Wall clock time and date at job start Wed Apr 1 2020 05:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.34258 * 126.52226 * 2 1 4 4 C 1.34045 * 108.22335 * 180.02562 * 3 2 1 5 5 C 1.50703 * 125.37641 * 180.02562 * 4 3 2 6 6 C 1.52995 * 117.49955 * 8.72081 * 5 4 3 7 7 C 1.53000 * 117.49679 * 300.06470 * 5 4 3 8 8 N 1.29939 * 109.24628 * 359.75007 * 4 3 2 9 9 C 1.36068 * 108.47559 * 0.40455 * 8 4 3 10 10 C 1.47416 * 126.44712 * 179.86289 * 9 8 4 11 11 O 1.21609 * 119.99532 * 179.69324 * 10 9 8 12 12 N 1.34773 * 120.00260 * 359.68189 * 10 9 8 13 13 C 1.46501 * 120.00256 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.46951 * 325.01200 * 13 12 10 15 15 C 1.53004 * 109.46718 * 85.00459 * 13 12 10 16 16 C 1.52993 * 109.47213 * 205.00527 * 13 12 10 17 17 H 1.08999 * 109.50168 * 299.93443 * 16 13 12 18 18 C 1.53051 * 109.52109 * 179.85583 * 16 13 12 19 19 C 1.53040 * 109.53536 * 178.66961 * 18 16 13 20 20 C 1.52759 * 109.38545 * 61.23641 * 19 18 16 21 21 N 1.46923 * 109.01237 * 305.59084 * 20 19 18 22 22 C 1.36935 * 120.62889 * 233.58434 * 21 20 19 23 23 H 1.07998 * 119.99964 * 152.10883 * 22 21 20 24 24 C 1.38806 * 119.99901 * 332.09815 * 22 21 20 25 25 N 1.31623 * 120.00510 * 335.27507 * 24 22 21 26 26 Si 1.86803 * 120.00033 * 154.99824 * 24 22 21 27 27 H 1.48499 * 109.47244 * 89.99976 * 26 24 22 28 28 H 1.48497 * 109.47129 * 210.00254 * 26 24 22 29 29 H 1.48505 * 109.46806 * 330.00107 * 26 24 22 30 30 C 1.46923 * 118.73676 * 53.30433 * 21 20 19 31 31 H 1.09004 * 109.46743 * 269.95229 * 1 2 3 32 32 H 1.08997 * 109.47328 * 29.95150 * 1 2 3 33 33 H 1.08999 * 109.47076 * 149.95305 * 1 2 3 34 34 H 1.09003 * 115.54929 * 154.39817 * 5 4 3 35 35 H 1.09001 * 117.49993 * 0.02562 * 6 5 4 36 36 H 1.09004 * 117.50142 * 145.01822 * 6 5 4 37 37 H 1.09011 * 117.49466 * 214.98210 * 7 5 4 38 38 H 1.08994 * 117.50273 * 359.96893 * 7 5 4 39 39 H 0.96998 * 119.99849 * 0.02562 * 12 10 9 40 40 H 1.08999 * 109.46657 * 60.00116 * 15 13 12 41 41 H 1.08992 * 109.46989 * 179.97438 * 15 13 12 42 42 H 1.09001 * 109.46941 * 300.00436 * 15 13 12 43 43 H 1.08990 * 109.45897 * 298.68739 * 18 16 13 44 44 H 1.09000 * 109.45851 * 58.64847 * 18 16 13 45 45 H 1.08998 * 109.49326 * 181.31985 * 19 18 16 46 46 H 1.09008 * 109.49676 * 301.38061 * 19 18 16 47 47 H 1.09000 * 109.50763 * 185.70096 * 20 19 18 48 48 H 1.09006 * 109.42391 * 65.42647 * 20 19 18 49 49 H 0.97000 * 119.99468 * 353.97254 * 25 24 22 50 50 H 1.09006 * 109.58528 * 66.43357 * 30 21 20 51 51 H 1.09001 * 109.58720 * 186.85647 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5787 0.6581 -0.0006 5 6 4.7929 1.5508 -0.0002 6 6 4.5675 3.0498 0.2066 7 6 4.9590 2.5178 -1.1742 8 7 3.6002 -0.6411 0.0044 9 6 2.3170 -1.0936 -0.0007 10 6 1.8854 -2.5032 -0.0006 11 8 0.7004 -2.7762 0.0001 12 7 2.8041 -3.4893 -0.0014 13 6 2.3752 -4.8901 -0.0007 14 1 1.4645 -4.9909 0.5896 15 6 2.1042 -5.3412 -1.4374 16 6 3.4765 -5.7604 0.6080 17 1 4.3872 -5.6608 0.0173 18 6 3.0281 -7.2237 0.6126 19 6 4.1427 -8.0986 1.1909 20 6 4.4248 -7.6744 2.6310 21 7 4.7126 -6.2339 2.6580 22 6 5.8606 -5.7626 3.2368 23 1 6.2987 -4.8375 2.8922 24 6 6.4610 -6.4736 4.2667 25 7 5.7423 -7.2866 5.0116 26 14 8.2908 -6.2824 4.5908 27 1 8.5093 -5.1781 5.5593 28 1 8.8288 -7.5473 5.1525 29 1 8.9888 -5.9697 3.3178 30 6 3.7483 -5.3093 2.0465 31 1 -0.3633 -0.0009 1.0277 32 1 -0.3634 0.8904 -0.5131 33 1 -0.3633 -0.8896 -0.5146 34 1 5.6971 1.1144 0.4242 35 1 3.5411 3.3904 0.3429 36 1 5.3235 3.5999 0.7670 37 1 5.9726 2.7180 -1.5218 38 1 4.1905 2.5080 -1.9470 39 1 3.7493 -3.2715 -0.0017 40 1 3.0150 -5.2403 -2.0277 41 1 1.7856 -6.3835 -1.4369 42 1 1.3197 -4.7211 -1.8710 43 1 2.1316 -7.3268 1.2237 44 1 2.8104 -7.5400 -0.4075 45 1 3.8318 -9.1432 1.1722 46 1 5.0469 -7.9774 0.5943 47 1 5.2845 -8.2261 3.0112 48 1 3.5512 -7.8842 3.2484 49 1 4.7796 -7.3238 4.8989 50 1 2.8185 -5.3222 2.6154 51 1 4.1618 -4.3008 2.0413 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025582672.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:35 Heat of formation + Delta-G solvation = 17.428402 kcal Electronic energy + Delta-G solvation = -31178.455286 eV Core-core repulsion = 27080.364258 eV Total energy + Delta-G solvation = -4098.091028 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.65060 -39.78425 -38.04866 -37.58897 -35.42211 -35.02833 -33.14399 -32.43762 -30.99792 -30.45427 -28.48272 -27.76692 -25.24874 -24.65780 -23.50888 -22.95002 -22.68402 -22.08379 -21.38300 -20.32220 -20.11441 -19.10841 -17.82990 -17.31044 -17.17411 -16.70562 -15.98203 -15.63625 -15.00169 -14.73553 -14.58108 -14.18788 -14.03872 -13.74222 -13.65563 -13.56163 -13.34857 -13.32957 -12.87357 -12.83255 -12.61853 -12.54005 -12.28399 -12.04419 -11.88571 -11.75530 -11.57184 -11.11053 -11.04548 -11.02626 -10.90715 -10.88002 -10.64007 -10.30156 -10.20592 -10.10904 -10.02765 -9.85383 -9.70745 -9.24603 -9.02224 -8.76346 -8.32399 -6.83629 -6.02828 -3.18807 0.91209 1.79283 2.18704 3.11638 3.23196 3.38629 3.51485 3.55668 3.57958 3.70979 4.24938 4.40083 4.47011 4.52333 4.60676 4.76657 4.92914 4.96285 5.15799 5.21116 5.22795 5.24008 5.35633 5.36042 5.37255 5.50492 5.54151 5.55092 5.60697 5.66945 5.70488 5.75006 5.79026 5.87829 5.99086 6.01793 6.08247 6.23831 6.24882 6.36960 6.50946 6.52958 6.60087 6.74375 6.78472 6.88103 7.14902 7.25187 7.28070 7.66090 8.04300 8.22744 8.61966 9.16358 9.89213 10.34154 11.25500 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009412 B = 0.003085 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2974.352124 B = 9073.222436 C =11236.999086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.036 3.964 3 O -0.197 6.197 4 C 0.223 3.777 5 C -0.071 4.071 6 C -0.163 4.163 7 C -0.158 4.158 8 N -0.448 5.448 9 C -0.071 4.071 10 C 0.604 3.396 11 O -0.541 6.541 12 N -0.699 5.699 13 C 0.148 3.852 14 H 0.087 0.913 15 C -0.161 4.161 16 C -0.111 4.111 17 H 0.073 0.927 18 C -0.101 4.101 19 C -0.136 4.136 20 C 0.149 3.851 21 N -0.598 5.598 22 C -0.347 4.347 23 H 0.055 0.945 24 C -0.025 4.025 25 N -0.917 5.917 26 Si 1.065 2.935 27 H -0.295 1.295 28 H -0.286 1.286 29 H -0.292 1.292 30 C 0.158 3.842 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.150 0.850 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.410 0.590 40 H 0.055 0.945 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.057 0.943 47 H 0.078 0.922 48 H 0.015 0.985 49 H 0.269 0.731 50 H 0.014 0.986 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.024 16.710 -14.523 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.020 4.020 3 O -0.085 6.085 4 C 0.015 3.985 5 C -0.090 4.090 6 C -0.200 4.200 7 C -0.196 4.196 8 N -0.177 5.177 9 C -0.191 4.191 10 C 0.390 3.610 11 O -0.419 6.419 12 N -0.349 5.349 13 C 0.043 3.957 14 H 0.105 0.895 15 C -0.219 4.219 16 C -0.132 4.132 17 H 0.091 0.909 18 C -0.139 4.139 19 C -0.176 4.176 20 C 0.023 3.977 21 N -0.321 5.321 22 C -0.477 4.477 23 H 0.073 0.927 24 C -0.226 4.226 25 N -0.558 5.558 26 Si 0.895 3.105 27 H -0.222 1.222 28 H -0.212 1.212 29 H -0.219 1.219 30 C 0.031 3.969 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.131 0.869 34 H 0.167 0.833 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.118 0.882 39 H 0.246 0.754 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.097 0.903 48 H 0.033 0.967 49 H 0.080 0.920 50 H 0.032 0.968 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.019 15.566 -13.560 21.503 hybrid contribution -1.304 1.118 -0.869 1.925 sum -7.324 16.683 -14.429 23.241 Atomic orbital electron populations 1.20587 0.82465 1.05233 1.04754 1.23712 0.95029 0.83243 1.00016 1.84263 1.17872 1.36343 1.70012 1.24940 0.83040 0.89545 1.00987 1.20291 0.92351 0.89468 1.06882 1.23129 1.04047 0.93220 0.99611 1.23150 1.04062 1.00674 0.91676 1.70720 1.21514 1.08669 1.16796 1.21556 0.88721 0.95750 1.13089 1.16651 0.85551 0.82484 0.76360 1.90753 1.16237 1.83263 1.51690 1.45901 1.10273 1.05848 1.72860 1.21102 0.98880 0.79056 0.96650 0.89453 1.22202 1.01671 1.01716 0.96323 1.21956 0.96844 0.94801 0.99553 0.90876 1.21442 0.98601 0.94010 0.99828 1.21987 0.97943 0.97524 1.00101 1.20875 0.99228 0.85683 0.91951 1.44091 1.21266 1.00175 1.66608 1.19973 1.01505 1.10978 1.15202 0.92730 1.25816 1.06261 0.98523 0.92045 1.70744 1.08093 1.40790 1.36133 0.83551 0.75545 0.76077 0.75364 1.22226 1.21197 1.21908 1.20854 0.92519 0.93764 0.89764 0.88969 0.90315 0.86879 0.83250 0.87870 0.87062 0.86993 0.88224 0.75432 0.92589 0.91173 0.92566 0.92561 0.92791 0.92971 0.92418 0.90336 0.96735 0.92004 0.96799 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 9.88 36.01 0.36 -0.35 16 2 C 0.04 0.46 7.44 -35.08 -0.26 0.20 16 3 O -0.20 -2.37 10.40 6.52 0.07 -2.31 16 4 C 0.22 2.74 7.80 -13.08 -0.10 2.64 16 5 C -0.07 -0.61 6.33 -91.77 -0.58 -1.19 16 6 C -0.16 -1.01 10.16 -26.70 -0.27 -1.28 16 7 C -0.16 -0.98 10.24 -26.70 -0.27 -1.26 16 8 N -0.45 -6.58 11.06 -7.65 -0.08 -6.66 16 9 C -0.07 -1.06 6.99 -83.02 -0.58 -1.64 16 10 C 0.60 9.62 7.78 -12.53 -0.10 9.52 16 11 O -0.54 -9.22 14.47 5.27 0.08 -9.15 16 12 N -0.70 -10.78 4.47 -54.89 -0.25 -11.03 16 13 C 0.15 2.25 2.16 -67.93 -0.15 2.10 16 14 H 0.09 1.45 7.58 -51.93 -0.39 1.05 16 15 C -0.16 -2.10 9.14 37.16 0.34 -1.76 16 16 C -0.11 -1.91 1.97 -90.50 -0.18 -2.09 16 17 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 18 C -0.10 -1.66 4.86 -26.68 -0.13 -1.79 16 19 C -0.14 -2.57 6.06 -26.83 -0.16 -2.73 16 20 C 0.15 3.52 4.66 -3.93 -0.02 3.50 16 21 N -0.60 -15.18 2.86 -172.59 -0.49 -15.67 16 22 C -0.35 -9.84 9.49 -15.06 -0.14 -9.98 16 23 H 0.05 1.56 7.94 -52.49 -0.42 1.14 16 24 C -0.02 -0.71 4.69 -17.43 -0.08 -0.79 16 25 N -0.92 -27.83 12.40 55.49 0.69 -27.14 16 26 Si 1.06 25.55 29.99 -169.99 -5.10 20.45 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 30 C 0.16 3.40 5.56 -3.71 -0.02 3.38 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.11 1.18 6.48 -51.93 -0.34 0.85 16 34 H 0.15 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.10 0.67 7.94 -51.93 -0.41 0.26 16 36 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.11 0.51 8.14 -51.92 -0.42 0.08 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.41 6.33 8.14 -40.82 -0.33 5.99 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.84 6.40 -51.93 -0.33 0.50 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.76 6.37 -51.93 -0.33 0.43 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 47 H 0.08 2.08 6.30 -51.93 -0.33 1.76 16 48 H 0.01 0.36 7.87 -51.93 -0.41 -0.05 16 49 H 0.27 8.25 6.71 -40.82 -0.27 7.98 16 50 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 51 H 0.05 1.19 7.43 -51.93 -0.39 0.80 16 LS Contribution 407.18 15.07 6.14 6.14 Total: -1.00 -33.23 407.18 -9.55 -42.78 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -8.24 Total: 6.10 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -2.35 Total: -3.50 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: -0.13 Total: -60.51 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.14 Total: -11.45 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.10 Total: 20.45 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.23 -9.55 -42.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025582672.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.206 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds