.05 16 9 C -0.13 -2.07 6.08 -26.61 -0.16 -2.23 16 10 C -0.12 -1.91 5.88 -26.69 -0.16 -2.07 16 11 C -0.12 -2.41 4.94 -26.61 -0.13 -2.54 16 12 C 0.14 2.74 2.53 -67.60 -0.17 2.57 16 13 H 0.05 0.91 8.09 -51.93 -0.42 0.49 16 14 C 0.12 2.61 2.32 -66.96 -0.16 2.45 16 15 H 0.11 2.59 4.87 -56.99 -0.28 2.31 16 16 C -0.13 -2.44 6.33 -24.83 -0.16 -2.60 16 17 C -0.15 -2.92 7.10 -24.51 -0.17 -3.10 16 18 C 0.16 4.07 5.67 -2.53 -0.01 4.05 16 19 N -0.58 -14.40 1.92 -162.58 -0.31 -14.71 16 20 C -0.19 -5.06 7.54 -15.06 -0.11 -5.17 16 21 H 0.09 2.37 3.40 -52.49 -0.18 2.20 16 22 C -0.02 -0.69 5.48 -17.43 -0.10 -0.79 16 23 N -0.93 -27.68 10.23 55.49 0.57 -27.11 16 24 Si 0.89 23.07 29.55 -169.99 -5.02 18.04 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 27 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 28 C 0.04 0.67 7.44 -35.08 -0.26 0.41 16 29 C -0.08 -1.20 9.82 36.01 0.35 -0.85 16 30 O -0.20 -3.13 10.73 6.52 0.07 -3.06 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.15 2.46 3.61 -80.60 -0.29 2.17 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 1.07 7.10 -51.93 -0.37 0.71 16 41 H 0.10 2.44 6.39 -51.93 -0.33 2.11 16 42 H 0.05 0.95 6.77 -51.93 -0.35 0.59 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.09 2.47 6.25 -51.92 -0.32 2.14 16 47 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.24 7.21 8.31 -40.82 -0.34 6.87 16 49 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 50 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 51 H 0.12 2.33 6.61 -51.93 -0.34 1.99 16 LS Contribution 375.70 15.07 5.66 5.66 Total: -1.00 -32.43 375.70 -9.06 -41.50 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -7.94 Total: 5.69 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -1.60 Total: 4.35 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: -0.27 Total: -61.16 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.11 Total: -14.08 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.43 -9.06 -41.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025285032.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.349 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds