Wall clock time and date at job start Wed Apr 1 2020 05:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34261 * 126.52201 * 2 1 4 4 C 1.34045 * 108.22635 * 180.02562 * 3 2 1 5 5 C 1.50707 * 125.38059 * 179.97438 * 4 3 2 6 6 C 1.53000 * 117.49405 * 300.02299 * 5 4 3 7 7 C 1.53002 * 60.03048 * 107.49901 * 6 5 4 8 8 N 1.29941 * 109.24233 * 0.26056 * 4 3 2 9 9 C 1.36066 * 108.47684 * 359.57863 * 8 4 3 10 10 C 1.47419 * 126.44976 * 180.16420 * 9 8 4 11 11 O 1.21608 * 120.00167 * 180.29669 * 10 9 8 12 12 N 1.34775 * 119.99708 * 0.29830 * 10 9 8 13 13 C 1.46505 * 120.00110 * 179.97438 * 12 10 9 14 14 H 1.09008 * 109.46440 * 34.99975 * 13 12 10 15 15 C 1.53001 * 109.47150 * 275.00540 * 13 12 10 16 16 C 1.52991 * 109.47407 * 154.99841 * 13 12 10 17 17 H 1.09002 * 109.50331 * 305.06825 * 16 13 12 18 18 C 1.53045 * 109.49854 * 185.00259 * 16 13 12 19 19 C 1.53039 * 109.53537 * 178.68774 * 18 16 13 20 20 C 1.53189 * 109.31759 * 61.36620 * 19 18 16 21 21 N 1.46925 * 108.77285 * 305.36238 * 20 19 18 22 22 C 1.36939 * 120.63237 * 233.58806 * 21 20 19 23 23 H 1.08003 * 120.00114 * 151.83275 * 22 21 20 24 24 C 1.38816 * 119.99637 * 331.83269 * 22 21 20 25 25 N 1.31617 * 120.00104 * 343.07587 * 24 22 21 26 26 Si 1.86796 * 119.99881 * 163.08210 * 24 22 21 27 27 H 1.48504 * 109.47428 * 89.99873 * 26 24 22 28 28 H 1.48494 * 109.47262 * 209.99762 * 26 24 22 29 29 H 1.48502 * 109.46999 * 329.99889 * 26 24 22 30 30 C 1.46924 * 118.73977 * 53.60874 * 21 20 19 31 31 H 1.09000 * 109.47650 * 359.97438 * 1 2 3 32 32 H 1.08994 * 109.46923 * 119.98171 * 1 2 3 33 33 H 1.09003 * 109.47028 * 239.97716 * 1 2 3 34 34 H 1.08997 * 115.54857 * 154.35672 * 5 4 3 35 35 H 1.08998 * 117.49600 * 214.99576 * 6 5 4 36 36 H 1.08992 * 117.50039 * 359.97438 * 6 5 4 37 37 H 1.09001 * 117.50269 * 107.49564 * 7 6 5 38 38 H 1.08993 * 117.50065 * 252.52010 * 7 6 5 39 39 H 0.96999 * 120.00396 * 0.02562 * 12 10 9 40 40 H 1.08997 * 109.46966 * 179.97438 * 15 13 12 41 41 H 1.08999 * 109.46627 * 299.99576 * 15 13 12 42 42 H 1.08998 * 109.47324 * 59.99225 * 15 13 12 43 43 H 1.08994 * 109.45671 * 298.70436 * 18 16 13 44 44 H 1.08992 * 109.45792 * 58.67942 * 18 16 13 45 45 H 1.09000 * 109.49269 * 181.31687 * 19 18 16 46 46 H 1.09000 * 109.49891 * 301.37765 * 19 18 16 47 47 H 1.08990 * 109.58700 * 65.14828 * 20 19 18 48 48 H 1.09001 * 109.58686 * 185.57833 * 20 19 18 49 49 H 0.96998 * 119.99957 * 179.97438 * 25 24 22 50 50 H 1.09003 * 109.59214 * 186.60536 * 30 21 20 51 51 H 1.08998 * 109.58879 * 66.18086 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0790 0.0000 4 6 3.5787 0.6582 -0.0006 5 6 4.7929 1.5509 -0.0013 6 6 4.9592 2.5162 -1.1767 7 6 4.5676 3.0512 0.2023 8 7 3.6002 -0.6411 -0.0065 9 6 2.3170 -1.0936 -0.0005 10 6 1.8854 -2.5032 -0.0006 11 8 0.7003 -2.7762 -0.0003 12 7 2.8041 -3.4892 -0.0012 13 6 2.3753 -4.8901 -0.0008 14 1 1.4635 -4.9910 -0.5897 15 6 2.1066 -5.3408 1.4364 16 6 3.4755 -5.7605 -0.6111 17 1 3.7303 -5.3836 -1.6017 18 6 2.9803 -7.2040 -0.7257 19 6 4.0683 -8.0690 -1.3662 20 6 5.3157 -8.0550 -0.4771 21 7 5.7137 -6.6602 -0.2429 22 6 6.9903 -6.2443 -0.5125 23 1 7.1774 -5.2152 -0.7817 24 6 8.0437 -7.1453 -0.4397 25 7 7.8900 -8.2875 0.1959 26 14 9.6796 -6.7365 -1.2436 27 1 10.5462 -6.0259 -0.2692 28 1 10.3460 -7.9912 -1.6756 29 1 9.4470 -5.8674 -2.4250 30 6 4.7163 -5.7203 0.2866 31 1 -0.3634 1.0276 0.0005 32 1 -0.3633 -0.5135 -0.8901 33 1 -0.3633 -0.5142 0.8898 34 1 5.6970 1.1151 0.4239 35 1 5.9727 2.7157 -1.5245 36 1 4.1907 2.5053 -1.9495 37 1 5.3235 3.6025 0.7616 38 1 3.5411 3.3921 0.3369 39 1 3.7494 -3.2714 -0.0011 40 1 1.7871 -6.3829 1.4366 41 1 3.0183 -5.2398 2.0252 42 1 1.3228 -4.7207 1.8712 43 1 2.7487 -7.5884 0.2676 44 1 2.0833 -7.2321 -1.3442 45 1 3.7062 -9.0919 -1.4689 46 1 4.3175 -7.6708 -2.3498 47 1 5.0912 -8.5357 0.4749 48 1 6.1257 -8.5874 -0.9756 49 1 8.6260 -8.9173 0.2464 50 1 5.1308 -4.7122 0.2920 51 1 4.4429 -6.0106 1.3010 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025582669.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:25 Heat of formation + Delta-G solvation = 1.452346 kcal Electronic energy + Delta-G solvation = -31106.344300 eV Core-core repulsion = 27007.560499 eV Total energy + Delta-G solvation = -4098.783802 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.59217 -41.03634 -39.48680 -38.17230 -36.72476 -36.02082 -34.67524 -33.31496 -32.51893 -32.24656 -29.59955 -28.61350 -27.23138 -26.00910 -24.90027 -23.97674 -23.75028 -23.32342 -22.57647 -21.65382 -21.08772 -20.08441 -18.98779 -18.55255 -18.12362 -17.47965 -17.06269 -16.85831 -16.45556 -16.12430 -15.75157 -15.73713 -15.52577 -15.14845 -14.96631 -14.72478 -14.65824 -14.11589 -14.02711 -13.96820 -13.70046 -13.53812 -13.32605 -13.28228 -13.04988 -12.77606 -12.71045 -12.65681 -12.46563 -12.30791 -12.06897 -11.96696 -11.89457 -11.76737 -11.70304 -11.57871 -11.51925 -11.35835 -11.12781 -11.04814 -10.52161 -10.19354 -9.72960 -8.64768 -7.86819 -5.31932 -0.05508 0.81668 1.31299 1.45415 1.46984 1.56810 2.03373 2.14545 2.50994 2.62145 2.89081 3.27581 3.49295 3.53878 3.62712 3.73281 3.90511 3.93551 3.97537 4.03828 4.07700 4.12402 4.34326 4.37510 4.42479 4.46567 4.55924 4.64579 4.67717 4.72767 4.77297 4.84409 4.85906 4.89458 4.94234 4.98284 5.01746 5.04931 5.07440 5.13433 5.17780 5.19565 5.28429 5.34165 5.43875 5.48720 5.57267 5.67614 5.79460 6.25803 6.39782 6.53505 7.03594 7.15910 7.87345 8.38803 9.19133 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009724 B = 0.003034 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.737705 B = 9225.281648 C =11715.362535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.044 3.956 3 O -0.193 6.193 4 C 0.227 3.773 5 C -0.099 4.099 6 C -0.149 4.149 7 C -0.143 4.143 8 N -0.483 5.483 9 C -0.106 4.106 10 C 0.602 3.398 11 O -0.556 6.556 12 N -0.703 5.703 13 C 0.158 3.842 14 H 0.089 0.911 15 C -0.158 4.158 16 C -0.097 4.097 17 H 0.061 0.939 18 C -0.096 4.096 19 C -0.132 4.132 20 C 0.174 3.826 21 N -0.609 5.609 22 C -0.264 4.264 23 H 0.062 0.938 24 C -0.048 4.048 25 N -0.933 5.933 26 Si 0.964 3.036 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.272 1.272 30 C 0.152 3.848 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.153 0.847 35 H 0.130 0.870 36 H 0.095 0.905 37 H 0.133 0.867 38 H 0.102 0.898 39 H 0.408 0.592 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.047 0.953 47 H -0.002 1.002 48 H 0.050 0.950 49 H 0.250 0.750 50 H 0.042 0.958 51 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.728 21.015 -0.975 25.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.012 4.012 3 O -0.081 6.081 4 C 0.019 3.981 5 C -0.118 4.118 6 C -0.187 4.187 7 C -0.181 4.181 8 N -0.212 5.212 9 C -0.225 4.225 10 C 0.388 3.612 11 O -0.435 6.435 12 N -0.353 5.353 13 C 0.054 3.946 14 H 0.107 0.893 15 C -0.216 4.216 16 C -0.118 4.118 17 H 0.079 0.921 18 C -0.134 4.134 19 C -0.171 4.171 20 C 0.049 3.951 21 N -0.332 5.332 22 C -0.394 4.394 23 H 0.080 0.920 24 C -0.244 4.244 25 N -0.579 5.579 26 Si 0.792 3.208 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.197 1.197 30 C 0.027 3.973 31 H 0.125 0.875 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.170 0.830 35 H 0.148 0.852 36 H 0.113 0.887 37 H 0.151 0.849 38 H 0.121 0.879 39 H 0.244 0.756 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.066 0.934 47 H 0.016 0.984 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.061 0.939 51 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -13.898 20.294 -0.954 24.615 hybrid contribution 1.248 0.042 -0.158 1.259 sum -12.649 20.336 -1.112 23.975 Atomic orbital electron populations 1.20578 0.80148 1.05613 1.05544 1.24246 0.96202 0.82732 0.98062 1.84298 1.17852 1.35982 1.69926 1.25666 0.83858 0.89435 0.99171 1.20557 0.91180 0.90438 1.09597 1.23252 1.05087 0.98876 0.91492 1.23248 1.04683 0.90821 0.99307 1.70701 1.21870 1.10058 1.18543 1.21567 0.89475 0.95771 1.15648 1.16825 0.85353 0.82999 0.75999 1.90745 1.16556 1.83754 1.52473 1.46027 1.10276 1.06072 1.72938 1.20988 0.97421 0.78575 0.97612 0.89255 1.22203 1.01550 1.02322 0.95545 1.21730 0.94798 0.96056 0.99223 0.92068 1.21410 0.97638 0.92977 1.01331 1.22019 0.96449 0.99685 0.98902 1.20626 0.94370 0.85157 0.94967 1.44272 1.07536 1.06830 1.74560 1.19470 0.84398 0.96055 1.39457 0.91998 1.25754 1.00767 0.97851 1.00022 1.70183 1.32427 1.11166 1.44142 0.85333 0.80007 0.76839 0.78627 1.21053 1.21762 1.19714 1.21077 0.88979 0.92819 0.94439 0.87540 0.88160 0.88114 0.82968 0.85170 0.88687 0.84873 0.87936 0.75632 0.90006 0.92688 0.92670 0.91505 0.90385 0.90932 0.93438 0.98411 0.93108 0.94121 0.93919 0.95826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.01 9.13 71.24 0.65 -0.36 16 2 C 0.04 1.05 7.44 25.19 0.19 1.24 16 3 O -0.19 -4.30 10.40 0.40 0.00 -4.30 16 4 C 0.23 5.39 7.80 88.39 0.69 6.08 16 5 C -0.10 -1.58 6.33 -11.51 -0.07 -1.65 16 6 C -0.15 -1.65 10.23 30.60 0.31 -1.34 16 7 C -0.14 -1.39 10.16 30.62 0.31 -1.07 16 8 N -0.48 -14.22 11.06 -293.03 -3.24 -17.46 16 9 C -0.11 -3.08 6.99 40.41 0.28 -2.80 16 10 C 0.60 18.80 7.78 86.66 0.67 19.47 16 11 O -0.56 -18.16 15.27 -4.06 -0.06 -18.22 16 12 N -0.70 -21.84 5.01 -445.80 -2.23 -24.08 16 13 C 0.16 4.71 2.35 44.99 0.11 4.82 16 14 H 0.09 2.62 7.58 -2.38 -0.02 2.61 16 15 C -0.16 -4.45 8.76 71.98 0.63 -3.82 16 16 C -0.10 -3.30 2.27 -10.72 -0.02 -3.32 16 17 H 0.06 2.23 8.14 -2.39 -0.02 2.22 16 18 C -0.10 -3.02 4.89 30.62 0.15 -2.87 16 19 C -0.13 -4.92 6.08 30.67 0.19 -4.73 16 20 C 0.17 8.50 5.30 86.36 0.46 8.96 16 21 N -0.61 -31.01 2.99 -699.10 -2.09 -33.10 16 22 C -0.26 -14.80 9.58 84.03 0.81 -13.99 16 23 H 0.06 3.42 7.89 -2.91 -0.02 3.40 16 24 C -0.05 -2.75 4.92 84.86 0.42 -2.33 16 25 N -0.93 -55.81 11.20 21.65 0.24 -55.57 16 26 Si 0.96 45.48 29.59 68.60 2.03 47.51 16 27 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 28 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 29 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 30 C 0.15 6.35 5.26 86.36 0.45 6.81 16 31 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.10 1.64 8.08 -2.39 -0.02 1.62 16 33 H 0.10 1.65 8.08 -2.39 -0.02 1.63 16 34 H 0.15 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.10 1.03 7.94 -2.39 -0.02 1.01 16 39 H 0.41 13.27 7.01 -92.71 -0.65 12.62 16 40 H 0.08 2.08 6.60 -2.39 -0.02 2.07 16 41 H 0.05 1.67 6.23 -2.39 -0.01 1.65 16 42 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.07 2.05 6.63 -2.39 -0.02 2.03 16 44 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.07 2.37 8.14 -2.39 -0.02 2.36 16 46 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 48 H 0.05 2.81 6.06 -2.39 -0.01 2.80 16 49 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 50 H 0.04 1.79 6.75 -2.39 -0.02 1.78 16 51 H 0.02 1.01 6.06 -2.39 -0.01 0.99 16 Total: -1.00 -70.64 404.87 1.16 -69.48 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.30 Total: 26.65 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 6.22 Total: 9.08 kcal Atomic # 7 Polarization: -122.88 SS G_CDS: -7.32 Total: -130.20 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.06 Total: -22.52 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -70.64 1.16 -69.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025582669.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.931 kcal (2) G-P(sol) polarization free energy of solvation -70.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds