Wall clock time and date at job start Wed Apr 1 2020 04:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30012 * 127.33273 * 2 1 4 4 O 1.20656 * 112.30205 * 180.31898 * 3 2 1 5 5 C 1.33497 * 113.15518 * 359.68344 * 4 3 2 6 6 C 1.50696 * 126.82794 * 180.02562 * 5 4 3 7 7 C 1.53003 * 117.50127 * 8.72851 * 6 5 4 8 8 C 1.53001 * 117.50232 * 300.06773 * 6 5 4 9 9 C 1.37356 * 106.34003 * 0.02562 * 5 4 3 10 10 C 1.47396 * 128.56326 * 179.97438 * 9 5 4 11 11 O 1.21613 * 120.00269 * 89.99699 * 10 9 5 12 12 N 1.34771 * 120.00026 * 270.27341 * 10 9 5 13 13 C 1.46497 * 120.00467 * 179.72263 * 12 10 9 14 14 H 1.08996 * 109.47203 * 325.00711 * 13 12 10 15 15 C 1.53013 * 109.47092 * 84.99925 * 13 12 10 16 16 C 1.52990 * 109.47705 * 204.99963 * 13 12 10 17 17 H 1.09003 * 109.50130 * 59.93786 * 16 13 12 18 18 C 1.53041 * 109.50177 * 179.97438 * 16 13 12 19 19 C 1.53041 * 109.54207 * 181.31804 * 18 16 13 20 20 C 1.53201 * 109.31241 * 298.63706 * 19 18 16 21 21 N 1.46927 * 108.77211 * 54.63086 * 20 19 18 22 22 C 1.36944 * 120.62791 * 126.41758 * 21 20 19 23 23 H 1.07995 * 120.00149 * 207.67370 * 22 21 20 24 24 C 1.38817 * 119.99710 * 27.66899 * 22 21 20 25 25 N 1.31618 * 120.00193 * 17.36260 * 24 22 21 26 26 Si 1.86804 * 119.99687 * 197.35657 * 24 22 21 27 27 H 1.48503 * 109.46840 * 90.00308 * 26 24 22 28 28 H 1.48501 * 109.47108 * 210.00302 * 26 24 22 29 29 H 1.48496 * 109.47386 * 330.00549 * 26 24 22 30 30 C 1.46920 * 118.74143 * 306.39025 * 21 20 19 31 31 H 1.09000 * 109.47330 * 270.17006 * 1 2 3 32 32 H 1.09003 * 109.47713 * 30.17743 * 1 2 3 33 33 H 1.09001 * 109.46968 * 150.17420 * 1 2 3 34 34 H 1.09007 * 115.54978 * 154.39329 * 6 5 4 35 35 H 1.09002 * 117.49510 * 359.97438 * 7 6 5 36 36 H 1.09002 * 117.50044 * 145.01545 * 7 6 5 37 37 H 1.09001 * 117.49637 * 214.97388 * 8 6 5 38 38 H 1.09000 * 117.49666 * 359.97438 * 8 6 5 39 39 H 0.97010 * 119.99965 * 359.72364 * 12 10 9 40 40 H 1.09000 * 109.47356 * 180.02562 * 15 13 12 41 41 H 1.08997 * 109.46848 * 300.00824 * 15 13 12 42 42 H 1.09002 * 109.46797 * 60.00106 * 15 13 12 43 43 H 1.09000 * 109.46394 * 301.33860 * 18 16 13 44 44 H 1.09001 * 109.45953 * 61.31019 * 18 16 13 45 45 H 1.08997 * 109.49691 * 58.58434 * 19 18 16 46 46 H 1.08992 * 109.49887 * 178.65401 * 19 18 16 47 47 H 1.08999 * 109.58458 * 174.42036 * 20 19 18 48 48 H 1.09000 * 109.58239 * 294.84923 * 20 19 18 49 49 H 0.97001 * 119.99540 * 180.02562 * 25 24 22 50 50 H 1.08995 * 109.58698 * 293.82082 * 30 21 20 51 51 H 1.09006 * 109.58560 * 173.39516 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4607 0.7209 -0.0062 5 6 3.6494 -0.6007 -0.0047 6 6 4.9711 -1.3244 -0.0105 7 6 6.2362 -0.4868 0.1870 8 6 5.9110 -1.0696 -1.1906 9 6 2.3991 -1.1695 0.0031 10 6 2.0401 -2.5991 0.0073 11 8 1.8980 -3.1873 1.0621 12 7 1.8749 -3.2558 -1.1580 13 6 1.5240 -4.6781 -1.1540 14 1 2.0119 -5.1703 -0.3128 15 6 0.0070 -4.8288 -1.0229 16 6 1.9893 -5.3220 -2.4615 17 1 3.0699 -5.2139 -2.5559 18 6 1.6236 -6.8080 -2.4576 19 6 2.1178 -7.4602 -3.7510 20 6 1.4301 -6.7961 -4.9481 21 7 1.6563 -5.3460 -4.8787 22 6 2.1884 -4.6711 -5.9449 23 1 2.7554 -3.7664 -5.7828 24 6 1.9989 -5.1499 -7.2340 25 7 1.0500 -6.0291 -7.4766 26 14 3.0905 -4.5461 -8.6244 27 1 4.2801 -5.4277 -8.7383 28 1 2.3295 -4.5743 -9.8993 29 1 3.5299 -3.1562 -8.3410 30 6 1.3002 -4.6338 -3.6440 31 1 -0.3634 0.0031 1.0276 32 1 -0.3635 0.8884 -0.5166 33 1 -0.3633 -0.8916 -0.5111 34 1 4.9599 -2.3273 0.4165 35 1 6.1123 0.5879 0.3207 36 1 7.0572 -0.9386 0.7436 37 1 6.5184 -1.9047 -1.5397 38 1 5.5731 -0.3787 -1.9630 39 1 1.9883 -2.7866 -1.9995 40 1 -0.2541 -5.8871 -1.0195 41 1 -0.3246 -4.3700 -0.0914 42 1 -0.4810 -4.3365 -1.8642 43 1 2.0929 -7.2953 -1.6030 44 1 0.5412 -6.9154 -2.3876 45 1 3.1969 -7.3315 -3.8340 46 1 1.8781 -8.5233 -3.7369 47 1 1.8506 -7.1877 -5.8744 48 1 0.3601 -7.0010 -4.9147 49 1 0.9179 -6.3639 -8.3774 50 1 0.2196 -4.6623 -3.5044 51 1 1.6350 -3.5985 -3.7099 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025486008.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:50 Heat of formation + Delta-G solvation = 59.910434 kcal Electronic energy + Delta-G solvation = -31725.410925 eV Core-core repulsion = 27629.162056 eV Total energy + Delta-G solvation = -4096.248869 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -45.04077 -39.91520 -38.08683 -37.66395 -35.24058 -34.72820 -33.08447 -32.02857 -30.83125 -30.50239 -28.97650 -28.16285 -25.42116 -25.30036 -23.87235 -23.46952 -22.73729 -22.23045 -20.96034 -20.30028 -19.70093 -18.73015 -18.00771 -17.87778 -16.88283 -16.56804 -16.19755 -15.84132 -14.95116 -14.85454 -14.62926 -14.41474 -13.92835 -13.70832 -13.57297 -13.55590 -13.48690 -13.21790 -13.08437 -12.61604 -12.45087 -12.33771 -12.27512 -11.92200 -11.86698 -11.67013 -11.64605 -11.41555 -11.03807 -10.98175 -10.78727 -10.63837 -10.52232 -10.30110 -10.22034 -10.10543 -10.01904 -9.91630 -9.65353 -9.44379 -9.36366 -9.02295 -8.50449 -6.71827 -5.83586 -3.26226 1.06898 1.74240 2.35247 2.58222 3.20235 3.33804 3.41044 3.41894 3.46374 3.86875 3.99548 4.36708 4.43672 4.50022 4.54691 4.72767 4.99607 5.02139 5.15792 5.19378 5.26835 5.30533 5.33750 5.35529 5.38269 5.42362 5.52772 5.55519 5.63175 5.65990 5.66972 5.75043 5.80355 5.83475 5.95610 6.07471 6.17049 6.19637 6.28742 6.43411 6.53243 6.56625 6.66167 6.72919 6.82372 6.92678 7.36020 7.48293 7.63178 7.74330 8.04106 8.12580 8.39639 9.16161 9.79641 10.36006 11.24498 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009938 B = 0.003262 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.710618 B = 8582.790036 C = 9621.885377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.057 3.943 3 N -0.356 5.356 4 O 0.095 5.905 5 C 0.052 3.948 6 C -0.096 4.096 7 C -0.162 4.162 8 C -0.154 4.154 9 C -0.244 4.244 10 C 0.601 3.399 11 O -0.532 6.532 12 N -0.706 5.706 13 C 0.149 3.851 14 H 0.083 0.917 15 C -0.166 4.166 16 C -0.112 4.112 17 H 0.072 0.928 18 C -0.101 4.101 19 C -0.142 4.142 20 C 0.170 3.830 21 N -0.590 5.590 22 C -0.255 4.255 23 H 0.064 0.936 24 C 0.004 3.996 25 N -0.901 5.901 26 Si 0.901 3.099 27 H -0.287 1.287 28 H -0.291 1.291 29 H -0.279 1.279 30 C 0.152 3.848 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.139 0.861 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.405 0.595 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.046 0.954 44 H 0.060 0.940 45 H 0.053 0.947 46 H 0.049 0.951 47 H 0.086 0.914 48 H 0.017 0.983 49 H 0.254 0.746 50 H 0.025 0.975 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.534 7.322 15.173 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 N -0.063 5.063 4 O 0.034 5.966 5 C -0.012 4.012 6 C -0.115 4.115 7 C -0.199 4.199 8 C -0.191 4.191 9 C -0.251 4.251 10 C 0.384 3.616 11 O -0.409 6.409 12 N -0.357 5.357 13 C 0.045 3.955 14 H 0.102 0.898 15 C -0.224 4.224 16 C -0.133 4.133 17 H 0.091 0.909 18 C -0.139 4.139 19 C -0.182 4.182 20 C 0.044 3.956 21 N -0.313 5.313 22 C -0.384 4.384 23 H 0.082 0.918 24 C -0.194 4.194 25 N -0.545 5.545 26 Si 0.731 3.269 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.205 1.205 30 C 0.025 3.975 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.157 0.843 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.122 0.878 39 H 0.241 0.759 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.104 0.896 48 H 0.035 0.965 49 H 0.064 0.936 50 H 0.043 0.957 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.181 8.146 15.734 18.204 hybrid contribution 0.419 -0.301 -1.152 1.262 sum 4.600 7.845 14.582 17.185 Atomic orbital electron populations 1.20239 0.85045 1.04370 1.03895 1.24735 0.98592 0.86433 1.00746 1.73616 0.89013 1.23237 1.20396 1.84495 1.21575 1.22364 1.68137 1.23519 0.95519 0.83460 0.98668 1.20535 0.84080 0.99549 1.07321 1.23106 0.96696 1.00221 0.99884 1.23174 1.00449 1.03988 0.91499 1.21864 0.92473 0.95529 1.15241 1.16835 0.76726 0.83732 0.84268 1.90808 1.50908 1.67954 1.31181 1.46212 1.69567 1.11724 1.08185 1.21102 0.95744 0.79445 0.99219 0.89850 1.22273 0.95491 1.02686 1.01950 1.21954 1.01153 0.96296 0.93908 0.90917 1.21436 1.00691 0.94008 0.97740 1.22181 1.00791 0.98282 0.96914 1.20795 0.96180 0.82984 0.95629 1.44015 1.73263 1.02875 1.11098 1.19160 1.25832 1.08667 0.84750 0.91785 1.25016 0.97308 0.99838 0.97286 1.70038 1.30274 1.34020 1.20145 0.86321 0.80256 0.78502 0.81869 1.21421 1.21751 1.20465 1.20959 0.95955 0.94268 0.86312 0.89623 0.89806 0.89608 0.84295 0.87657 0.87372 0.87002 0.87792 0.75885 0.91162 0.92818 0.91564 0.93499 0.92131 0.92812 0.93203 0.89565 0.96463 0.93609 0.95735 0.93565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.49 36.00 0.38 -0.39 16 2 C 0.06 0.72 7.59 -79.77 -0.61 0.12 16 3 N -0.36 -4.74 12.01 34.78 0.42 -4.33 16 4 O 0.10 1.19 10.86 18.64 0.20 1.39 16 5 C 0.05 0.61 7.00 -34.63 -0.24 0.37 16 6 C -0.10 -0.90 6.14 -91.77 -0.56 -1.46 16 7 C -0.16 -1.16 10.19 -26.69 -0.27 -1.43 16 8 C -0.15 -1.22 10.24 -26.69 -0.27 -1.50 16 9 C -0.24 -3.20 6.24 -102.90 -0.64 -3.84 16 10 C 0.60 8.48 7.60 -12.53 -0.10 8.39 16 11 O -0.53 -9.07 16.77 5.27 0.09 -8.98 16 12 N -0.71 -9.27 5.00 -54.89 -0.27 -9.55 16 13 C 0.15 2.04 2.41 -67.93 -0.16 1.88 16 14 H 0.08 1.19 7.58 -51.93 -0.39 0.80 16 15 C -0.17 -2.18 8.79 37.16 0.33 -1.85 16 16 C -0.11 -1.75 2.33 -90.50 -0.21 -1.96 16 17 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 18 C -0.10 -1.57 4.78 -26.69 -0.13 -1.69 16 19 C -0.14 -2.58 6.08 -26.61 -0.16 -2.74 16 20 C 0.17 3.87 5.31 -3.71 -0.02 3.85 16 21 N -0.59 -13.90 2.99 -172.32 -0.52 -14.42 16 22 C -0.25 -6.67 9.59 -15.05 -0.14 -6.81 16 23 H 0.06 1.65 7.89 -52.49 -0.41 1.23 16 24 C 0.00 0.12 4.91 -17.43 -0.09 0.03 16 25 N -0.90 -25.40 11.19 55.49 0.62 -24.78 16 26 Si 0.90 21.08 29.59 -169.99 -5.03 16.05 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 30 C 0.15 2.86 5.30 -3.71 -0.02 2.84 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.14 1.31 8.14 -51.92 -0.42 0.89 16 35 H 0.11 0.74 8.02 -51.93 -0.42 0.32 16 36 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.41 5.15 6.96 -40.82 -0.28 4.87 16 40 H 0.07 0.88 6.46 -51.93 -0.34 0.54 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.90 6.32 -51.93 -0.33 0.57 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.93 6.50 -51.93 -0.34 0.59 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.09 2.23 6.04 -51.93 -0.31 1.92 16 48 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 49 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 50 H 0.02 0.48 6.17 -51.93 -0.32 0.16 16 51 H 0.05 0.84 6.52 -51.93 -0.34 0.50 16 LS Contribution 407.32 15.07 6.14 6.14 Total: -1.00 -30.88 407.32 -9.39 -40.26 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -8.11 Total: 4.40 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -2.92 Total: -6.20 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.25 Total: -53.07 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: 0.29 Total: -7.59 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.88 -9.39 -40.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025486008.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.175 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds