Wall clock time and date at job start Wed Apr 1 2020 05:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34261 * 126.52201 * 2 1 4 4 C 1.34045 * 108.22635 * 180.02562 * 3 2 1 5 5 C 1.50707 * 125.38059 * 179.97438 * 4 3 2 6 6 C 1.53000 * 117.49405 * 300.02299 * 5 4 3 7 7 C 1.53002 * 60.03048 * 107.49901 * 6 5 4 8 8 N 1.29941 * 109.24233 * 0.26056 * 4 3 2 9 9 C 1.36066 * 108.47684 * 359.57863 * 8 4 3 10 10 C 1.47419 * 126.44976 * 180.16420 * 9 8 4 11 11 O 1.21608 * 120.00167 * 180.29669 * 10 9 8 12 12 N 1.34775 * 119.99708 * 0.29830 * 10 9 8 13 13 C 1.46505 * 120.00110 * 179.97438 * 12 10 9 14 14 H 1.09008 * 109.46440 * 34.99975 * 13 12 10 15 15 C 1.53001 * 109.47150 * 275.00540 * 13 12 10 16 16 C 1.52991 * 109.47407 * 154.99841 * 13 12 10 17 17 H 1.09002 * 109.50331 * 305.06825 * 16 13 12 18 18 C 1.53045 * 109.49854 * 185.00259 * 16 13 12 19 19 C 1.53039 * 109.53537 * 178.68774 * 18 16 13 20 20 C 1.53189 * 109.31759 * 61.36620 * 19 18 16 21 21 N 1.46925 * 108.77285 * 305.36238 * 20 19 18 22 22 C 1.36939 * 120.63237 * 233.58806 * 21 20 19 23 23 H 1.08003 * 120.00114 * 151.83275 * 22 21 20 24 24 C 1.38816 * 119.99637 * 331.83269 * 22 21 20 25 25 N 1.31617 * 120.00104 * 343.07587 * 24 22 21 26 26 Si 1.86796 * 119.99881 * 163.08210 * 24 22 21 27 27 H 1.48504 * 109.47428 * 89.99873 * 26 24 22 28 28 H 1.48494 * 109.47262 * 209.99762 * 26 24 22 29 29 H 1.48502 * 109.46999 * 329.99889 * 26 24 22 30 30 C 1.46924 * 118.73977 * 53.60874 * 21 20 19 31 31 H 1.09000 * 109.47650 * 359.97438 * 1 2 3 32 32 H 1.08994 * 109.46923 * 119.98171 * 1 2 3 33 33 H 1.09003 * 109.47028 * 239.97716 * 1 2 3 34 34 H 1.08997 * 115.54857 * 154.35672 * 5 4 3 35 35 H 1.08998 * 117.49600 * 214.99576 * 6 5 4 36 36 H 1.08992 * 117.50039 * 359.97438 * 6 5 4 37 37 H 1.09001 * 117.50269 * 107.49564 * 7 6 5 38 38 H 1.08993 * 117.50065 * 252.52010 * 7 6 5 39 39 H 0.96999 * 120.00396 * 0.02562 * 12 10 9 40 40 H 1.08997 * 109.46966 * 179.97438 * 15 13 12 41 41 H 1.08999 * 109.46627 * 299.99576 * 15 13 12 42 42 H 1.08998 * 109.47324 * 59.99225 * 15 13 12 43 43 H 1.08994 * 109.45671 * 298.70436 * 18 16 13 44 44 H 1.08992 * 109.45792 * 58.67942 * 18 16 13 45 45 H 1.09000 * 109.49269 * 181.31687 * 19 18 16 46 46 H 1.09000 * 109.49891 * 301.37765 * 19 18 16 47 47 H 1.08990 * 109.58700 * 65.14828 * 20 19 18 48 48 H 1.09001 * 109.58686 * 185.57833 * 20 19 18 49 49 H 0.96998 * 119.99957 * 179.97438 * 25 24 22 50 50 H 1.09003 * 109.59214 * 186.60536 * 30 21 20 51 51 H 1.08998 * 109.58879 * 66.18086 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0790 0.0000 4 6 3.5787 0.6582 -0.0006 5 6 4.7929 1.5509 -0.0013 6 6 4.9592 2.5162 -1.1767 7 6 4.5676 3.0512 0.2023 8 7 3.6002 -0.6411 -0.0065 9 6 2.3170 -1.0936 -0.0005 10 6 1.8854 -2.5032 -0.0006 11 8 0.7003 -2.7762 -0.0003 12 7 2.8041 -3.4892 -0.0012 13 6 2.3753 -4.8901 -0.0008 14 1 1.4635 -4.9910 -0.5897 15 6 2.1066 -5.3408 1.4364 16 6 3.4755 -5.7605 -0.6111 17 1 3.7303 -5.3836 -1.6017 18 6 2.9803 -7.2040 -0.7257 19 6 4.0683 -8.0690 -1.3662 20 6 5.3157 -8.0550 -0.4771 21 7 5.7137 -6.6602 -0.2429 22 6 6.9903 -6.2443 -0.5125 23 1 7.1774 -5.2152 -0.7817 24 6 8.0437 -7.1453 -0.4397 25 7 7.8900 -8.2875 0.1959 26 14 9.6796 -6.7365 -1.2436 27 1 10.5462 -6.0259 -0.2692 28 1 10.3460 -7.9912 -1.6756 29 1 9.4470 -5.8674 -2.4250 30 6 4.7163 -5.7203 0.2866 31 1 -0.3634 1.0276 0.0005 32 1 -0.3633 -0.5135 -0.8901 33 1 -0.3633 -0.5142 0.8898 34 1 5.6970 1.1151 0.4239 35 1 5.9727 2.7157 -1.5245 36 1 4.1907 2.5053 -1.9495 37 1 5.3235 3.6025 0.7616 38 1 3.5411 3.3921 0.3369 39 1 3.7494 -3.2714 -0.0011 40 1 1.7871 -6.3829 1.4366 41 1 3.0183 -5.2398 2.0252 42 1 1.3228 -4.7207 1.8712 43 1 2.7487 -7.5884 0.2676 44 1 2.0833 -7.2321 -1.3442 45 1 3.7062 -9.0919 -1.4689 46 1 4.3175 -7.6708 -2.3498 47 1 5.0912 -8.5357 0.4749 48 1 6.1257 -8.5874 -0.9756 49 1 8.6260 -8.9173 0.2464 50 1 5.1308 -4.7122 0.2920 51 1 4.4429 -6.0106 1.3010 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025582669.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:26 Heat of formation + Delta-G solvation = 22.053165 kcal Electronic energy + Delta-G solvation = -31105.450982 eV Core-core repulsion = 27007.560499 eV Total energy + Delta-G solvation = -4097.890483 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.65201 -39.76156 -38.00116 -37.57255 -35.18351 -35.01985 -32.96094 -32.45874 -30.99787 -30.41354 -28.19028 -27.69908 -25.26809 -24.91863 -23.72691 -22.97809 -22.74851 -22.13725 -21.40768 -20.26352 -19.97629 -18.59439 -17.84079 -17.19724 -16.77176 -16.57305 -15.81094 -15.63450 -14.89916 -14.84903 -14.80399 -14.32420 -14.10030 -13.79704 -13.70773 -13.41538 -13.32193 -13.04246 -12.86211 -12.62308 -12.49652 -12.32061 -12.23140 -12.02961 -11.79185 -11.73489 -11.59421 -11.04055 -11.03868 -10.96980 -10.90490 -10.85912 -10.53636 -10.43571 -10.18607 -10.14609 -9.98320 -9.82371 -9.56788 -9.35957 -9.00984 -8.73526 -8.43158 -6.62239 -5.76182 -3.18368 0.91169 1.80043 2.18502 3.15237 3.23688 3.38694 3.39336 3.45757 3.48480 3.60230 4.25599 4.41163 4.46815 4.50907 4.54800 4.78050 4.91768 5.08464 5.16873 5.22120 5.25452 5.27064 5.36527 5.43370 5.47192 5.55764 5.61138 5.61935 5.66545 5.72556 5.74777 5.75738 5.86329 5.91729 6.06420 6.16807 6.26999 6.29095 6.39086 6.53503 6.63863 6.67856 6.74243 6.83111 6.90494 7.03075 7.29242 7.43389 7.69877 7.70798 7.82347 8.25676 8.47954 9.24308 9.87816 10.44719 11.32181 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009724 B = 0.003034 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.737705 B = 9225.281648 C =11715.362535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.034 3.966 3 O -0.197 6.197 4 C 0.223 3.777 5 C -0.071 4.071 6 C -0.157 4.157 7 C -0.163 4.163 8 N -0.447 5.447 9 C -0.071 4.071 10 C 0.602 3.398 11 O -0.542 6.542 12 N -0.701 5.701 13 C 0.149 3.851 14 H 0.083 0.917 15 C -0.165 4.165 16 C -0.113 4.113 17 H 0.072 0.928 18 C -0.100 4.100 19 C -0.142 4.142 20 C 0.170 3.830 21 N -0.591 5.591 22 C -0.252 4.252 23 H 0.064 0.936 24 C 0.003 3.997 25 N -0.902 5.902 26 Si 0.900 3.100 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.280 1.280 30 C 0.151 3.849 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.150 0.850 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.411 0.589 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.052 0.948 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.049 0.951 46 H 0.053 0.947 47 H 0.017 0.983 48 H 0.086 0.914 49 H 0.253 0.747 50 H 0.048 0.952 51 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.554 19.017 -0.411 22.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.022 4.022 3 O -0.085 6.085 4 C 0.015 3.985 5 C -0.090 4.090 6 C -0.195 4.195 7 C -0.200 4.200 8 N -0.176 5.176 9 C -0.191 4.191 10 C 0.387 3.613 11 O -0.421 6.421 12 N -0.351 5.351 13 C 0.045 3.955 14 H 0.101 0.899 15 C -0.223 4.223 16 C -0.134 4.134 17 H 0.090 0.910 18 C -0.138 4.138 19 C -0.182 4.182 20 C 0.044 3.956 21 N -0.313 5.313 22 C -0.381 4.381 23 H 0.082 0.918 24 C -0.196 4.196 25 N -0.547 5.547 26 Si 0.730 3.270 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.205 1.205 30 C 0.024 3.976 31 H 0.095 0.905 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.168 0.832 35 H 0.131 0.869 36 H 0.118 0.882 37 H 0.129 0.871 38 H 0.121 0.879 39 H 0.248 0.752 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.035 0.965 48 H 0.104 0.896 49 H 0.063 0.937 50 H 0.067 0.933 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -12.697 18.281 -0.388 22.262 hybrid contribution 0.889 0.580 -0.365 1.123 sum -11.808 18.862 -0.753 22.266 Atomic orbital electron populations 1.20429 0.82444 1.03628 1.05579 1.23693 0.95023 0.83283 1.00217 1.84267 1.17890 1.36302 1.70022 1.24954 0.83012 0.89555 1.00999 1.20303 0.92316 0.89402 1.06990 1.23145 1.04163 1.00536 0.91664 1.23126 1.03972 0.93165 0.99785 1.70742 1.21507 1.08642 1.16730 1.21597 0.88704 0.95797 1.13014 1.16680 0.85595 0.82492 0.76550 1.90772 1.16242 1.83365 1.51676 1.46015 1.10419 1.05934 1.72724 1.21098 0.98293 0.78884 0.97212 0.89880 1.22262 1.02074 1.01518 0.96419 1.21953 0.95832 0.94906 1.00669 0.90957 1.21417 0.97521 0.94346 1.00502 1.22182 0.97971 0.97631 1.00377 1.20783 0.93387 0.86008 0.95397 1.44018 1.07405 1.05928 1.73929 1.19171 0.82990 0.96018 1.39962 0.91787 1.25024 0.97539 0.97789 0.99234 1.70036 1.31677 1.10247 1.42724 0.86332 0.83980 0.77225 0.79457 1.21415 1.21601 1.20502 1.21002 0.88541 0.94107 0.93932 0.90488 0.88267 0.88235 0.83235 0.86940 0.88188 0.87108 0.87907 0.75220 0.91284 0.91522 0.92890 0.92218 0.93541 0.93238 0.92824 0.96465 0.89629 0.93696 0.93330 0.95662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.57 9.13 36.01 0.33 -0.25 16 2 C 0.03 0.42 7.44 -35.08 -0.26 0.16 16 3 O -0.20 -2.30 10.40 6.51 0.07 -2.23 16 4 C 0.22 2.69 7.80 -13.07 -0.10 2.59 16 5 C -0.07 -0.61 6.33 -91.73 -0.58 -1.19 16 6 C -0.16 -1.02 10.23 -26.73 -0.27 -1.29 16 7 C -0.16 -0.98 10.16 -26.69 -0.27 -1.25 16 8 N -0.45 -6.51 11.06 -7.65 -0.08 -6.59 16 9 C -0.07 -1.03 6.99 -83.02 -0.58 -1.61 16 10 C 0.60 9.44 7.78 -12.52 -0.10 9.34 16 11 O -0.54 -9.06 15.27 5.27 0.08 -8.98 16 12 N -0.70 -10.88 5.01 -54.88 -0.27 -11.15 16 13 C 0.15 2.30 2.35 -67.93 -0.16 2.14 16 14 H 0.08 1.30 7.58 -51.92 -0.39 0.91 16 15 C -0.16 -2.41 8.76 37.16 0.33 -2.09 16 16 C -0.11 -1.95 2.27 -90.50 -0.21 -2.16 16 17 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 18 C -0.10 -1.68 4.89 -26.69 -0.13 -1.81 16 19 C -0.14 -2.73 6.08 -26.61 -0.16 -2.89 16 20 C 0.17 4.06 5.30 -3.71 -0.02 4.04 16 21 N -0.59 -14.73 2.99 -172.32 -0.52 -15.24 16 22 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 23 H 0.06 1.73 7.89 -52.48 -0.41 1.32 16 24 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 25 N -0.90 -26.23 11.20 55.49 0.62 -25.61 16 26 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 30 C 0.15 3.11 5.26 -3.71 -0.02 3.09 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 0.89 8.08 -51.93 -0.42 0.47 16 33 H 0.10 0.89 8.08 -51.93 -0.42 0.47 16 34 H 0.15 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.10 0.64 7.94 -51.93 -0.41 0.22 16 39 H 0.41 6.53 7.01 -40.82 -0.29 6.25 16 40 H 0.07 0.95 6.60 -51.93 -0.34 0.61 16 41 H 0.07 1.03 6.23 -51.93 -0.32 0.70 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.06 0.98 6.63 -51.93 -0.34 0.64 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.09 2.29 6.06 -51.93 -0.31 1.98 16 49 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 50 H 0.05 1.00 6.75 -51.93 -0.35 0.65 16 51 H 0.03 0.53 6.06 -51.93 -0.31 0.22 16 LS Contribution 404.87 15.07 6.10 6.10 Total: -1.00 -31.99 404.87 -9.59 -41.58 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -8.12 Total: 5.68 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.44 Total: -0.26 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.25 Total: -58.60 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.15 Total: -11.22 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.99 -9.59 -41.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025582669.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.633 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds