Wall clock time and date at job start Wed Apr 1 2020 04:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30012 * 127.33273 * 2 1 4 4 O 1.20656 * 112.30205 * 180.31898 * 3 2 1 5 5 C 1.33497 * 113.15518 * 359.68344 * 4 3 2 6 6 C 1.50696 * 126.82794 * 180.02562 * 5 4 3 7 7 C 1.53003 * 117.50127 * 8.72851 * 6 5 4 8 8 C 1.53001 * 117.50232 * 300.06773 * 6 5 4 9 9 C 1.37356 * 106.34003 * 0.02562 * 5 4 3 10 10 C 1.47396 * 128.56326 * 179.97438 * 9 5 4 11 11 O 1.21613 * 120.00269 * 89.99699 * 10 9 5 12 12 N 1.34771 * 120.00026 * 270.27341 * 10 9 5 13 13 C 1.46497 * 120.00467 * 179.72263 * 12 10 9 14 14 H 1.08996 * 109.47203 * 325.00711 * 13 12 10 15 15 C 1.53013 * 109.47092 * 84.99925 * 13 12 10 16 16 C 1.52990 * 109.47705 * 204.99963 * 13 12 10 17 17 H 1.09003 * 109.50130 * 59.93786 * 16 13 12 18 18 C 1.53041 * 109.50177 * 179.97438 * 16 13 12 19 19 C 1.53041 * 109.54207 * 181.31804 * 18 16 13 20 20 C 1.53201 * 109.31241 * 298.63706 * 19 18 16 21 21 N 1.46927 * 108.77211 * 54.63086 * 20 19 18 22 22 C 1.36944 * 120.62791 * 126.41758 * 21 20 19 23 23 H 1.07995 * 120.00149 * 207.67370 * 22 21 20 24 24 C 1.38817 * 119.99710 * 27.66899 * 22 21 20 25 25 N 1.31618 * 120.00193 * 17.36260 * 24 22 21 26 26 Si 1.86804 * 119.99687 * 197.35657 * 24 22 21 27 27 H 1.48503 * 109.46840 * 90.00308 * 26 24 22 28 28 H 1.48501 * 109.47108 * 210.00302 * 26 24 22 29 29 H 1.48496 * 109.47386 * 330.00549 * 26 24 22 30 30 C 1.46920 * 118.74143 * 306.39025 * 21 20 19 31 31 H 1.09000 * 109.47330 * 270.17006 * 1 2 3 32 32 H 1.09003 * 109.47713 * 30.17743 * 1 2 3 33 33 H 1.09001 * 109.46968 * 150.17420 * 1 2 3 34 34 H 1.09007 * 115.54978 * 154.39329 * 6 5 4 35 35 H 1.09002 * 117.49510 * 359.97438 * 7 6 5 36 36 H 1.09002 * 117.50044 * 145.01545 * 7 6 5 37 37 H 1.09001 * 117.49637 * 214.97388 * 8 6 5 38 38 H 1.09000 * 117.49666 * 359.97438 * 8 6 5 39 39 H 0.97010 * 119.99965 * 359.72364 * 12 10 9 40 40 H 1.09000 * 109.47356 * 180.02562 * 15 13 12 41 41 H 1.08997 * 109.46848 * 300.00824 * 15 13 12 42 42 H 1.09002 * 109.46797 * 60.00106 * 15 13 12 43 43 H 1.09000 * 109.46394 * 301.33860 * 18 16 13 44 44 H 1.09001 * 109.45953 * 61.31019 * 18 16 13 45 45 H 1.08997 * 109.49691 * 58.58434 * 19 18 16 46 46 H 1.08992 * 109.49887 * 178.65401 * 19 18 16 47 47 H 1.08999 * 109.58458 * 174.42036 * 20 19 18 48 48 H 1.09000 * 109.58239 * 294.84923 * 20 19 18 49 49 H 0.97001 * 119.99540 * 180.02562 * 25 24 22 50 50 H 1.08995 * 109.58698 * 293.82082 * 30 21 20 51 51 H 1.09006 * 109.58560 * 173.39516 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4607 0.7209 -0.0062 5 6 3.6494 -0.6007 -0.0047 6 6 4.9711 -1.3244 -0.0105 7 6 6.2362 -0.4868 0.1870 8 6 5.9110 -1.0696 -1.1906 9 6 2.3991 -1.1695 0.0031 10 6 2.0401 -2.5991 0.0073 11 8 1.8980 -3.1873 1.0621 12 7 1.8749 -3.2558 -1.1580 13 6 1.5240 -4.6781 -1.1540 14 1 2.0119 -5.1703 -0.3128 15 6 0.0070 -4.8288 -1.0229 16 6 1.9893 -5.3220 -2.4615 17 1 3.0699 -5.2139 -2.5559 18 6 1.6236 -6.8080 -2.4576 19 6 2.1178 -7.4602 -3.7510 20 6 1.4301 -6.7961 -4.9481 21 7 1.6563 -5.3460 -4.8787 22 6 2.1884 -4.6711 -5.9449 23 1 2.7554 -3.7664 -5.7828 24 6 1.9989 -5.1499 -7.2340 25 7 1.0500 -6.0291 -7.4766 26 14 3.0905 -4.5461 -8.6244 27 1 4.2801 -5.4277 -8.7383 28 1 2.3295 -4.5743 -9.8993 29 1 3.5299 -3.1562 -8.3410 30 6 1.3002 -4.6338 -3.6440 31 1 -0.3634 0.0031 1.0276 32 1 -0.3635 0.8884 -0.5166 33 1 -0.3633 -0.8916 -0.5111 34 1 4.9599 -2.3273 0.4165 35 1 6.1123 0.5879 0.3207 36 1 7.0572 -0.9386 0.7436 37 1 6.5184 -1.9047 -1.5397 38 1 5.5731 -0.3787 -1.9630 39 1 1.9883 -2.7866 -1.9995 40 1 -0.2541 -5.8871 -1.0195 41 1 -0.3246 -4.3700 -0.0914 42 1 -0.4810 -4.3365 -1.8642 43 1 2.0929 -7.2953 -1.6030 44 1 0.5412 -6.9154 -2.3876 45 1 3.1969 -7.3315 -3.8340 46 1 1.8781 -8.5233 -3.7369 47 1 1.8506 -7.1877 -5.8744 48 1 0.3601 -7.0010 -4.9147 49 1 0.9179 -6.3639 -8.3774 50 1 0.2196 -4.6623 -3.5044 51 1 1.6350 -3.5985 -3.7099 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025486008.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:49 Heat of formation + Delta-G solvation = 43.277831 kcal Electronic energy + Delta-G solvation = -31726.132169 eV Core-core repulsion = 27629.162056 eV Total energy + Delta-G solvation = -4096.970112 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.99534 -41.10122 -39.48229 -38.36479 -36.69714 -35.67632 -34.67447 -33.09357 -32.33249 -32.03557 -29.84876 -29.47623 -27.19951 -26.43007 -24.85621 -24.55650 -23.85822 -23.33012 -22.31676 -21.51498 -20.62310 -20.11166 -19.09273 -18.84635 -18.54991 -17.62254 -17.22225 -16.86179 -16.76423 -16.07257 -15.75307 -15.63616 -15.41995 -15.05780 -14.76493 -14.64003 -14.39101 -14.34068 -14.11776 -13.98988 -13.95274 -13.65677 -13.29742 -13.08128 -13.02538 -12.76211 -12.70976 -12.54003 -12.44447 -12.27061 -12.20849 -12.06110 -11.92439 -11.71723 -11.50255 -11.45391 -11.39396 -11.13035 -11.03257 -11.00333 -10.50281 -10.25790 -10.17470 -8.63901 -7.84964 -5.29486 0.14741 0.78161 1.25898 1.47256 1.49169 1.56819 1.65256 2.17611 2.52137 2.78253 3.02226 3.12121 3.29663 3.54053 3.60946 3.69188 3.84396 3.93741 3.95792 4.00282 4.06986 4.14893 4.36875 4.39371 4.42379 4.48174 4.51306 4.53782 4.65996 4.67671 4.71406 4.75015 4.86345 4.89485 4.90754 4.98750 5.02754 5.04835 5.06499 5.16271 5.18781 5.22080 5.31632 5.37212 5.44922 5.51253 5.60071 5.70389 5.82335 6.37321 6.41581 7.01944 7.09826 7.17617 7.89729 8.40596 9.20784 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009938 B = 0.003262 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.710618 B = 8582.790036 C = 9621.885377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.054 3.946 3 N -0.374 5.374 4 O 0.092 5.908 5 C 0.063 3.937 6 C -0.117 4.117 7 C -0.145 4.145 8 C -0.150 4.150 9 C -0.270 4.270 10 C 0.611 3.389 11 O -0.562 6.562 12 N -0.699 5.699 13 C 0.158 3.842 14 H 0.087 0.913 15 C -0.161 4.161 16 C -0.096 4.096 17 H 0.068 0.932 18 C -0.098 4.098 19 C -0.131 4.131 20 C 0.174 3.826 21 N -0.608 5.608 22 C -0.259 4.259 23 H 0.067 0.933 24 C -0.048 4.048 25 N -0.934 5.934 26 Si 0.960 3.040 27 H -0.286 1.286 28 H -0.298 1.298 29 H -0.268 1.268 30 C 0.151 3.849 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.139 0.861 35 H 0.107 0.893 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.099 0.901 39 H 0.408 0.592 40 H 0.079 0.921 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.049 0.951 46 H 0.068 0.932 47 H 0.049 0.951 48 H -0.004 1.004 49 H 0.248 0.752 50 H 0.023 0.977 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.714 7.708 16.525 19.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 N -0.083 5.083 4 O 0.033 5.967 5 C -0.001 4.001 6 C -0.136 4.136 7 C -0.182 4.182 8 C -0.187 4.187 9 C -0.278 4.278 10 C 0.396 3.604 11 O -0.441 6.441 12 N -0.349 5.349 13 C 0.054 3.946 14 H 0.105 0.895 15 C -0.219 4.219 16 C -0.117 4.117 17 H 0.086 0.914 18 C -0.135 4.135 19 C -0.170 4.170 20 C 0.049 3.951 21 N -0.331 5.331 22 C -0.389 4.389 23 H 0.085 0.915 24 C -0.244 4.244 25 N -0.580 5.580 26 Si 0.789 3.211 27 H -0.213 1.213 28 H -0.225 1.225 29 H -0.193 1.193 30 C 0.026 3.974 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.157 0.843 35 H 0.125 0.875 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.117 0.883 39 H 0.244 0.756 40 H 0.098 0.902 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.068 0.932 46 H 0.087 0.913 47 H 0.068 0.932 48 H 0.014 0.986 49 H 0.057 0.943 50 H 0.041 0.959 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.381 8.552 17.102 19.864 hybrid contribution 0.051 -0.395 -1.552 1.602 sum 5.431 8.157 15.551 18.381 Atomic orbital electron populations 1.20368 0.83402 1.05093 1.04790 1.25175 0.99738 0.86059 0.99814 1.73601 0.89364 1.23746 1.21601 1.84471 1.21393 1.22640 1.68245 1.23954 0.96227 0.83182 0.96686 1.20667 0.83832 0.99815 1.09248 1.23237 0.95582 1.00156 0.99192 1.23244 0.99663 1.04323 0.91483 1.21847 0.93327 0.95155 1.17426 1.16828 0.75873 0.83927 0.83782 1.90788 1.52415 1.68724 1.32159 1.46149 1.69077 1.11539 1.08162 1.20974 0.96158 0.79536 0.97923 0.89534 1.22229 0.94755 1.03290 1.01651 1.21726 1.00361 0.96367 0.93211 0.91384 1.21431 1.01225 0.93649 0.97234 1.22013 0.99875 0.99168 0.95991 1.20615 0.95047 0.83226 0.96235 1.44268 1.73485 1.03440 1.11921 1.19492 1.25200 1.08534 0.85674 0.91520 1.25707 0.98603 1.00601 0.99472 1.70186 1.32019 1.35678 1.20093 0.85371 0.78417 0.78445 0.78860 1.21335 1.22485 1.19301 1.21083 0.96143 0.94511 0.85684 0.88572 0.88596 0.89334 0.84342 0.87485 0.85295 0.85835 0.88299 0.75566 0.90193 0.92773 0.92194 0.90499 0.91653 0.93246 0.91308 0.93228 0.98629 0.94257 0.95941 0.93247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 10.49 71.23 0.75 -0.72 16 2 C 0.05 1.33 7.59 45.15 0.34 1.68 16 3 N -0.37 -9.76 12.01 -44.79 -0.54 -10.30 16 4 O 0.09 2.22 10.86 76.96 0.84 3.05 16 5 C 0.06 1.44 7.00 25.48 0.18 1.62 16 6 C -0.12 -2.02 6.14 -11.54 -0.07 -2.09 16 7 C -0.14 -1.75 10.19 30.62 0.31 -1.44 16 8 C -0.15 -2.10 10.24 30.62 0.31 -1.79 16 9 C -0.27 -6.89 6.24 -18.75 -0.12 -7.00 16 10 C 0.61 16.62 7.60 86.66 0.66 17.28 16 11 O -0.56 -18.56 16.77 -4.07 -0.07 -18.63 16 12 N -0.70 -17.41 5.00 -445.84 -2.23 -19.63 16 13 C 0.16 4.01 2.41 44.99 0.11 4.12 16 14 H 0.09 2.25 7.58 -2.39 -0.02 2.23 16 15 C -0.16 -3.92 8.79 71.99 0.63 -3.28 16 16 C -0.10 -2.81 2.33 -10.72 -0.02 -2.84 16 17 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 18 C -0.10 -2.78 4.78 30.62 0.15 -2.63 16 19 C -0.13 -4.57 6.08 30.68 0.19 -4.39 16 20 C 0.17 8.04 5.31 86.37 0.46 8.50 16 21 N -0.61 -28.70 2.99 -699.08 -2.09 -30.79 16 22 C -0.26 -13.60 9.59 84.03 0.81 -12.79 16 23 H 0.07 3.40 7.89 -2.91 -0.02 3.37 16 24 C -0.05 -2.62 4.91 84.86 0.42 -2.21 16 25 N -0.93 -54.06 11.19 21.65 0.24 -53.82 16 26 Si 0.96 43.73 29.59 68.60 2.03 45.76 16 27 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 28 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 29 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 30 C 0.15 5.58 5.30 86.36 0.46 6.03 16 31 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.14 2.43 8.14 -2.38 -0.02 2.41 16 35 H 0.11 1.29 8.02 -2.39 -0.02 1.27 16 36 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.41 9.89 6.96 -92.70 -0.65 9.24 16 40 H 0.08 1.79 6.46 -2.39 -0.02 1.78 16 41 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.06 1.53 6.32 -2.39 -0.02 1.52 16 43 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.06 1.84 6.50 -2.39 -0.02 1.82 16 45 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.05 2.64 6.04 -2.39 -0.01 2.63 16 48 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 49 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 50 H 0.02 0.86 6.17 -2.39 -0.01 0.84 16 51 H 0.05 1.76 6.52 -2.38 -0.02 1.75 16 Total: -1.00 -67.10 407.32 4.03 -63.07 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.30 Total: 23.24 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 5.55 Total: -1.95 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -4.62 Total: -114.55 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.77 Total: -15.58 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -67.10 4.03 -63.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025486008.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.344 kcal (2) G-P(sol) polarization free energy of solvation -67.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds