Wall clock time and date at job start Wed Apr 1 2020 04:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30013 * 127.33187 * 2 1 4 4 O 1.20659 * 112.29964 * 179.97438 * 3 2 1 5 5 C 1.33494 * 113.15610 * 359.70826 * 4 3 2 6 6 C 1.50700 * 126.83214 * 180.31287 * 5 4 3 7 7 C 1.53000 * 117.49819 * 8.79634 * 6 5 4 8 8 C 1.52998 * 117.49640 * 300.17501 * 6 5 4 9 9 C 1.37360 * 106.33951 * 0.45671 * 5 4 3 10 10 C 1.47404 * 128.56174 * 179.85208 * 9 5 4 11 11 O 1.21610 * 120.00082 * 269.70236 * 10 9 5 12 12 N 1.34779 * 119.99924 * 89.70658 * 10 9 5 13 13 C 1.46498 * 120.00004 * 179.97438 * 12 10 9 14 14 H 1.09004 * 109.47473 * 325.00189 * 13 12 10 15 15 C 1.53002 * 109.46725 * 84.99894 * 13 12 10 16 16 C 1.52995 * 109.47311 * 204.99611 * 13 12 10 17 17 H 1.08997 * 109.49867 * 300.07054 * 16 13 12 18 18 C 1.53035 * 109.49890 * 180.02562 * 16 13 12 19 19 C 1.53043 * 109.53665 * 178.68297 * 18 16 13 20 20 C 1.53196 * 109.31318 * 61.37032 * 19 18 16 21 21 N 1.46922 * 108.88838 * 305.29377 * 20 19 18 22 22 C 1.36945 * 120.62848 * 233.67928 * 21 20 19 23 23 H 1.07999 * 120.00157 * 152.59545 * 22 21 20 24 24 C 1.38807 * 119.99756 * 332.59583 * 22 21 20 25 25 N 1.31622 * 120.00269 * 159.34768 * 24 22 21 26 26 Si 1.86806 * 120.00102 * 339.34630 * 24 22 21 27 27 H 1.48494 * 109.47076 * 92.96261 * 26 24 22 28 28 H 1.48500 * 109.46865 * 212.95938 * 26 24 22 29 29 H 1.48497 * 109.47109 * 332.95955 * 26 24 22 30 30 C 1.47204 * 118.56120 * 53.53831 * 21 20 19 31 31 H 1.09002 * 109.46819 * 270.04610 * 1 2 3 32 32 H 1.08997 * 109.47370 * 30.04323 * 1 2 3 33 33 H 1.09003 * 109.47272 * 150.04805 * 1 2 3 34 34 H 1.08999 * 115.55240 * 154.50336 * 6 5 4 35 35 H 1.09002 * 117.49377 * 359.97438 * 7 6 5 36 36 H 1.08999 * 117.50192 * 145.01792 * 7 6 5 37 37 H 1.09011 * 117.49511 * 214.97484 * 8 6 5 38 38 H 1.08994 * 117.50327 * 359.97438 * 8 6 5 39 39 H 0.97002 * 119.99584 * 359.97438 * 12 10 9 40 40 H 1.09004 * 109.46887 * 180.02562 * 15 13 12 41 41 H 1.09005 * 109.47341 * 299.99839 * 15 13 12 42 42 H 1.09000 * 109.47358 * 60.00153 * 15 13 12 43 43 H 1.09003 * 109.46085 * 58.66959 * 18 16 13 44 44 H 1.08996 * 109.46024 * 298.70722 * 18 16 13 45 45 H 1.08992 * 109.50251 * 301.41412 * 19 18 16 46 46 H 1.09005 * 109.52118 * 181.33185 * 19 18 16 47 47 H 1.08997 * 109.58552 * 65.14377 * 20 19 18 48 48 H 1.08990 * 109.58871 * 185.43060 * 20 19 18 49 49 H 0.96991 * 120.00110 * 180.02562 * 25 24 22 50 50 H 1.09001 * 109.53802 * 186.67718 * 30 21 20 51 51 H 1.08996 * 109.55795 * 66.29602 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6494 -0.6007 0.0072 6 6 4.9712 -1.3245 0.0162 7 6 6.2341 -0.4866 0.2257 8 6 5.9236 -1.0707 -1.1539 9 6 2.3992 -1.1695 0.0008 10 6 2.0401 -2.5992 0.0012 11 8 1.8929 -3.1894 -1.0518 12 7 1.8750 -3.2522 1.1686 13 6 1.5176 -4.6730 1.1689 14 1 0.8579 -4.8820 0.3267 15 6 2.7869 -5.5181 1.0444 16 6 0.8012 -5.0183 2.4759 17 1 1.4601 -4.8084 3.3184 18 6 0.4282 -6.5025 2.4772 19 6 -0.2592 -6.8563 3.7980 20 6 -1.5448 -6.0347 3.9361 21 7 -1.2163 -4.6098 3.7927 22 6 -1.5925 -3.7072 4.7514 23 1 -1.0182 -2.8044 4.8982 24 6 -2.7120 -3.9527 5.5346 25 7 -2.8544 -3.3386 6.6900 26 14 -4.0164 -5.1547 4.9487 27 1 -3.7247 -6.5054 5.4921 28 1 -5.3505 -4.7076 5.4238 29 1 -4.0112 -5.2063 3.4647 30 6 -0.4723 -4.1758 2.5990 31 1 -0.3633 0.0008 1.0277 32 1 -0.3634 0.8896 -0.5145 33 1 -0.3634 -0.8904 -0.5131 34 1 4.9553 -2.3270 0.4439 35 1 6.1088 0.5883 0.3565 36 1 7.0493 -0.9376 0.7914 37 1 6.5347 -1.9062 -1.4958 38 1 5.5941 -0.3805 -1.9305 39 1 1.9927 -2.7815 2.0085 40 1 2.5210 -6.5752 1.0442 41 1 3.2974 -5.2720 0.1132 42 1 3.4467 -5.3092 1.8865 43 1 1.3304 -7.1038 2.3650 44 1 -0.2498 -6.7073 1.6487 45 1 0.4090 -6.6287 4.6284 46 1 -0.5036 -7.9186 3.8083 47 1 -2.2505 -6.3269 3.1585 48 1 -1.9875 -6.2108 4.9163 49 1 -3.6364 -3.5104 7.2374 50 1 -0.2060 -3.1234 2.6981 51 1 -1.0906 -4.3165 1.7125 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025486011.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:57 Heat of formation + Delta-G solvation = 63.531306 kcal Electronic energy + Delta-G solvation = -31687.040282 eV Core-core repulsion = 27590.948426 eV Total energy + Delta-G solvation = -4096.091856 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.02869 -39.94282 -38.20135 -37.74491 -35.48122 -34.68960 -33.11408 -32.07000 -31.18044 -30.68621 -29.03634 -28.85614 -25.55884 -25.00287 -23.94679 -23.50229 -22.82427 -21.98697 -21.09481 -20.54238 -19.81959 -19.39454 -18.08325 -17.79590 -16.87537 -16.70345 -16.18189 -16.08270 -15.42929 -14.91339 -14.53997 -14.26812 -14.05898 -13.84516 -13.68601 -13.48367 -13.43502 -13.26766 -13.10647 -12.98648 -12.68000 -12.40629 -12.33603 -12.13817 -12.01055 -11.75095 -11.70158 -11.43397 -11.41536 -11.35881 -10.84841 -10.83323 -10.62289 -10.46815 -10.27139 -10.14498 -9.99596 -9.86978 -9.67852 -9.46922 -9.38779 -9.11153 -8.63065 -7.00792 -5.98438 -3.34258 1.05893 1.78266 2.33160 2.57174 3.18776 3.29712 3.36090 3.46628 3.49611 3.86940 4.01283 4.30682 4.45797 4.48352 4.50204 4.63028 4.76392 5.01606 5.08556 5.10458 5.15272 5.19735 5.21066 5.34665 5.35276 5.40200 5.42799 5.48313 5.53989 5.54605 5.56976 5.60170 5.65731 5.81424 5.85155 5.93293 5.95855 6.02908 6.07326 6.20087 6.27184 6.35469 6.40834 6.53811 6.57420 6.67279 6.68817 6.93526 7.42435 7.91743 8.06982 8.09297 8.28346 8.89874 9.68596 10.06878 11.17448 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013137 B = 0.003052 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.824428 B = 9170.851241 C =10308.453164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.062 3.938 3 N -0.355 5.355 4 O 0.096 5.904 5 C 0.046 3.954 6 C -0.092 4.092 7 C -0.161 4.161 8 C -0.156 4.156 9 C -0.242 4.242 10 C 0.602 3.398 11 O -0.528 6.528 12 N -0.707 5.707 13 C 0.147 3.853 14 H 0.089 0.911 15 C -0.162 4.162 16 C -0.113 4.113 17 H 0.077 0.923 18 C -0.102 4.102 19 C -0.134 4.134 20 C 0.123 3.877 21 N -0.605 5.605 22 C -0.260 4.260 23 H 0.084 0.916 24 C 0.024 3.976 25 N -0.908 5.908 26 Si 0.883 3.117 27 H -0.289 1.289 28 H -0.304 1.304 29 H -0.271 1.271 30 C 0.157 3.843 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.138 0.862 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.404 0.596 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.024 0.976 48 H 0.071 0.929 49 H 0.263 0.737 50 H 0.060 0.940 51 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.936 0.893 -13.645 21.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 N -0.062 5.062 4 O 0.034 5.966 5 C -0.017 4.017 6 C -0.111 4.111 7 C -0.198 4.198 8 C -0.194 4.194 9 C -0.249 4.249 10 C 0.386 3.614 11 O -0.404 6.404 12 N -0.357 5.357 13 C 0.043 3.957 14 H 0.107 0.893 15 C -0.221 4.221 16 C -0.134 4.134 17 H 0.095 0.905 18 C -0.140 4.140 19 C -0.173 4.173 20 C -0.002 4.002 21 N -0.329 5.329 22 C -0.388 4.388 23 H 0.102 0.898 24 C -0.175 4.175 25 N -0.551 5.551 26 Si 0.714 3.286 27 H -0.216 1.216 28 H -0.232 1.232 29 H -0.196 1.196 30 C 0.031 3.969 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.156 0.844 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.239 0.761 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.042 0.958 48 H 0.089 0.911 49 H 0.072 0.928 50 H 0.078 0.922 51 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 16.508 1.839 -14.245 21.882 hybrid contribution -0.960 -1.219 0.284 1.578 sum 15.548 0.620 -13.961 20.905 Atomic orbital electron populations 1.20295 0.84790 1.04310 1.04531 1.24791 0.98713 0.86278 1.00248 1.73632 0.88938 1.23185 1.20484 1.84498 1.21678 1.22238 1.68148 1.23478 0.95385 0.83647 0.99203 1.20482 0.84073 0.99442 1.07144 1.23111 0.96828 1.00388 0.99509 1.23117 1.00574 1.03879 0.91794 1.21856 0.92476 0.95499 1.15113 1.16813 0.76724 0.83657 0.84174 1.90812 1.50372 1.67916 1.31330 1.46095 1.69820 1.11658 1.08174 1.21101 0.96175 0.78747 0.99669 0.89342 1.22213 0.97664 1.00386 1.01791 1.21967 0.98802 0.97191 0.95396 0.90453 1.21451 0.99717 0.94583 0.98267 1.21997 0.99311 0.98759 0.97268 1.21352 0.94357 0.84619 0.99912 1.44389 1.65271 1.02240 1.20957 1.18875 1.07370 1.02999 1.09574 0.89824 1.25260 0.97674 0.98001 0.96537 1.69832 1.29564 1.45423 1.10283 0.86949 0.81901 0.80279 0.79504 1.21642 1.23214 1.19583 1.20940 0.90222 0.96469 0.89278 0.88908 0.89914 0.89585 0.84396 0.87555 0.87309 0.87275 0.88004 0.76054 0.91112 0.92520 0.92458 0.92425 0.92385 0.91744 0.92715 0.95834 0.91075 0.92754 0.92177 0.95956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.49 36.01 0.38 -0.55 16 2 C 0.06 0.82 7.59 -79.77 -0.61 0.21 16 3 N -0.36 -4.86 12.01 34.78 0.42 -4.44 16 4 O 0.10 1.17 10.86 18.65 0.20 1.38 16 5 C 0.05 0.52 7.00 -34.63 -0.24 0.28 16 6 C -0.09 -0.77 6.15 -91.77 -0.56 -1.33 16 7 C -0.16 -0.99 10.18 -26.73 -0.27 -1.26 16 8 C -0.16 -1.04 10.23 -26.73 -0.27 -1.31 16 9 C -0.24 -3.14 6.24 -102.89 -0.64 -3.78 16 10 C 0.60 8.27 7.60 -12.53 -0.10 8.18 16 11 O -0.53 -8.86 16.77 5.27 0.09 -8.78 16 12 N -0.71 -8.65 4.48 -54.89 -0.25 -8.90 16 13 C 0.15 1.85 2.16 -67.93 -0.15 1.71 16 14 H 0.09 1.26 7.58 -51.93 -0.39 0.86 16 15 C -0.16 -1.73 9.13 37.16 0.34 -1.39 16 16 C -0.11 -1.63 1.97 -90.50 -0.18 -1.81 16 17 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 18 C -0.10 -1.44 4.85 -26.69 -0.13 -1.57 16 19 C -0.13 -2.23 6.08 -26.61 -0.16 -2.39 16 20 C 0.12 2.60 4.20 -3.71 -0.02 2.59 16 21 N -0.61 -13.79 2.78 -172.10 -0.48 -14.26 16 22 C -0.26 -7.05 10.05 -15.06 -0.15 -7.20 16 23 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 24 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 25 N -0.91 -27.44 13.97 55.49 0.78 -26.67 16 26 Si 0.88 22.19 24.35 -169.99 -4.14 18.05 16 27 H -0.29 -6.99 6.62 56.52 0.37 -6.62 16 28 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 29 H -0.27 -6.71 6.64 56.52 0.38 -6.34 16 30 C 0.16 2.89 5.57 -3.56 -0.02 2.87 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.14 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.11 0.67 8.02 -51.93 -0.42 0.25 16 36 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.11 0.57 8.14 -51.92 -0.42 0.14 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.40 4.59 8.41 -40.82 -0.34 4.25 16 40 H 0.07 0.70 6.40 -51.93 -0.33 0.37 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.68 6.36 -51.93 -0.33 0.35 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.02 0.50 7.08 -51.93 -0.37 0.13 16 48 H 0.07 1.66 4.49 -51.93 -0.23 1.43 16 49 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 50 H 0.06 1.10 7.46 -51.93 -0.39 0.71 16 51 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 406.46 15.07 6.13 6.13 Total: -1.00 -32.75 406.46 -8.46 -41.21 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -8.33 Total: 2.45 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -2.87 Total: -6.17 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: 0.47 Total: -54.27 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: 0.29 Total: -7.40 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.14 Total: 18.05 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.75 -8.46 -41.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025486011.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.739 kcal (2) G-P(sol) polarization free energy of solvation -32.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds