Wall clock time and date at job start Wed Apr 1 2020 04:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30013 * 127.33187 * 2 1 4 4 O 1.20659 * 112.29964 * 179.97438 * 3 2 1 5 5 C 1.33494 * 113.15610 * 359.70826 * 4 3 2 6 6 C 1.50700 * 126.83214 * 180.31287 * 5 4 3 7 7 C 1.53000 * 117.49819 * 8.79634 * 6 5 4 8 8 C 1.52998 * 117.49640 * 300.17501 * 6 5 4 9 9 C 1.37360 * 106.33951 * 0.45671 * 5 4 3 10 10 C 1.47404 * 128.56174 * 179.85208 * 9 5 4 11 11 O 1.21610 * 120.00082 * 269.70236 * 10 9 5 12 12 N 1.34779 * 119.99924 * 89.70658 * 10 9 5 13 13 C 1.46498 * 120.00004 * 179.97438 * 12 10 9 14 14 H 1.09004 * 109.47473 * 325.00189 * 13 12 10 15 15 C 1.53002 * 109.46725 * 84.99894 * 13 12 10 16 16 C 1.52995 * 109.47311 * 204.99611 * 13 12 10 17 17 H 1.08997 * 109.49867 * 300.07054 * 16 13 12 18 18 C 1.53035 * 109.49890 * 180.02562 * 16 13 12 19 19 C 1.53043 * 109.53665 * 178.68297 * 18 16 13 20 20 C 1.53196 * 109.31318 * 61.37032 * 19 18 16 21 21 N 1.46922 * 108.88838 * 305.29377 * 20 19 18 22 22 C 1.36945 * 120.62848 * 233.67928 * 21 20 19 23 23 H 1.07999 * 120.00157 * 152.59545 * 22 21 20 24 24 C 1.38807 * 119.99756 * 332.59583 * 22 21 20 25 25 N 1.31622 * 120.00269 * 159.34768 * 24 22 21 26 26 Si 1.86806 * 120.00102 * 339.34630 * 24 22 21 27 27 H 1.48494 * 109.47076 * 92.96261 * 26 24 22 28 28 H 1.48500 * 109.46865 * 212.95938 * 26 24 22 29 29 H 1.48497 * 109.47109 * 332.95955 * 26 24 22 30 30 C 1.47204 * 118.56120 * 53.53831 * 21 20 19 31 31 H 1.09002 * 109.46819 * 270.04610 * 1 2 3 32 32 H 1.08997 * 109.47370 * 30.04323 * 1 2 3 33 33 H 1.09003 * 109.47272 * 150.04805 * 1 2 3 34 34 H 1.08999 * 115.55240 * 154.50336 * 6 5 4 35 35 H 1.09002 * 117.49377 * 359.97438 * 7 6 5 36 36 H 1.08999 * 117.50192 * 145.01792 * 7 6 5 37 37 H 1.09011 * 117.49511 * 214.97484 * 8 6 5 38 38 H 1.08994 * 117.50327 * 359.97438 * 8 6 5 39 39 H 0.97002 * 119.99584 * 359.97438 * 12 10 9 40 40 H 1.09004 * 109.46887 * 180.02562 * 15 13 12 41 41 H 1.09005 * 109.47341 * 299.99839 * 15 13 12 42 42 H 1.09000 * 109.47358 * 60.00153 * 15 13 12 43 43 H 1.09003 * 109.46085 * 58.66959 * 18 16 13 44 44 H 1.08996 * 109.46024 * 298.70722 * 18 16 13 45 45 H 1.08992 * 109.50251 * 301.41412 * 19 18 16 46 46 H 1.09005 * 109.52118 * 181.33185 * 19 18 16 47 47 H 1.08997 * 109.58552 * 65.14377 * 20 19 18 48 48 H 1.08990 * 109.58871 * 185.43060 * 20 19 18 49 49 H 0.96991 * 120.00110 * 180.02562 * 25 24 22 50 50 H 1.09001 * 109.53802 * 186.67718 * 30 21 20 51 51 H 1.08996 * 109.55795 * 66.29602 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 0.0005 5 6 3.6494 -0.6007 0.0072 6 6 4.9712 -1.3245 0.0162 7 6 6.2341 -0.4866 0.2257 8 6 5.9236 -1.0707 -1.1539 9 6 2.3992 -1.1695 0.0008 10 6 2.0401 -2.5992 0.0012 11 8 1.8929 -3.1894 -1.0518 12 7 1.8750 -3.2522 1.1686 13 6 1.5176 -4.6730 1.1689 14 1 0.8579 -4.8820 0.3267 15 6 2.7869 -5.5181 1.0444 16 6 0.8012 -5.0183 2.4759 17 1 1.4601 -4.8084 3.3184 18 6 0.4282 -6.5025 2.4772 19 6 -0.2592 -6.8563 3.7980 20 6 -1.5448 -6.0347 3.9361 21 7 -1.2163 -4.6098 3.7927 22 6 -1.5925 -3.7072 4.7514 23 1 -1.0182 -2.8044 4.8982 24 6 -2.7120 -3.9527 5.5346 25 7 -2.8544 -3.3386 6.6900 26 14 -4.0164 -5.1547 4.9487 27 1 -3.7247 -6.5054 5.4921 28 1 -5.3505 -4.7076 5.4238 29 1 -4.0112 -5.2063 3.4647 30 6 -0.4723 -4.1758 2.5990 31 1 -0.3633 0.0008 1.0277 32 1 -0.3634 0.8896 -0.5145 33 1 -0.3634 -0.8904 -0.5131 34 1 4.9553 -2.3270 0.4439 35 1 6.1088 0.5883 0.3565 36 1 7.0493 -0.9376 0.7914 37 1 6.5347 -1.9062 -1.4958 38 1 5.5941 -0.3805 -1.9305 39 1 1.9927 -2.7815 2.0085 40 1 2.5210 -6.5752 1.0442 41 1 3.2974 -5.2720 0.1132 42 1 3.4467 -5.3092 1.8865 43 1 1.3304 -7.1038 2.3650 44 1 -0.2498 -6.7073 1.6487 45 1 0.4090 -6.6287 4.6284 46 1 -0.5036 -7.9186 3.8083 47 1 -2.2505 -6.3269 3.1585 48 1 -1.9875 -6.2108 4.9163 49 1 -3.6364 -3.5104 7.2374 50 1 -0.2060 -3.1234 2.6981 51 1 -1.0906 -4.3165 1.7125 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025486011.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:56 Heat of formation + Delta-G solvation = 43.660028 kcal Electronic energy + Delta-G solvation = -31687.901965 eV Core-core repulsion = 27590.948426 eV Total energy + Delta-G solvation = -4096.953539 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.01226 -41.07226 -39.56385 -38.35793 -36.83863 -35.68430 -34.72770 -33.26106 -32.72556 -32.03279 -30.24112 -29.82710 -27.10914 -26.25973 -24.95608 -24.55737 -23.51659 -23.31622 -22.42367 -21.60933 -20.98812 -20.47536 -19.09137 -18.84019 -18.66247 -17.64637 -17.31268 -17.21885 -16.92396 -16.05352 -15.68057 -15.57706 -15.40980 -15.18403 -14.89008 -14.79006 -14.38859 -14.36375 -14.24607 -14.16526 -13.96388 -13.88234 -13.57250 -13.26652 -13.09117 -12.79833 -12.63780 -12.56098 -12.51005 -12.43778 -12.18769 -12.17197 -11.90506 -11.66137 -11.53219 -11.46140 -11.44100 -11.25231 -11.09289 -11.00620 -10.67557 -10.25607 -10.15869 -8.91872 -8.17094 -5.47784 0.15719 0.76855 1.26310 1.28114 1.40155 1.48554 1.67026 2.19425 2.40677 2.78003 3.01706 3.04877 3.11860 3.29405 3.58721 3.67384 3.78683 3.86578 3.95106 3.96878 4.02683 4.14173 4.22761 4.34832 4.40258 4.43630 4.49920 4.50937 4.55239 4.62541 4.64462 4.73160 4.75360 4.78866 4.89416 4.91411 4.99197 5.00241 5.01987 5.05032 5.10092 5.17126 5.19986 5.20826 5.27448 5.43287 5.47196 5.60320 5.86218 6.12055 6.38272 6.91690 7.03569 7.10869 7.62611 8.03911 9.02739 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013137 B = 0.003052 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.824428 B = 9170.851241 C =10308.453164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.051 3.949 3 N -0.375 5.375 4 O 0.094 5.906 5 C 0.063 3.937 6 C -0.115 4.115 7 C -0.146 4.146 8 C -0.151 4.151 9 C -0.269 4.269 10 C 0.611 3.389 11 O -0.561 6.561 12 N -0.699 5.699 13 C 0.154 3.846 14 H 0.076 0.924 15 C -0.155 4.155 16 C -0.098 4.098 17 H 0.076 0.924 18 C -0.099 4.099 19 C -0.127 4.127 20 C 0.114 3.886 21 N -0.619 5.619 22 C -0.244 4.244 23 H 0.054 0.946 24 C -0.034 4.034 25 N -0.957 5.957 26 Si 0.944 3.056 27 H -0.274 1.274 28 H -0.314 1.314 29 H -0.265 1.265 30 C 0.154 3.846 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.147 0.853 35 H 0.103 0.897 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.095 0.905 39 H 0.409 0.591 40 H 0.085 0.915 41 H 0.052 0.948 42 H 0.069 0.931 43 H 0.093 0.907 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.082 0.918 47 H 0.027 0.973 48 H 0.045 0.955 49 H 0.261 0.739 50 H 0.052 0.948 51 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.103 -1.181 -15.016 24.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 N -0.083 5.083 4 O 0.034 5.966 5 C -0.001 4.001 6 C -0.134 4.134 7 C -0.182 4.182 8 C -0.188 4.188 9 C -0.276 4.276 10 C 0.396 3.604 11 O -0.440 6.440 12 N -0.349 5.349 13 C 0.050 3.950 14 H 0.094 0.906 15 C -0.213 4.213 16 C -0.119 4.119 17 H 0.095 0.905 18 C -0.137 4.137 19 C -0.166 4.166 20 C -0.011 4.011 21 N -0.343 5.343 22 C -0.373 4.373 23 H 0.072 0.928 24 C -0.228 4.228 25 N -0.603 5.603 26 Si 0.774 3.226 27 H -0.201 1.201 28 H -0.243 1.243 29 H -0.190 1.190 30 C 0.029 3.971 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.164 0.836 35 H 0.122 0.878 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.113 0.887 39 H 0.245 0.755 40 H 0.104 0.896 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.112 0.888 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.100 0.900 47 H 0.045 0.955 48 H 0.064 0.936 49 H 0.070 0.930 50 H 0.071 0.929 51 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 18.708 -0.262 -15.638 24.385 hybrid contribution -1.540 -0.501 0.684 1.758 sum 17.168 -0.763 -14.955 22.781 Atomic orbital electron populations 1.20324 0.84070 1.04784 1.04607 1.25090 0.99440 0.86471 1.00086 1.73611 0.89444 1.23685 1.21548 1.84468 1.21198 1.22831 1.68070 1.24029 0.96276 0.83081 0.96698 1.20718 0.83346 0.99966 1.09400 1.23231 0.95732 1.00099 0.99172 1.23236 0.99564 1.04360 0.91614 1.21846 0.93252 0.95114 1.17374 1.16794 0.76013 0.83744 0.83847 1.90789 1.52071 1.68680 1.32420 1.46066 1.69025 1.11749 1.08068 1.21024 0.97055 0.79115 0.97817 0.90625 1.22153 0.96351 1.00621 1.02137 1.21773 0.96546 0.97150 0.96395 0.90542 1.21480 1.01163 0.94182 0.96861 1.21908 0.96732 0.99433 0.98477 1.21446 0.96924 0.84194 0.98516 1.44528 1.65699 1.02629 1.21477 1.18848 1.06325 1.02551 1.09597 0.92826 1.25847 0.99721 1.00542 0.96739 1.69955 1.30282 1.48290 1.11776 0.85956 0.78654 0.78986 0.79045 1.20064 1.24319 1.19012 1.21090 0.91570 0.97087 0.87363 0.88960 0.88698 0.89835 0.83569 0.87827 0.85060 0.85373 0.88656 0.75502 0.89585 0.92889 0.91219 0.88820 0.91882 0.92471 0.89959 0.95488 0.93645 0.93042 0.92929 0.96095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.88 10.49 71.24 0.75 -1.13 16 2 C 0.05 1.37 7.59 45.16 0.34 1.71 16 3 N -0.37 -10.33 12.01 -44.79 -0.54 -10.87 16 4 O 0.09 2.29 10.86 76.98 0.84 3.13 16 5 C 0.06 1.38 7.00 25.48 0.18 1.56 16 6 C -0.12 -1.70 6.15 -11.54 -0.07 -1.78 16 7 C -0.15 -1.42 10.18 30.59 0.31 -1.11 16 8 C -0.15 -1.66 10.23 30.59 0.31 -1.35 16 9 C -0.27 -6.92 6.24 -18.74 -0.12 -7.04 16 10 C 0.61 16.46 7.60 86.66 0.66 17.12 16 11 O -0.56 -18.55 16.77 -4.06 -0.07 -18.62 16 12 N -0.70 -16.35 4.48 -445.82 -2.00 -18.34 16 13 C 0.15 3.54 2.16 44.99 0.10 3.63 16 14 H 0.08 2.00 7.58 -2.39 -0.02 1.98 16 15 C -0.15 -2.74 9.13 71.98 0.66 -2.09 16 16 C -0.10 -2.62 1.97 -10.72 -0.02 -2.64 16 17 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 18 C -0.10 -2.41 4.85 30.62 0.15 -2.26 16 19 C -0.13 -3.81 6.08 30.67 0.19 -3.62 16 20 C 0.11 4.63 4.20 86.36 0.36 4.99 16 21 N -0.62 -27.97 2.78 -698.40 -1.94 -29.92 16 22 C -0.24 -13.50 10.05 84.03 0.84 -12.65 16 23 H 0.05 3.23 8.06 -2.91 -0.02 3.21 16 24 C -0.03 -1.96 5.23 84.86 0.44 -1.51 16 25 N -0.96 -59.71 13.97 21.65 0.30 -59.40 16 26 Si 0.94 46.58 24.35 68.60 1.67 48.25 16 27 H -0.27 -12.71 6.62 99.48 0.66 -12.06 16 28 H -0.31 -15.87 7.11 99.48 0.71 -15.17 16 29 H -0.27 -12.66 6.64 99.48 0.66 -12.00 16 30 C 0.15 5.55 5.57 86.31 0.48 6.03 16 31 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.15 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.10 1.10 8.02 -2.39 -0.02 1.08 16 36 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.13 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.41 8.96 8.41 -92.71 -0.78 8.18 16 40 H 0.09 1.29 6.40 -2.39 -0.02 1.27 16 41 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.09 1.69 6.36 -2.39 -0.02 1.68 16 44 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.08 2.05 8.14 -2.38 -0.02 2.04 16 47 H 0.03 1.09 7.08 -2.39 -0.02 1.07 16 48 H 0.05 2.08 4.49 -2.39 -0.01 2.07 16 49 H 0.26 15.53 8.31 -92.72 -0.77 14.75 16 50 H 0.05 1.94 7.46 -2.39 -0.02 1.92 16 51 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -72.94 406.46 3.89 -69.05 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.07 Total: 18.85 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 5.56 Total: -2.12 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -4.17 Total: -118.53 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: 0.77 Total: -15.49 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.67 Total: 48.25 kcal Total: -72.94 3.89 -69.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025486011.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.707 kcal (2) G-P(sol) polarization free energy of solvation -72.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds